Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112728166-114908181

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239 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
lg 13 110563270 to 112761890 2198620 heritable phenotypic marker lid gap
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Tssr4177 13 112733684 to 112733689 5 + TSS region transcription start site region 4177
Cpgi6099 13 112744388 to 112744559 171 CpG island CpG island 6099
D13Mit293 13 112745437 to 112745556 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 293
Tssr124075 13 112746077 to 112746080 3 - TSS region transcription start site region 124075
Tssr121145 13 112752402 to 112752406 4 + TSS region transcription start site region 121145
Tssr124076 13 112753486 to 112753494 8 - TSS region transcription start site region 124076
Tssr124077 13 112760507 to 112760514 7 - TSS region transcription start site region 124077
D13Mit196 13 112761758 to 112761890 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 196
Mvwf4 13 112761890 to 20293442 -92468448 QTL modifier of von Willebrand factor 4
Tssr124078 13 112762706 to 112762710 4 - TSS region transcription start site region 124078
Tssr121146 13 112763978 to 112763984 6 + TSS region transcription start site region 121146
Gm47850 13 112764848 to 112765616 768 + lincRNA gene predicted gene, 47850
Gm41067 13 112768458 to 112799371 30913 + lncRNA gene predicted gene, 41067
1700125C05Rik 13 112800378 to 112800728 350 unclassified gene RIKEN cDNA 1700125C05 gene
Cpgi6100 13 112800450 to 112801922 1472 CpG island CpG island 6100
Tssr124079 13 112800577 to 112800588 11 - TSS region transcription start site region 124079
Tssr121147 13 112800776 to 112800781 5 + TSS region transcription start site region 121147
Tssr121148 13 112800786 to 112800822 36 + TSS region transcription start site region 121148
Plpp1 13 112800792 to 112867894 67102 + protein coding gene phospholipid phosphatase 1
Tssr4178 13 112800847 to 112800850 3 + TSS region transcription start site region 4178
Tssr121149 13 112800851 to 112800876 25 + TSS region transcription start site region 121149
Tssr121150 13 112800878 to 112800903 25 + TSS region transcription start site region 121150
Tssr121151 13 112800927 to 112800941 14 + TSS region transcription start site region 121151
Tssr121152 13 112800960 to 112800965 5 + TSS region transcription start site region 121152
Tssr121153 13 112801155 to 112801183 28 + TSS region transcription start site region 121153
D13Mit262 13 112814230 to 112814354 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 262
Tssr121154 13 112853231 to 112853252 21 + TSS region transcription start site region 121154
Mtrex 13 112867780 to 112927380 59600 - protein coding gene Mtr4 exosome RNA helicase
Tssr124080 13 112874124 to 112874133 9 - TSS region transcription start site region 124080
Gm26943 13 112884226 to 112885182 956 + pseudogene predicted gene, 26943
Cpgi6101 13 112926949 to 112928101 1152 CpG island CpG island 6101
Tssr124081 13 112927356 to 112927390 34 - TSS region transcription start site region 124081
Tssr124082 13 112927463 to 112927470 7 - TSS region transcription start site region 124082
Tssr124083 13 112927598 to 112927640 42 - TSS region transcription start site region 124083
Tssr121155 13 112927642 to 112927735 93 + TSS region transcription start site region 121155
Dhx29 13 112927793 to 112969187 41394 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 29
Tssr121156 13 112937554 to 112937560 6 + TSS region transcription start site region 121156
Gm8795 13 112937585 to 112938023 438 + pseudogene predicted gene 8795
Cpgi6102 13 112987148 to 112989165 2017 CpG island CpG island 6102
Ccno 13 112987802 to 112990777 2975 + protein coding gene cyclin O
Tssr121157 13 112987822 to 112987838 16 + TSS region transcription start site region 121157
Tssr121158 13 112987952 to 112987977 25 + TSS region transcription start site region 121158
Cpgi6103 13 112989464 to 112990020 556 CpG island CpG island 6103
Cpgi6104 13 112993482 to 112994653 1171 CpG island CpG island 6104
Tssr121159 13 112993793 to 112993820 27 + TSS region transcription start site region 121159
Tssr121160 13 112993822 to 112993838 16 + TSS region transcription start site region 121160
Tssr121161 13 112993840 to 112993869 29 + TSS region transcription start site region 121161
Mcidas 13 112993845 to 113000394 6549 + protein coding gene multiciliate differentiation and DNA synthesis associated cell cycle protein
Tssr121162 13 112993884 to 112993895 11 + TSS region transcription start site region 121162
6330437I11Rik 13 112997785 to 112999248 1463 unclassified non-coding RNA gene RIKEN cDNA 6330437I11 gene
Cpgi6105 13 112998363 to 112999183 820 CpG island CpG island 6105
