Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:115244911-122184950

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298 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
Hipq1 13 110272953 to 119339836 9066883 QTL hyperinsulin production QTL 1
Gm47891 13 115282201 to 115282675 474 + pseudogene predicted gene, 47891
D13Mit214 13 115354396 to 115354587 191 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 214
Gm6035 13 115528556 to 115529772 1216 - pseudogene predicted gene 6035
Tssr124162 13 115529793 to 115529800 7 - TSS region transcription start site region 124162
D13Mit151 13 115551769 to 115551891 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 151
Gm47892 13 115719304 to 115719499 195 - pseudogene predicted gene, 47892
Gm18135 13 115770936 to 115771453 517 + pseudogene predicted gene, 18135
Gm47893 13 116096035 to 116096300 265 + pseudogene predicted gene, 47893
Rpl34-ps2 13 116153781 to 116154134 353 + pseudogene ribosomal protein L34, pseudogene 2
Cpgi6129 13 116293895 to 116294226 331 CpG island CpG island 6129
Cpgi6130 13 116297136 to 116297635 499 CpG island CpG island 6130
Isl1 13 116298281 to 116309689 11408 - protein coding gene ISL1 transcription factor, LIM/homeodomain
Cpgi6131 13 116303024 to 116303484 460 CpG island CpG island 6131
Cpgi6132 13 116305094 to 116305515 421 CpG island CpG island 6132
Cpgi6133 13 116309331 to 116310451 1120 CpG island CpG island 6133
Tssr124163 13 116309639 to 116309699 60 - TSS region transcription start site region 124163
Tssr121211 13 116309823 to 116309841 18 + TSS region transcription start site region 121211
Gm29764 13 116330763 to 116331538 775 - pseudogene predicted gene, 29764
Gm47912 13 116361198 to 116361694 496 - pseudogene predicted gene, 47912
Mdq5 13 116444425 to 116444425 0 QTL mammary ductal QTL 5
Gm47914 13 116558311 to 116677705 119394 - lincRNA gene predicted gene, 47914
Gm47913 13 116651448 to 116663591 12143 - lincRNA gene predicted gene, 47913
Gm23198 13 116675878 to 116675968 90 + rRNA gene predicted gene, 23198
Cpgi6134 13 116705573 to 116706256 683 CpG island CpG island 6134
4930435F18Rik 13 116802095 to 116838178 36083 - lincRNA gene RIKEN cDNA 4930435F18 gene
A930041H05Rik 13 116850843 to 116852227 1384 unclassified gene RIKEN cDNA A930041H05 gene
Parp8 13 116854820 to 117025537 170717 - protein coding gene poly (ADP-ribose) polymerase family, member 8
Tssr124164 13 116876370 to 116876384 14 - TSS region transcription start site region 124164
Tssr124165 13 116888990 to 116889003 13 - TSS region transcription start site region 124165
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
D13Mit77 13 116906406 to 116906680 274 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 77
Tssr124166 13 116923922 to 116923939 17 - TSS region transcription start site region 124166
Tssr124167 13 116968704 to 116968706 2 - TSS region transcription start site region 124167
Tssr124168 13 117014761 to 117014776 15 - TSS region transcription start site region 124168
Tssr124169 13 117014802 to 117014809 7 - TSS region transcription start site region 124169
5930433N17Rik 13 117017002 to 117019407 2405 unclassified gene RIKEN cDNA 5930433N17 gene
Tssr124170 13 117024140 to 117024172 32 - TSS region transcription start site region 124170
Cpgi6135 13 117024276 to 117026041 1765 CpG island CpG island 6135
Tssr124171 13 117024569 to 117024570 1 - TSS region transcription start site region 124171
Tssr124172 13 117025347 to 117025364 17 - TSS region transcription start site region 124172
Tssr124173 13 117025385 to 117025444 59 - TSS region transcription start site region 124173
Tssr124174 13 117025505 to 117025541 36 - TSS region transcription start site region 124174
Tssr124175 13 117025546 to 117025557 11 - TSS region transcription start site region 124175
Tssr124176 13 117025834 to 117025854 20 - TSS region transcription start site region 124176
Tssr124177 13 117025932 to 117025963 31 - TSS region transcription start site region 124177
Tssr124178 13 117033732 to 117033789 57 - TSS region transcription start site region 124178
Tssr121212 13 117048725 to 117048768 43 + TSS region transcription start site region 121212
Tssr121213 13 117050580 to 117050606 26 + TSS region transcription start site region 121213
