Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:113983608-116344820

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arl15 13 113794508 to 114157462 362954 + protein coding gene ADP-ribosylation factor-like 15
Tssr121197 13 113989750 to 113989753 3 + TSS region transcription start site region 121197
Tssr121198 13 114048487 to 114048492 5 + TSS region transcription start site region 121198
B430203I24Rik 13 114096296 to 114099562 3266 unclassified gene RIKEN cDNA B430203I24 gene
Tssr121199 13 114111174 to 114111176 2 + TSS region transcription start site region 121199
Tssr121200 13 114113564 to 114113568 4 + TSS region transcription start site region 121200
Gm47479 13 114118441 to 114120416 1975 - unclassified gene predicted gene, 47479
A430090L17Rik 13 114124348 to 114151592 27244 - antisense lncRNA gene RIKEN cDNA A430090L17 gene
Tssr124129 13 114149748 to 114149762 14 - TSS region transcription start site region 124129
A230102O21Rik 13 114153222 to 114154258 1036 unclassified gene RIKEN cDNA A230102O21 gene
Tssr124130 13 114156984 to 114157010 26 - TSS region transcription start site region 124130
Gm41072 13 114208989 to 114218138 9149 + lncRNA gene predicted gene, 41072
Gm37907 13 114227111 to 114237432 10321 + unclassified gene predicted gene, 37907
4631422I05Rik 13 114240878 to 114242640 1762 - unclassified gene RIKEN cDNA 4631422I05 gene
Gm47558 13 114281668 to 114284381 2713 - unclassified gene predicted gene, 47558
Ndufs4 13 114287795 to 114388094 100299 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S4
B330018G23Rik 13 114299765 to 114303862 4097 unclassified gene RIKEN cDNA B330018G23 gene
Tssr121201 13 114335072 to 114335076 4 + TSS region transcription start site region 121201
Tssr124131 13 114337122 to 114337126 4 - TSS region transcription start site region 124131
D13Mit31 13 114337990 to 114338089 99 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 31
Cpgi6116 13 114387625 to 114388187 562 CpG island CpG island 6116
Tssr124132 13 114388057 to 114388089 32 - TSS region transcription start site region 124132
Tssr124133 13 114399021 to 114399036 15 - TSS region transcription start site region 124133
Cpgi6117 13 114408815 to 114409141 326 CpG island CpG island 6117
Gm47569 13 114435409 to 114436699 1290 - pseudogene predicted gene, 47569
Gm41073 13 114437793 to 114438214 421 - pseudogene predicted gene, 41073
Cpgi6118 13 114443883 to 114444167 284 CpG island CpG island 6118
Tssr121202 13 114447452 to 114447461 9 + TSS region transcription start site region 121202
Fst 13 114452290 to 114458951 6661 - protein coding gene follistatin
Tssr124134 13 114456579 to 114456589 10 - TSS region transcription start site region 124134
Gm41074 13 114456760 to 114474219 17459 + lncRNA gene predicted gene, 41074
Cpgi6119 13 114456972 to 114457587 615 CpG island CpG island 6119
Cpgi6120 13 114458136 to 114459768 1632 CpG island CpG island 6120
Gm47040 13 114458663 to 114462047 3384 + antisense lncRNA gene predicted gene, 47040
Tssr124135 13 114458720 to 114458736 16 - TSS region transcription start site region 124135
Tssr124136 13 114458833 to 114458844 11 - TSS region transcription start site region 124136
Tssr124137 13 114458939 to 114458960 21 - TSS region transcription start site region 124137
Cpgi6121 13 114460351 to 114460682 331 CpG island CpG island 6121
Gm25950 13 114580495 to 114580594 99 + miRNA gene predicted gene, 25950
4930467J12Rik 13 114586513 to 114607084 20571 - lincRNA gene RIKEN cDNA 4930467J12 gene
Cpgi6122 13 114603163 to 114603393 230 CpG island CpG island 6122
Tssr124138 13 114607097 to 114607106 9 - TSS region transcription start site region 124138
4930544M13Rik 13 114607237 to 114697822 90585 + lincRNA gene RIKEN cDNA 4930544M13 gene
4930521G14Rik 13 114635085 to 114636851 1766 unclassified gene RIKEN cDNA 4930521G14 gene
Gm34790 13 114784234 to 114818061 33827 - lncRNA gene predicted gene, 34790
Tssr121203 13 114803272 to 114803314 42 + TSS region transcription start site region 121203
Tssr121204 13 114803321 to 114803334 13 + TSS region transcription start site region 121204
Cpgi6123 13 114817741 to 114818487 746 CpG island CpG island 6123
Tssr121205 13 114818232 to 114818303 71 + TSS region transcription start site region 121205
Mocs2 13 114818237 to 114829420 11183 + protein coding gene molybdenum cofactor synthesis 2
Tssr121206 13 114824632 to 114824646 14 + TSS region transcription start site region 121206
Itga2 13 114835912 to 114932041 96129 - protein coding gene integrin alpha 2
Tssr121207 13 114839285 to 114839296 11 + TSS region transcription start site region 121207
Tssr124139 13 114854119 to 114854126 7 - TSS region transcription start site region 124139
Tssr124140 13 114854133 to 114854145 12 - TSS region transcription start site region 124140
