Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:113099508-114852462

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gzma 13 113093827 to 113100981 7154 - protein coding gene granzyme A
Tssr124098 13 113100971 to 113100988 17 - TSS region transcription start site region 124098
Tssr121176 13 113101126 to 113101130 4 + TSS region transcription start site region 121176
Tssr124099 13 113101130 to 113101143 13 - TSS region transcription start site region 124099
Tssr124100 13 113101148 to 113101159 11 - TSS region transcription start site region 124100
Tssr124101 13 113101190 to 113101197 7 - TSS region transcription start site region 124101
Tssr124102 13 113101227 to 113101236 9 - TSS region transcription start site region 124102
Tssr124103 13 113101876 to 113101895 19 - TSS region transcription start site region 124103
Tssr124104 13 113101913 to 113101925 12 - TSS region transcription start site region 124104
Tssr124105 13 113101935 to 113101950 15 - TSS region transcription start site region 124105
Tssr124106 13 113101962 to 113101972 10 - TSS region transcription start site region 124106
Tssr124107 13 113101986 to 113101993 7 - TSS region transcription start site region 124107
Gm9848 13 113108073 to 113108331 258 + pseudogene predicted gene 9848
Tssr124108 13 113110645 to 113110648 3 - TSS region transcription start site region 124108
Tssr124109 13 113136022 to 113136048 26 - TSS region transcription start site region 124109
1700084D21Rik 13 113136083 to 113144012 7929 + lincRNA gene RIKEN cDNA 1700084D21 gene
Tssr121177 13 113136156 to 113136167 11 + TSS region transcription start site region 121177
Tssr121178 13 113139269 to 113139293 24 + TSS region transcription start site region 121178
Gm49564 13 113150677 to 113151450 773 - pseudogene predicted gene, 49564
Tssr124110 13 113155502 to 113155546 44 - TSS region transcription start site region 124110
Gzmk 13 113171874 to 113180897 9023 - protein coding gene granzyme K
Tssr124111 13 113180956 to 113180967 11 - TSS region transcription start site region 124111
Gm41069 13 113188439 to 113225967 37528 - lncRNA gene predicted gene, 41069
Tssr121179 13 113209486 to 113209499 13 + TSS region transcription start site region 121179
Esm1 13 113209659 to 113218098 8439 + protein coding gene endothelial cell-specific molecule 1
Tssr121180 13 113209757 to 113209772 15 + TSS region transcription start site region 121180
Cpgi6108 13 113209886 to 113210155 269 CpG island CpG island 6108
Tssr121181 13 113209944 to 113209959 15 + TSS region transcription start site region 121181
Tssr121182 13 113209966 to 113209980 14 + TSS region transcription start site region 121182
Tssr121183 13 113211321 to 113211325 4 + TSS region transcription start site region 121183
BC067074 13 113292423 to 113370515 78092 + protein coding gene cDNA sequence BC067074
Cpgi6109 13 113292822 to 113293737 915 CpG island CpG island 6109
Tssr121184 13 113293156 to 113293204 48 + TSS region transcription start site region 121184
Tssr121185 13 113293206 to 113293223 17 + TSS region transcription start site region 121185
Gm41070 13 113355672 to 113365091 9419 - lncRNA gene predicted gene, 41070
Gm22385 13 113403088 to 113403188 100 + rRNA gene predicted gene, 22385
Gm41071 13 113420336 to 113423887 3551 - lincRNA gene predicted gene, 41071
4921509O07Rik 13 113446288 to 113502844 56556 - lincRNA gene RIKEN cDNA 4921509O07 gene
Gm31191 13 113479975 to 113480243 268 - pseudogene predicted gene, 31191
Gm47426 13 113488956 to 113489135 179 + pseudogene predicted gene, 47426
Gm34471 13 113507828 to 113538766 30938 - lincRNA gene predicted gene, 34471
Gm34528 13 113523554 to 113527237 3683 - lncRNA gene predicted gene, 34528
Tssr124112 13 113567868 to 113567871 3 - TSS region transcription start site region 124112
Snx18 13 113592179 to 113618564 26385 - protein coding gene sorting nexin 18
Tssr124113 13 113593692 to 113593741 49 - TSS region transcription start site region 124113
Tssr124114 13 113600726 to 113600731 5 - TSS region transcription start site region 124114
Tssr124115 13 113600739 to 113600750 11 - TSS region transcription start site region 124115