Gm29767 13 117050734 to 117051136 402 + pseudogene predicted gene, 29767
Gm48026 13 117085631 to 117085979 348 - pseudogene predicted gene, 48026
Gm6416 13 117130027 to 117135884 5857 + lincRNA gene predicted gene 6416
Gm18945 13 117143106 to 117144195 1089 + pseudogene predicted gene, 18945
Tssr121214 13 117211930 to 117211934 4 + TSS region transcription start site region 121214
Tssr121215 13 117218388 to 117218395 7 + TSS region transcription start site region 121215
Gm17509 13 117218701 to 117221075 2374 - protein coding gene predicted gene, 17509
Tssr121216 13 117220306 to 117220334 28 + TSS region transcription start site region 121216
Cpgi6136 13 117220453 to 117221342 889 CpG island CpG island 6136
Emb 13 117220573 to 117274415 53842 + protein coding gene embigin
Tssr121217 13 117220584 to 117220637 53 + TSS region transcription start site region 121217
Tssr121218 13 117220709 to 117220721 12 + TSS region transcription start site region 121218
Tssr121219 13 117220737 to 117220754 17 + TSS region transcription start site region 121219
Tssr121220 13 117229352 to 117229362 10 + TSS region transcription start site region 121220
Gm35144 13 117229355 to 117230117 762 + pseudogene predicted gene, 35144
Tssr121221 13 117234621 to 117234625 4 + TSS region transcription start site region 121221
Tssr121222 13 117236023 to 117236024 1 + TSS region transcription start site region 121222
Tssr124179 13 117242697 to 117242709 12 - TSS region transcription start site region 124179
Tssr121223 13 117245448 to 117245451 3 + TSS region transcription start site region 121223
Tssr121224 13 117249434 to 117249446 12 + TSS region transcription start site region 121224
Tssr121225 13 117249698 to 117249719 21 + TSS region transcription start site region 121225
Tssr121226 13 117250586 to 117250606 20 + TSS region transcription start site region 121226
D13Mit204 13 117259907 to 117260178 271 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 204
Tssr121227 13 117264435 to 117264451 16 + TSS region transcription start site region 121227
A430106F12Rik 13 117265023 to 117265614 591 unclassified gene RIKEN cDNA A430106F12 gene
Tssr124180 13 117267479 to 117267496 17 - TSS region transcription start site region 124180
Tssr121228 13 117272038 to 117272076 38 + TSS region transcription start site region 121228
Tssr124181 13 117272077 to 117272098 21 - TSS region transcription start site region 124181
Tssr124182 13 117273073 to 117273104 31 - TSS region transcription start site region 124182
Tssr121229 13 117273297 to 117273333 36 + TSS region transcription start site region 121229
Gm6421 13 117358212 to 117358620 408 - pseudogene predicted pseudogene 6421
Gm5200 13 117457836 to 117459075 1239 - pseudogene predicted gene 5200
Gm46438 13 117600271 to 117602333 2062 - lncRNA gene predicted gene, 46438
Tssr121230 13 117601827 to 117601832 5 + TSS region transcription start site region 121230
Cpgi6137 13 117602096 to 117603330 1234 CpG island CpG island 6137
Tssr121231 13 117602309 to 117602325 16 + TSS region transcription start site region 121231
Hcn1 13 117602320 to 117981028 378708 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 1
Tssr121232 13 117602331 to 117602338 7 + TSS region transcription start site region 121232
Tssr121233 13 117602439 to 117602482 43 + TSS region transcription start site region 121233
Tssr121234 13 117602502 to 117602513 11 + TSS region transcription start site region 121234
Fexq2 13 117604983 to 117604983 0 QTL fear expression QTL 2
Tssr121235 13 117666484 to 117666514 30 + TSS region transcription start site region 121235
4933413L06Rik 13 117706764 to 117720011 13247 - antisense lncRNA gene RIKEN cDNA 4933413L06 gene
Tssr121236 13 117709014 to 117709017 3 + TSS region transcription start site region 121236
Tssr121237 13 117724899 to 117724900 1 + TSS region transcription start site region 121237
Gm18989 13 117741095 to 117741819 724 - pseudogene predicted gene, 18989
C030014A21Rik 13 117822312 to 117823323 1011 unclassified gene RIKEN cDNA C030014A21 gene
Tssr4182 13 117909211 to 117909216 5 + TSS region transcription start site region 4182
Gm3474 13 117943664 to 117959078 15414 - lncRNA gene predicted gene 3474
