Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:113616972-115297587

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx18 13 113592179 to 113618564 26385 - protein coding gene sorting nexin 18
Cpgi6110 13 113616798 to 113618792 1994 CpG island CpG island 6110
Tssr124118 13 113617633 to 113617644 11 - TSS region transcription start site region 124118
Tssr124119 13 113618528 to 113618539 11 - TSS region transcription start site region 124119
Tssr124120 13 113618549 to 113618565 16 - TSS region transcription start site region 124120
Tssr121187 13 113660822 to 113660856 34 + TSS region transcription start site region 121187
Hspb3 13 113662896 to 113663676 780 - protein coding gene heat shock protein 3
Cpgi6111 13 113663139 to 113663586 447 CpG island CpG island 6111
Tssr124121 13 113663611 to 113663634 23 - TSS region transcription start site region 124121
Tssr124122 13 113663636 to 113663649 13 - TSS region transcription start site region 124122
Tssr124123 13 113663651 to 113663662 11 - TSS region transcription start site region 124123
Tssr124124 13 113663670 to 113663681 11 - TSS region transcription start site region 124124
Gm34586 13 113672318 to 113686540 14222 + lincRNA gene predicted gene, 34586
D13Mit150 13 113716270 to 113716417 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150
D13Mit150.2 13 113716427 to 113716543 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150.2
Tssr121188 13 113736004 to 113736028 24 + TSS region transcription start site region 121188
Gm31276 13 113736220 to 113750531 14311 + lncRNA gene predicted gene, 31276
Cpgi6112 13 113761298 to 113761477 179 CpG island CpG island 6112
Gm6343 13 113761386 to 113762128 742 - pseudogene predicted gene 6343
Gm47462 13 113764112 to 113764277 165 + pseudogene predicted gene, 47462
Gm47463 13 113764615 to 113764921 306 + pseudogene predicted gene, 47463
Tssr124125 13 113769894 to 113769900 6 - TSS region transcription start site region 124125
Cpgi6113 13 113777262 to 113777560 298 CpG island CpG island 6113
Gm47464 13 113791552 to 113791777 225 - pseudogene predicted gene, 47464
Cpgi6114 13 113794116 to 113795464 1348 CpG island CpG island 6114
Tssr124126 13 113794405 to 113794410 5 - TSS region transcription start site region 124126
Arl15 13 113794508 to 114157462 362954 + protein coding gene ADP-ribosylation factor-like 15
Tssr121189 13 113794515 to 113794572 57 + TSS region transcription start site region 121189
Tssr121190 13 113794604 to 113794618 14 + TSS region transcription start site region 121190
Tssr121191 13 113794619 to 113794630 11 + TSS region transcription start site region 121191
Tssr121192 13 113794646 to 113794671 25 + TSS region transcription start site region 121192
Tssr121193 13 113818166 to 113818181 15 + TSS region transcription start site region 121193
C130040J23Rik 13 113822424 to 113825724 3300 unclassified gene RIKEN cDNA C130040J23 gene
Cpgi6115 13 113870491 to 113870796 305 CpG island CpG island 6115
Tssr121194 13 113870671 to 113870688 17 + TSS region transcription start site region 121194
Tssr124127 13 113880392 to 113880398 6 - TSS region transcription start site region 124127
Tssr124128 13 113881079 to 113881091 12 - TSS region transcription start site region 124128
Tssr121195 13 113881187 to 113881220 33 + TSS region transcription start site region 121195
6720427H10Rik 13 113972885 to 113976591 3706 unclassified gene RIKEN cDNA 6720427H10 gene
Tssr121196 13 113981481 to 113981495 14 + TSS region transcription start site region 121196
Tssr121197 13 113989750 to 113989753 3 + TSS region transcription start site region 121197
Tssr121198 13 114048487 to 114048492 5 + TSS region transcription start site region 121198
B430203I24Rik 13 114096296 to 114099562 3266 unclassified gene RIKEN cDNA B430203I24 gene
Tssr121199 13 114111174 to 114111176 2 + TSS region transcription start site region 121199