Tssr124116 13 113600760 to 113600769 9 - TSS region transcription start site region 124116
Tssr4180 13 113614150 to 113614171 21 + TSS region transcription start site region 4180
Tssr4181 13 113614209 to 113614225 16 + TSS region transcription start site region 4181
Tssr124117 13 113615064 to 113615089 25 - TSS region transcription start site region 124117
Tssr121186 13 113615778 to 113615789 11 + TSS region transcription start site region 121186
Cpgi6110 13 113616798 to 113618792 1994 CpG island CpG island 6110
Tssr124118 13 113617633 to 113617644 11 - TSS region transcription start site region 124118
Tssr124119 13 113618528 to 113618539 11 - TSS region transcription start site region 124119
Tssr124120 13 113618549 to 113618565 16 - TSS region transcription start site region 124120
Tssr121187 13 113660822 to 113660856 34 + TSS region transcription start site region 121187
Hspb3 13 113662896 to 113663676 780 - protein coding gene heat shock protein 3
Cpgi6111 13 113663139 to 113663586 447 CpG island CpG island 6111
Tssr124121 13 113663611 to 113663634 23 - TSS region transcription start site region 124121
Tssr124122 13 113663636 to 113663649 13 - TSS region transcription start site region 124122
Tssr124123 13 113663651 to 113663662 11 - TSS region transcription start site region 124123
Tssr124124 13 113663670 to 113663681 11 - TSS region transcription start site region 124124
Gm34586 13 113672318 to 113686540 14222 + lincRNA gene predicted gene, 34586
D13Mit150 13 113716270 to 113716417 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150
D13Mit150.2 13 113716427 to 113716543 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150.2
Tssr121188 13 113736004 to 113736028 24 + TSS region transcription start site region 121188
Gm31276 13 113736220 to 113750531 14311 + lncRNA gene predicted gene, 31276
Cpgi6112 13 113761298 to 113761477 179 CpG island CpG island 6112
Gm6343 13 113761386 to 113762128 742 - pseudogene predicted gene 6343
Gm47462 13 113764112 to 113764277 165 + pseudogene predicted gene, 47462
Gm47463 13 113764615 to 113764921 306 + pseudogene predicted gene, 47463
Tssr124125 13 113769894 to 113769900 6 - TSS region transcription start site region 124125
Cpgi6113 13 113777262 to 113777560 298 CpG island CpG island 6113
Gm47464 13 113791552 to 113791777 225 - pseudogene predicted gene, 47464
Cpgi6114 13 113794116 to 113795464 1348 CpG island CpG island 6114
Tssr124126 13 113794405 to 113794410 5 - TSS region transcription start site region 124126
Arl15 13 113794508 to 114157462 362954 + protein coding gene ADP-ribosylation factor-like 15
Tssr121189 13 113794515 to 113794572 57 + TSS region transcription start site region 121189
Tssr121190 13 113794604 to 113794618 14 + TSS region transcription start site region 121190
Tssr121191 13 113794619 to 113794630 11 + TSS region transcription start site region 121191
Tssr121192 13 113794646 to 113794671 25 + TSS region transcription start site region 121192
Tssr121193 13 113818166 to 113818181 15 + TSS region transcription start site region 121193
C130040J23Rik 13 113822424 to 113825724 3300 unclassified gene RIKEN cDNA C130040J23 gene
Cpgi6115 13 113870491 to 113870796 305 CpG island CpG island 6115
Tssr121194 13 113870671 to 113870688 17 + TSS region transcription start site region 121194
Tssr124127 13 113880392 to 113880398 6 - TSS region transcription start site region 124127
Tssr124128 13 113881079 to 113881091 12 - TSS region transcription start site region 124128
Tssr121195 13 113881187 to 113881220 33 + TSS region transcription start site region 121195
6720427H10Rik 13 113972885 to 113976591 3706 unclassified gene RIKEN cDNA 6720427H10 gene
Tssr121196 13 113981481 to 113981495 14 + TSS region transcription start site region 121196
Tssr121197 13 113989750 to 113989753 3 + TSS region transcription start site region 121197
Tssr121198 13 114048487 to 114048492 5 + TSS region transcription start site region 121198
B430203I24Rik 13 114096296 to 114099562 3266 unclassified gene RIKEN cDNA B430203I24 gene