Tssr121238 13 117947121 to 117947123 2 + TSS region transcription start site region 121238
Tssr121239 13 117971583 to 117971597 14 + TSS region transcription start site region 121239
6330563C09Rik 13 117985192 to 117987409 2217 unclassified non-coding RNA gene RIKEN cDNA 6330563C09 gene
Gm26349 13 118036614 to 118036743 129 + snoRNA gene predicted gene, 26349
Tssr121240 13 118047293 to 118047302 9 + TSS region transcription start site region 121240
Gm9633 13 118047320 to 118047944 624 + pseudogene predicted gene 9633
D13Ertd104e 13 118280691 to 118280898 207 DNA segment DNA segment, Chr 13, ERATO Doi 104, expressed
D13Ertd94e 13 118280691 to 118280925 234 DNA segment DNA segment, Chr 13, ERATO Doi 94, expressed
Mrps30 13 118380110 to 118387252 7142 - protein coding gene mitochondrial ribosomal protein S30
Cpgi6138 13 118386399 to 118387498 1099 CpG island CpG island 6138
B430218F22Rik 13 118386630 to 118388124 1494 + unclassified gene RIKEN cDNA B430218F22 gene
Tssr124183 13 118387181 to 118387196 15 - TSS region transcription start site region 124183
Tssr124184 13 118387224 to 118387275 51 - TSS region transcription start site region 124184
Gm47563 13 118510358 to 118510913 555 - pseudogene predicted gene, 47563
Tssr121241 13 118556145 to 118556161 16 + TSS region transcription start site region 121241
Tssr121242 13 118556162 to 118556173 11 + TSS region transcription start site region 121242
1700003P14Rik 13 118556168 to 118588629 32461 + lincRNA gene RIKEN cDNA 1700003P14 gene
Gm9098 13 118568775 to 118569782 1007 - pseudogene predicted gene 9098
Gm47330 13 118589732 to 118590257 525 + pseudogene predicted gene, 47330
Gm18361 13 118598039 to 118598918 879 - pseudogene predicted gene, 18361
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186
Gm16263 13 118695292 to 118715396 20104 - antisense lncRNA gene predicted gene 16263
Gm3247 13 118712696 to 118715039 2343 unclassified gene predicted gene 3247
Cpgi6139 13 118714229 to 118714946 717 CpG island CpG island 6139
Tssr121243 13 118714378 to 118714388 10 + TSS region transcription start site region 121243
Tssr4183 13 118714605 to 118714616 11 + TSS region transcription start site region 4183
Tssr121244 13 118714621 to 118714676 55 + TSS region transcription start site region 121244
Tssr121245 13 118714678 to 118714701 23 + TSS region transcription start site region 121245
Fgf10 13 118714699 to 118792573 77874 + protein coding gene fibroblast growth factor 10
Tssr121246 13 118714911 to 118714950 39 + TSS region transcription start site region 121246
Tssr121247 13 118715012 to 118715027 15 + TSS region transcription start site region 121247
Cpgi6140 13 118715064 to 118715484 420 CpG island CpG island 6140
Tssr124187 13 118715657 to 118715669 12 - TSS region transcription start site region 124187
Tssr124188 13 118715686 to 118715735 49 - TSS region transcription start site region 124188
Tssr121248 13 118732824 to 118732827 3 + TSS region transcription start site region 121248
Tssr121249 13 118790480 to 118790485 5 + TSS region transcription start site region 121249
D13Mit78 13 118829225 to 118829453 228 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 78
Gm47335 13 118858145 to 118858414 269 - pseudogene predicted gene, 47335
D13Mit131 13 119074697 to 119074822 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 131
D13Dcr17 13 119246624 to 119246730 106 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 17
Gm44488 13 119269486 to 119269604 118 - miRNA gene predicted gene, 44488
Gm47336 13 119271619 to 119279545 7926 - lincRNA gene predicted gene, 47336
Nnt 13 119335527 to 119409257 73730 - protein coding gene nicotinamide nucleotide transhydrogenase
D13Mit35 13 119339644 to 119339836 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 35
Tssr124189 13 119339914 to 119339938 24 - TSS region transcription start site region 124189
Tssr124190 13 119353202 to 119353221 19 - TSS region transcription start site region 124190
Tssr124191 13 119376264 to 119376268 4 - TSS region transcription start site region 124191
Tssr124192 13 119389283 to 119389285 2 - TSS region transcription start site region 124192
Tssr124193 13 119399743 to 119399747 4 - TSS region transcription start site region 124193
Gm9777 13 119406126 to 119409426 3300 unclassified gene predicted gene 9777
