Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:113053052-113610515

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc20b 13 113035111 to 113091195 56084 + protein coding gene cell division cycle 20B
Tssr124088 13 113071156 to 113071180 24 - TSS region transcription start site region 124088
Tssr4179 13 113071340 to 113071358 18 + TSS region transcription start site region 4179
Tssr121168 13 113071462 to 113071477 15 + TSS region transcription start site region 121168
4930563N14Rik 13 113078106 to 113079147 1041 - antisense lncRNA gene RIKEN cDNA 4930563N14 gene
Tssr124089 13 113079106 to 113079113 7 - TSS region transcription start site region 124089
Tssr124090 13 113079120 to 113079127 7 - TSS region transcription start site region 124090
Tssr124091 13 113079148 to 113079155 7 - TSS region transcription start site region 124091
Tssr124092 13 113079173 to 113079184 11 - TSS region transcription start site region 124092
Tssr124093 13 113079191 to 113079198 7 - TSS region transcription start site region 124093
Tssr121169 13 113086232 to 113086252 20 + TSS region transcription start site region 121169
Tssr124094 13 113087327 to 113087351 24 - TSS region transcription start site region 124094
Tssr121170 13 113087916 to 113087944 28 + TSS region transcription start site region 121170
Tssr121171 13 113093824 to 113093827 3 + TSS region transcription start site region 121171
Gzma 13 113093827 to 113100981 7154 - protein coding gene granzyme A
Tssr124095 13 113093871 to 113093888 17 - TSS region transcription start site region 124095
Tssr121172 13 113093963 to 113094012 49 + TSS region transcription start site region 121172
Tssr121173 13 113095908 to 113095920 12 + TSS region transcription start site region 121173
Tssr121174 13 113096197 to 113096239 42 + TSS region transcription start site region 121174
Tssr124096 13 113096304 to 113096317 13 - TSS region transcription start site region 124096
Tssr124097 13 113098339 to 113098353 14 - TSS region transcription start site region 124097
Tssr121175 13 113098347 to 113098359 12 + TSS region transcription start site region 121175
Tssr124098 13 113100971 to 113100988 17 - TSS region transcription start site region 124098
Tssr121176 13 113101126 to 113101130 4 + TSS region transcription start site region 121176
Tssr124099 13 113101130 to 113101143 13 - TSS region transcription start site region 124099
Tssr124100 13 113101148 to 113101159 11 - TSS region transcription start site region 124100
Tssr124101 13 113101190 to 113101197 7 - TSS region transcription start site region 124101
Tssr124102 13 113101227 to 113101236 9 - TSS region transcription start site region 124102
Tssr124103 13 113101876 to 113101895 19 - TSS region transcription start site region 124103
Tssr124104 13 113101913 to 113101925 12 - TSS region transcription start site region 124104
Tssr124105 13 113101935 to 113101950 15 - TSS region transcription start site region 124105
Tssr124106 13 113101962 to 113101972 10 - TSS region transcription start site region 124106
Tssr124107 13 113101986 to 113101993 7 - TSS region transcription start site region 124107
Gm9848 13 113108073 to 113108331 258 + pseudogene predicted gene 9848
Tssr124108 13 113110645 to 113110648 3 - TSS region transcription start site region 124108
Tssr124109 13 113136022 to 113136048 26 - TSS region transcription start site region 124109
1700084D21Rik 13 113136083 to 113144012 7929 + lincRNA gene RIKEN cDNA 1700084D21 gene
Tssr121177 13 113136156 to 113136167 11 + TSS region transcription start site region 121177
Tssr121178 13 113139269 to 113139293 24 + TSS region transcription start site region 121178
Gm49564 13 113150677 to 113151450 773 - pseudogene predicted gene, 49564
Tssr124110 13 113155502 to 113155546 44 - TSS region transcription start site region 124110
Gzmk 13 113171874 to 113180897 9023 - protein coding gene granzyme K
Tssr124111 13 113180956 to 113180967 11 - TSS region transcription start site region 124111
Gm41069 13 113188439 to 113225967 37528 - lncRNA gene predicted gene, 41069
Tssr121179 13 113209486 to 113209499 13 + TSS region transcription start site region 121179
Esm1 13 113209659 to 113218098 8439 + protein coding gene endothelial cell-specific molecule 1
Tssr121180 13 113209757 to 113209772 15 + TSS region transcription start site region 121180
Cpgi6108 13 113209886 to 113210155 269 CpG island CpG island 6108
Tssr121181 13 113209944 to 113209959 15 + TSS region transcription start site region 121181
Tssr121182 13 113209966 to 113209980 14 + TSS region transcription start site region 121182
Tssr121183 13 113211321 to 113211325 4 + TSS region transcription start site region 121183
BC067074 13 113292423 to 113370515 78092 + protein coding gene cDNA sequence BC067074
Cpgi6109 13 113292822 to 113293737 915 CpG island CpG island 6109
Tssr121184 13 113293156 to 113293204 48 + TSS region transcription start site region 121184
Tssr121185 13 113293206 to 113293223 17 + TSS region transcription start site region 121185
Gm41070 13 113355672 to 113365091 9419 - lncRNA gene predicted gene, 41070
Gm22385 13 113403088 to 113403188 100 + rRNA gene predicted gene, 22385
Gm41071 13 113420336 to 113423887 3551 - lincRNA gene predicted gene, 41071
4921509O07Rik 13 113446288 to 113502844 56556 - lincRNA gene RIKEN cDNA 4921509O07 gene
Gm31191 13 113479975 to 113480243 268 - pseudogene predicted gene, 31191
Gm47426 13 113488956 to 113489135 179 + pseudogene predicted gene, 47426
Gm34471 13 113507828 to 113538766 30938 - lincRNA gene predicted gene, 34471
Gm34528 13 113523554 to 113527237 3683 - lncRNA gene predicted gene, 34528
Tssr124112 13 113567868 to 113567871 3 - TSS region transcription start site region 124112
Snx18 13 113592179 to 113618564 26385 - protein coding gene sorting nexin 18
Tssr124113 13 113593692 to 113593741 49 - TSS region transcription start site region 124113
Tssr124114 13 113600726 to 113600731 5 - TSS region transcription start site region 124114
Tssr124115 13 113600739 to 113600750 11 - TSS region transcription start site region 124115
Tssr124116 13 113600760 to 113600769 9 - TSS region transcription start site region 124116