Tssr121199 13 114111174 to 114111176 2 + TSS region transcription start site region 121199
Tssr121200 13 114113564 to 114113568 4 + TSS region transcription start site region 121200
Gm47479 13 114118441 to 114120416 1975 - unclassified gene predicted gene, 47479
A430090L17Rik 13 114124348 to 114151592 27244 - antisense lncRNA gene RIKEN cDNA A430090L17 gene
Tssr124129 13 114149748 to 114149762 14 - TSS region transcription start site region 124129
A230102O21Rik 13 114153222 to 114154258 1036 unclassified gene RIKEN cDNA A230102O21 gene
Tssr124130 13 114156984 to 114157010 26 - TSS region transcription start site region 124130
Gm41072 13 114208989 to 114218138 9149 + lncRNA gene predicted gene, 41072
Gm37907 13 114227111 to 114237432 10321 + unclassified gene predicted gene, 37907
4631422I05Rik 13 114240878 to 114242640 1762 - unclassified gene RIKEN cDNA 4631422I05 gene
Gm47558 13 114281668 to 114284381 2713 - unclassified gene predicted gene, 47558
Ndufs4 13 114287795 to 114388094 100299 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S4
B330018G23Rik 13 114299765 to 114303862 4097 unclassified gene RIKEN cDNA B330018G23 gene
Tssr121201 13 114335072 to 114335076 4 + TSS region transcription start site region 121201
Tssr124131 13 114337122 to 114337126 4 - TSS region transcription start site region 124131
D13Mit31 13 114337990 to 114338089 99 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 31
Cpgi6116 13 114387625 to 114388187 562 CpG island CpG island 6116
Tssr124132 13 114388057 to 114388089 32 - TSS region transcription start site region 124132
Tssr124133 13 114399021 to 114399036 15 - TSS region transcription start site region 124133
Cpgi6117 13 114408815 to 114409141 326 CpG island CpG island 6117
Gm47569 13 114435409 to 114436699 1290 - pseudogene predicted gene, 47569
Gm41073 13 114437793 to 114438214 421 - pseudogene predicted gene, 41073
Cpgi6118 13 114443883 to 114444167 284 CpG island CpG island 6118
Tssr121202 13 114447452 to 114447461 9 + TSS region transcription start site region 121202
Fst 13 114452290 to 114458951 6661 - protein coding gene follistatin
Tssr124134 13 114456579 to 114456589 10 - TSS region transcription start site region 124134
Gm41074 13 114456760 to 114474219 17459 + lncRNA gene predicted gene, 41074
Cpgi6119 13 114456972 to 114457587 615 CpG island CpG island 6119
Cpgi6120 13 114458136 to 114459768 1632 CpG island CpG island 6120
Gm47040 13 114458663 to 114462047 3384 + antisense lncRNA gene predicted gene, 47040
Tssr124135 13 114458720 to 114458736 16 - TSS region transcription start site region 124135
Tssr124136 13 114458833 to 114458844 11 - TSS region transcription start site region 124136
Tssr124137 13 114458939 to 114458960 21 - TSS region transcription start site region 124137
Cpgi6121 13 114460351 to 114460682 331 CpG island CpG island 6121
Gm25950 13 114580495 to 114580594 99 + miRNA gene predicted gene, 25950
4930467J12Rik 13 114586513 to 114607084 20571 - lincRNA gene RIKEN cDNA 4930467J12 gene
Cpgi6122 13 114603163 to 114603393 230 CpG island CpG island 6122
Tssr124138 13 114607097 to 114607106 9 - TSS region transcription start site region 124138
4930544M13Rik 13 114607237 to 114697822 90585 + lincRNA gene RIKEN cDNA 4930544M13 gene
4930521G14Rik 13 114635085 to 114636851 1766 unclassified gene RIKEN cDNA 4930521G14 gene
Gm34790 13 114784234 to 114818061 33827 - lncRNA gene predicted gene, 34790
Tssr121203 13 114803272 to 114803314 42 + TSS region transcription start site region 121203
Tssr121204 13 114803321 to 114803334 13 + TSS region transcription start site region 121204
Cpgi6123 13 114817741 to 114818487 746 CpG island CpG island 6123
Tssr121205 13 114818232 to 114818303 71 + TSS region transcription start site region 121205
Mocs2 13 114818237 to 114829420 11183 + protein coding gene molybdenum cofactor synthesis 2
Tssr121206 13 114824632 to 114824646 14 + TSS region transcription start site region 121206
Itga2 13 114835912 to 114932041 96129 - protein coding gene integrin alpha 2
Tssr121207 13 114839285 to 114839296 11 + TSS region transcription start site region 121207