Tssr124194 13 119408129 to 119408148 19 - TSS region transcription start site region 124194
Tssr124195 13 119408160 to 119408180 20 - TSS region transcription start site region 124195
Tssr121250 13 119408202 to 119408210 8 + TSS region transcription start site region 121250
Cpgi6141 13 119408682 to 119409304 622 CpG island CpG island 6141
Tssr124196 13 119408943 to 119408974 31 - TSS region transcription start site region 124196
Tssr124197 13 119408985 to 119409003 18 - TSS region transcription start site region 124197
Tssr124198 13 119409006 to 119409018 12 - TSS region transcription start site region 124198
Tssr124199 13 119409184 to 119409246 62 - TSS region transcription start site region 124199
Tssr124200 13 119409444 to 119409465 21 - TSS region transcription start site region 124200
Cpgi6142 13 119428282 to 119429876 1594 CpG island CpG island 6142
Tssr121251 13 119428382 to 119428385 3 + TSS region transcription start site region 121251
Tssr121252 13 119428396 to 119428413 17 + TSS region transcription start site region 121252
Tssr121253 13 119428416 to 119428446 30 + TSS region transcription start site region 121253
Tssr121254 13 119428449 to 119428485 36 + TSS region transcription start site region 121254
Tssr121255 13 119428490 to 119428504 14 + TSS region transcription start site region 121255
Tssr121256 13 119428561 to 119428575 14 + TSS region transcription start site region 121256
Tssr121257 13 119428583 to 119428612 29 + TSS region transcription start site region 121257
Paip1 13 119428601 to 119458218 29617 + protein coding gene polyadenylate binding protein-interacting protein 1
Tssr121258 13 119428888 to 119428960 72 + TSS region transcription start site region 121258
Tssr121259 13 119429265 to 119429272 7 + TSS region transcription start site region 121259
Tssr121260 13 119429669 to 119429680 11 + TSS region transcription start site region 121260
Tssr121261 13 119429715 to 119429730 15 + TSS region transcription start site region 121261
Tssr121262 13 119457134 to 119457138 4 + TSS region transcription start site region 121262
Cpgi6143 13 119462585 to 119463181 596 CpG island CpG island 6143
Tssr121263 13 119462752 to 119462810 58 + TSS region transcription start site region 121263
4833420G17Rik 13 119462768 to 119486120 23352 + protein coding gene RIKEN cDNA 4833420G17 gene
Tssr121264 13 119462835 to 119462856 21 + TSS region transcription start site region 121264
Tgq24 13 119466094 to 119466094 0 QTL triglyceride QTL 24
Tssr121265 13 119466393 to 119466397 4 + TSS region transcription start site region 121265
Gm9752 13 119473804 to 119476761 2957 - unclassified non-coding RNA gene predicted gene 9752
3110070M22Rik 13 119487261 to 119488383 1122 - unclassified gene RIKEN cDNA 3110070M22 gene
Cpgi6144 13 119487759 to 119489202 1443 CpG island CpG island 6144
Tmem267 13 119488039 to 119610459 122420 + protein coding gene transmembrane protein 267
Tssr121266 13 119488080 to 119488093 13 + TSS region transcription start site region 121266
Tssr121267 13 119488116 to 119488124 8 + TSS region transcription start site region 121267
Tssr124201 13 119488334 to 119488389 55 - TSS region transcription start site region 124201
Tssr124202 13 119488402 to 119488411 9 - TSS region transcription start site region 124202
Tssr121268 13 119488425 to 119488478 53 + TSS region transcription start site region 121268
Tssr121269 13 119488487 to 119488529 42 + TSS region transcription start site region 121269
Tssr121270 13 119488661 to 119488736 75 + TSS region transcription start site region 121270
Tssr121271 13 119488809 to 119488837 28 + TSS region transcription start site region 121271
Cpgi6145 13 119494984 to 119495472 488 CpG island CpG island 6145
Tssr4184 13 119597787 to 119597805 18 - TSS region transcription start site region 4184
Tssr4185 13 119598005 to 119598039 34 - TSS region transcription start site region 4185
Tssr4186 13 119601513 to 119601531 18 - TSS region transcription start site region 4186
Gm48265 13 119609765 to 119613472 3707 - lincRNA gene predicted gene, 48265
Tssr4187 13 119613858 to 119613878 20 - TSS region transcription start site region 4187
Tssr4188 13 119623796 to 119623811 15 + TSS region transcription start site region 4188