Tssr124141 13 114854444 to 114854449 5 - TSS region transcription start site region 124141
Cpgi6124 13 114896517 to 114896987 470 CpG island CpG island 6124
Gm34845 13 114922899 to 114927758 4859 + lncRNA gene predicted gene, 34845
Cpgi6125 13 114931722 to 114932354 632 CpG island CpG island 6125
Tssr124142 13 114931936 to 114931948 12 - TSS region transcription start site region 124142
Tssr124143 13 114932035 to 114932066 31 - TSS region transcription start site region 124143
Tssr124144 13 114932070 to 114932109 39 - TSS region transcription start site region 124144
Tssr121208 13 114932205 to 114932222 17 + TSS region transcription start site region 121208
Gm47776 13 114934642 to 114935068 426 - pseudogene predicted gene, 47776
6230424C14Rik 13 114953099 to 114955731 2632 unclassified gene RIKEN cDNA 6230424C14 gene
Itga1 13 114958079 to 115101964 143885 - protein coding gene integrin alpha 1
Cpgi6126 13 114966489 to 114966647 158 CpG island CpG island 6126
Gm49395 13 115035273 to 115101921 66648 - protein coding gene predicted gene, 49395
Tssr124145 13 115052729 to 115052736 7 - TSS region transcription start site region 124145
Tssr124146 13 115052741 to 115052755 14 - TSS region transcription start site region 124146
Tssr124147 13 115052757 to 115052770 13 - TSS region transcription start site region 124147
Tssr124148 13 115056521 to 115056525 4 - TSS region transcription start site region 124148
Pelo 13 115088355 to 115090158 1803 - protein coding gene pelota mRNA surveillance and ribosome rescue factor
Cpgi6127 13 115089384 to 115090721 1337 CpG island CpG island 6127
Tssr121209 13 115089466 to 115089486 20 + TSS region transcription start site region 121209
Tssr121210 13 115089492 to 115089516 24 + TSS region transcription start site region 121210
Gm10734 13 115089501 to 115090987 1486 + antisense lncRNA gene predicted gene 10734
Tssr124149 13 115090123 to 115090241 118 - TSS region transcription start site region 124149
Cpgi6128 13 115101400 to 115102172 772 CpG island CpG island 6128
Tssr124150 13 115101535 to 115101544 9 - TSS region transcription start site region 124150
Tssr124151 13 115101558 to 115101573 15 - TSS region transcription start site region 124151
Tssr124152 13 115101618 to 115101656 38 - TSS region transcription start site region 124152
Tssr124153 13 115101679 to 115101715 36 - TSS region transcription start site region 124153
Tssr124154 13 115101717 to 115101744 27 - TSS region transcription start site region 124154
Tssr124155 13 115101754 to 115101778 24 - TSS region transcription start site region 124155
Tssr124156 13 115101795 to 115101802 7 - TSS region transcription start site region 124156
Tssr124157 13 115101804 to 115101824 20 - TSS region transcription start site region 124157
Tssr124158 13 115101872 to 115101890 18 - TSS region transcription start site region 124158
Tssr124159 13 115101891 to 115101907 16 - TSS region transcription start site region 124159
Tssr124160 13 115101909 to 115101984 75 - TSS region transcription start site region 124160
Tssr124161 13 115102138 to 115102141 3 - TSS region transcription start site region 124161
Gm41075 13 115109830 to 115135838 26008 + lncRNA gene predicted gene, 41075
Gm25985 13 115116127 to 115116233 106 + snRNA gene predicted gene, 25985
D13Mit171 13 115156429 to 115156577 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 171
Gm18759 13 115163608 to 115164820 1212 - pseudogene predicted gene, 18759
Gm47891 13 115282201 to 115282675 474 + pseudogene predicted gene, 47891
D13Mit214 13 115354396 to 115354587 191 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 214
Gm6035 13 115528556 to 115529772 1216 - pseudogene predicted gene 6035
Tssr124162 13 115529793 to 115529800 7 - TSS region transcription start site region 124162
D13Mit151 13 115551769 to 115551891 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 151
Gm47892 13 115719304 to 115719499 195 - pseudogene predicted gene, 47892
Gm18135 13 115770936 to 115771453 517 + pseudogene predicted gene, 18135
Gm47893 13 116096035 to 116096300 265 + pseudogene predicted gene, 47893
Rpl34-ps2 13 116153781 to 116154134 353 + pseudogene ribosomal protein L34, pseudogene 2
Cpgi6129 13 116293895 to 116294226 331 CpG island CpG island 6129
Cpgi6130 13 116297136 to 116297635 499 CpG island CpG island 6130
Isl1 13 116298281 to 116309689 11408 - protein coding gene ISL1 transcription factor, LIM/homeodomain
Cpgi6131 13 116303024 to 116303484 460 CpG island CpG island 6131
Cpgi6132 13 116305094 to 116305515 421 CpG island CpG island 6132
Cpgi6133 13 116309331 to 116310451 1120 CpG island CpG island 6133
Tssr124163 13 116309639 to 116309699 60 - TSS region transcription start site region 124163
Tssr121211 13 116309823 to 116309841 18 + TSS region transcription start site region 121211
Gm29764 13 116330763 to 116331538 775 - pseudogene predicted gene, 29764