Tssr121200 13 114113564 to 114113568 4 + TSS region transcription start site region 121200
Gm47479 13 114118441 to 114120416 1975 - unclassified gene predicted gene, 47479
A430090L17Rik 13 114124348 to 114151592 27244 - antisense lncRNA gene RIKEN cDNA A430090L17 gene
Tssr124129 13 114149748 to 114149762 14 - TSS region transcription start site region 124129
A230102O21Rik 13 114153222 to 114154258 1036 unclassified gene RIKEN cDNA A230102O21 gene
Tssr124130 13 114156984 to 114157010 26 - TSS region transcription start site region 124130
Gm41072 13 114208989 to 114218138 9149 + lncRNA gene predicted gene, 41072
Gm37907 13 114227111 to 114237432 10321 + unclassified gene predicted gene, 37907
4631422I05Rik 13 114240878 to 114242640 1762 - unclassified gene RIKEN cDNA 4631422I05 gene
Gm47558 13 114281668 to 114284381 2713 - unclassified gene predicted gene, 47558
Ndufs4 13 114287795 to 114388094 100299 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S4
B330018G23Rik 13 114299765 to 114303862 4097 unclassified gene RIKEN cDNA B330018G23 gene
Tssr121201 13 114335072 to 114335076 4 + TSS region transcription start site region 121201
Tssr124131 13 114337122 to 114337126 4 - TSS region transcription start site region 124131
D13Mit31 13 114337990 to 114338089 99 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 31
Cpgi6116 13 114387625 to 114388187 562 CpG island CpG island 6116
Tssr124132 13 114388057 to 114388089 32 - TSS region transcription start site region 124132
Tssr124133 13 114399021 to 114399036 15 - TSS region transcription start site region 124133
Cpgi6117 13 114408815 to 114409141 326 CpG island CpG island 6117
Gm47569 13 114435409 to 114436699 1290 - pseudogene predicted gene, 47569
Gm41073 13 114437793 to 114438214 421 - pseudogene predicted gene, 41073
Cpgi6118 13 114443883 to 114444167 284 CpG island CpG island 6118
Tssr121202 13 114447452 to 114447461 9 + TSS region transcription start site region 121202
Fst 13 114452290 to 114458951 6661 - protein coding gene follistatin
Tssr124134 13 114456579 to 114456589 10 - TSS region transcription start site region 124134
Gm41074 13 114456760 to 114474219 17459 + lncRNA gene predicted gene, 41074
Cpgi6119 13 114456972 to 114457587 615 CpG island CpG island 6119
Cpgi6120 13 114458136 to 114459768 1632 CpG island CpG island 6120
Gm47040 13 114458663 to 114462047 3384 + antisense lncRNA gene predicted gene, 47040
Tssr124135 13 114458720 to 114458736 16 - TSS region transcription start site region 124135
Tssr124136 13 114458833 to 114458844 11 - TSS region transcription start site region 124136
Tssr124137 13 114458939 to 114458960 21 - TSS region transcription start site region 124137
Cpgi6121 13 114460351 to 114460682 331 CpG island CpG island 6121
Gm25950 13 114580495 to 114580594 99 + miRNA gene predicted gene, 25950
4930467J12Rik 13 114586513 to 114607084 20571 - lincRNA gene RIKEN cDNA 4930467J12 gene
Cpgi6122 13 114603163 to 114603393 230 CpG island CpG island 6122
Tssr124138 13 114607097 to 114607106 9 - TSS region transcription start site region 124138
4930544M13Rik 13 114607237 to 114697822 90585 + lincRNA gene RIKEN cDNA 4930544M13 gene
4930521G14Rik 13 114635085 to 114636851 1766 unclassified gene RIKEN cDNA 4930521G14 gene
Gm34790 13 114784234 to 114818061 33827 - lncRNA gene predicted gene, 34790
Tssr121203 13 114803272 to 114803314 42 + TSS region transcription start site region 121203
Tssr121204 13 114803321 to 114803334 13 + TSS region transcription start site region 121204
Cpgi6123 13 114817741 to 114818487 746 CpG island CpG island 6123
Tssr121205 13 114818232 to 114818303 71 + TSS region transcription start site region 121205
Mocs2 13 114818237 to 114829420 11183 + protein coding gene molybdenum cofactor synthesis 2
Tssr121206 13 114824632 to 114824646 14 + TSS region transcription start site region 121206
