Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:113133088-113673188

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr124109 13 113136022 to 113136048 26 - TSS region transcription start site region 124109
1700084D21Rik 13 113136083 to 113144012 7929 + lincRNA gene RIKEN cDNA 1700084D21 gene
Tssr121177 13 113136156 to 113136167 11 + TSS region transcription start site region 121177
Tssr121178 13 113139269 to 113139293 24 + TSS region transcription start site region 121178
Gm49564 13 113150677 to 113151450 773 - pseudogene predicted gene, 49564
Tssr124110 13 113155502 to 113155546 44 - TSS region transcription start site region 124110
Gzmk 13 113171874 to 113180897 9023 - protein coding gene granzyme K
Tssr124111 13 113180956 to 113180967 11 - TSS region transcription start site region 124111
Gm41069 13 113188439 to 113225967 37528 - lncRNA gene predicted gene, 41069
Tssr121179 13 113209486 to 113209499 13 + TSS region transcription start site region 121179
Esm1 13 113209659 to 113218098 8439 + protein coding gene endothelial cell-specific molecule 1
Tssr121180 13 113209757 to 113209772 15 + TSS region transcription start site region 121180
Cpgi6108 13 113209886 to 113210155 269 CpG island CpG island 6108
Tssr121181 13 113209944 to 113209959 15 + TSS region transcription start site region 121181
Tssr121182 13 113209966 to 113209980 14 + TSS region transcription start site region 121182
Tssr121183 13 113211321 to 113211325 4 + TSS region transcription start site region 121183
BC067074 13 113292423 to 113370515 78092 + protein coding gene cDNA sequence BC067074
Cpgi6109 13 113292822 to 113293737 915 CpG island CpG island 6109
Tssr121184 13 113293156 to 113293204 48 + TSS region transcription start site region 121184
Tssr121185 13 113293206 to 113293223 17 + TSS region transcription start site region 121185
Gm41070 13 113355672 to 113365091 9419 - lncRNA gene predicted gene, 41070
Gm22385 13 113403088 to 113403188 100 + rRNA gene predicted gene, 22385
Gm41071 13 113420336 to 113423887 3551 - lincRNA gene predicted gene, 41071
4921509O07Rik 13 113446288 to 113502844 56556 - lincRNA gene RIKEN cDNA 4921509O07 gene
Gm31191 13 113479975 to 113480243 268 - pseudogene predicted gene, 31191
Gm47426 13 113488956 to 113489135 179 + pseudogene predicted gene, 47426
Gm34471 13 113507828 to 113538766 30938 - lincRNA gene predicted gene, 34471
Gm34528 13 113523554 to 113527237 3683 - lncRNA gene predicted gene, 34528
Tssr124112 13 113567868 to 113567871 3 - TSS region transcription start site region 124112
Snx18 13 113592179 to 113618564 26385 - protein coding gene sorting nexin 18
Tssr124113 13 113593692 to 113593741 49 - TSS region transcription start site region 124113
Tssr124114 13 113600726 to 113600731 5 - TSS region transcription start site region 124114
Tssr124115 13 113600739 to 113600750 11 - TSS region transcription start site region 124115
Tssr124116 13 113600760 to 113600769 9 - TSS region transcription start site region 124116
Tssr4180 13 113614150 to 113614171 21 + TSS region transcription start site region 4180
Tssr4181 13 113614209 to 113614225 16 + TSS region transcription start site region 4181
Tssr124117 13 113615064 to 113615089 25 - TSS region transcription start site region 124117
Tssr121186 13 113615778 to 113615789 11 + TSS region transcription start site region 121186
Cpgi6110 13 113616798 to 113618792 1994 CpG island CpG island 6110
Tssr124118 13 113617633 to 113617644 11 - TSS region transcription start site region 124118
Tssr124119 13 113618528 to 113618539 11 - TSS region transcription start site region 124119
Tssr124120 13 113618549 to 113618565 16 - TSS region transcription start site region 124120
Tssr121187 13 113660822 to 113660856 34 + TSS region transcription start site region 121187
Hspb3 13 113662896 to 113663676 780 - protein coding gene heat shock protein 3
Cpgi6111 13 113663139 to 113663586 447 CpG island CpG island 6111
Tssr124121 13 113663611 to 113663634 23 - TSS region transcription start site region 124121
Tssr124122 13 113663636 to 113663649 13 - TSS region transcription start site region 124122
Tssr124123 13 113663651 to 113663662 11 - TSS region transcription start site region 124123
Tssr124124 13 113663670 to 113663681 11 - TSS region transcription start site region 124124
Gm34586 13 113672318 to 113686540 14222 + lincRNA gene predicted gene, 34586