Itga2 13 114835912 to 114932041 96129 - protein coding gene integrin alpha 2
Tssr121207 13 114839285 to 114839296 11 + TSS region transcription start site region 121207
Tssr124139 13 114854119 to 114854126 7 - TSS region transcription start site region 124139
Tssr124140 13 114854133 to 114854145 12 - TSS region transcription start site region 124140
Tssr124141 13 114854444 to 114854449 5 - TSS region transcription start site region 124141
Cpgi6124 13 114896517 to 114896987 470 CpG island CpG island 6124
Gm34845 13 114922899 to 114927758 4859 + lncRNA gene predicted gene, 34845
Cpgi6125 13 114931722 to 114932354 632 CpG island CpG island 6125
Tssr124142 13 114931936 to 114931948 12 - TSS region transcription start site region 124142
Tssr124143 13 114932035 to 114932066 31 - TSS region transcription start site region 124143
Tssr124144 13 114932070 to 114932109 39 - TSS region transcription start site region 124144
Tssr121208 13 114932205 to 114932222 17 + TSS region transcription start site region 121208
Gm47776 13 114934642 to 114935068 426 - pseudogene predicted gene, 47776
6230424C14Rik 13 114953099 to 114955731 2632 unclassified gene RIKEN cDNA 6230424C14 gene
Itga1 13 114958079 to 115101964 143885 - protein coding gene integrin alpha 1
Cpgi6126 13 114966489 to 114966647 158 CpG island CpG island 6126
Gm49395 13 115035273 to 115101921 66648 - protein coding gene predicted gene, 49395
Tssr124145 13 115052729 to 115052736 7 - TSS region transcription start site region 124145
Tssr124146 13 115052741 to 115052755 14 - TSS region transcription start site region 124146
Tssr124147 13 115052757 to 115052770 13 - TSS region transcription start site region 124147
Tssr124148 13 115056521 to 115056525 4 - TSS region transcription start site region 124148
Pelo 13 115088355 to 115090158 1803 - protein coding gene pelota mRNA surveillance and ribosome rescue factor
Cpgi6127 13 115089384 to 115090721 1337 CpG island CpG island 6127
Tssr121209 13 115089466 to 115089486 20 + TSS region transcription start site region 121209
Tssr121210 13 115089492 to 115089516 24 + TSS region transcription start site region 121210
Gm10734 13 115089501 to 115090987 1486 + antisense lncRNA gene predicted gene 10734
Tssr124149 13 115090123 to 115090241 118 - TSS region transcription start site region 124149
Cpgi6128 13 115101400 to 115102172 772 CpG island CpG island 6128
Tssr124150 13 115101535 to 115101544 9 - TSS region transcription start site region 124150
Tssr124151 13 115101558 to 115101573 15 - TSS region transcription start site region 124151
Tssr124152 13 115101618 to 115101656 38 - TSS region transcription start site region 124152
Tssr124153 13 115101679 to 115101715 36 - TSS region transcription start site region 124153
Tssr124154 13 115101717 to 115101744 27 - TSS region transcription start site region 124154
Tssr124155 13 115101754 to 115101778 24 - TSS region transcription start site region 124155
Tssr124156 13 115101795 to 115101802 7 - TSS region transcription start site region 124156
Tssr124157 13 115101804 to 115101824 20 - TSS region transcription start site region 124157
Tssr124158 13 115101872 to 115101890 18 - TSS region transcription start site region 124158
Tssr124159 13 115101891 to 115101907 16 - TSS region transcription start site region 124159
Tssr124160 13 115101909 to 115101984 75 - TSS region transcription start site region 124160
Tssr124161 13 115102138 to 115102141 3 - TSS region transcription start site region 124161
Gm41075 13 115109830 to 115135838 26008 + lncRNA gene predicted gene, 41075
Gm25985 13 115116127 to 115116233 106 + snRNA gene predicted gene, 25985
D13Mit171 13 115156429 to 115156577 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 171
Gm18759 13 115163608 to 115164820 1212 - pseudogene predicted gene, 18759
Gm47891 13 115282201 to 115282675 474 + pseudogene predicted gene, 47891