Cpgi6106 13 113031745 to 113032556 811 CpG island CpG island 6106
Tssr121163 13 113032197 to 113032201 4 + TSS region transcription start site region 121163
Tssr121164 13 113033039 to 113033054 15 + TSS region transcription start site region 121164
Cpgi6107 13 113034896 to 113035526 630 CpG island CpG island 6107
Cdc20b 13 113035111 to 113091195 56084 + protein coding gene cell division cycle 20B
Tssr121165 13 113035227 to 113035231 4 + TSS region transcription start site region 121165
Mirc34 13 113035983 to 113037624 1641 complex/cluster/region microRNA cluster 34, including Mir449a through Mir449c
Mir449c 13 113035983 to 113036091 108 + miRNA gene microRNA 449c
Mir449b 13 113037419 to 113037498 79 + miRNA gene microRNA 449b
Mir449a 13 113037534 to 113037624 90 + miRNA gene microRNA 449a
Tssr121166 13 113037610 to 113037614 4 + TSS region transcription start site region 121166
Gm10735 13 113039301 to 113042243 2942 - protein coding gene predicted gene 10735
Gpx8 13 113042753 to 113046410 3657 - protein coding gene glutathione peroxidase 8 (putative)
2810411K19Rik 13 113044673 to 113045311 638 unclassified gene RIKEN cDNA 2810411K19 gene
Tssr124084 13 113046316 to 113046327 11 - TSS region transcription start site region 124084
Tssr124085 13 113046343 to 113046354 11 - TSS region transcription start site region 124085
Tssr124086 13 113046357 to 113046422 65 - TSS region transcription start site region 124086
Tssr124087 13 113046737 to 113046758 21 - TSS region transcription start site region 124087
Tssr121167 13 113048390 to 113048401 11 + TSS region transcription start site region 121167
Tssr124088 13 113071156 to 113071180 24 - TSS region transcription start site region 124088
Tssr4179 13 113071340 to 113071358 18 + TSS region transcription start site region 4179
Tssr121168 13 113071462 to 113071477 15 + TSS region transcription start site region 121168
4930563N14Rik 13 113078106 to 113079147 1041 - antisense lncRNA gene RIKEN cDNA 4930563N14 gene
Tssr124089 13 113079106 to 113079113 7 - TSS region transcription start site region 124089
Tssr124090 13 113079120 to 113079127 7 - TSS region transcription start site region 124090
Tssr124091 13 113079148 to 113079155 7 - TSS region transcription start site region 124091
Tssr124092 13 113079173 to 113079184 11 - TSS region transcription start site region 124092
Tssr124093 13 113079191 to 113079198 7 - TSS region transcription start site region 124093
Tssr121169 13 113086232 to 113086252 20 + TSS region transcription start site region 121169
Tssr124094 13 113087327 to 113087351 24 - TSS region transcription start site region 124094
Tssr121170 13 113087916 to 113087944 28 + TSS region transcription start site region 121170
Tssr121171 13 113093824 to 113093827 3 + TSS region transcription start site region 121171
Gzma 13 113093827 to 113100981 7154 - protein coding gene granzyme A
Tssr124095 13 113093871 to 113093888 17 - TSS region transcription start site region 124095
Tssr121172 13 113093963 to 113094012 49 + TSS region transcription start site region 121172
Tssr121173 13 113095908 to 113095920 12 + TSS region transcription start site region 121173
Tssr121174 13 113096197 to 113096239 42 + TSS region transcription start site region 121174
Tssr124096 13 113096304 to 113096317 13 - TSS region transcription start site region 124096
Tssr124097 13 113098339 to 113098353 14 - TSS region transcription start site region 124097
Tssr121175 13 113098347 to 113098359 12 + TSS region transcription start site region 121175
Tssr124098 13 113100971 to 113100988 17 - TSS region transcription start site region 124098
Tssr121176 13 113101126 to 113101130 4 + TSS region transcription start site region 121176
Tssr124099 13 113101130 to 113101143 13 - TSS region transcription start site region 124099
Tssr124100 13 113101148 to 113101159 11 - TSS region transcription start site region 124100
Tssr124101 13 113101190 to 113101197 7 - TSS region transcription start site region 124101
Tssr124102 13 113101227 to 113101236 9 - TSS region transcription start site region 124102
Tssr124103 13 113101876 to 113101895 19 - TSS region transcription start site region 124103
Tssr124104 13 113101913 to 113101925 12 - TSS region transcription start site region 124104
Tssr124105 13 113101935 to 113101950 15 - TSS region transcription start site region 124105
Tssr124106 13 113101962 to 113101972 10 - TSS region transcription start site region 124106
Tssr124107 13 113101986 to 113101993 7 - TSS region transcription start site region 124107
Gm9848 13 113108073 to 113108331 258 + pseudogene predicted gene 9848
Tssr124108 13 113110645 to 113110648 3 - TSS region transcription start site region 124108
Tssr124109 13 113136022 to 113136048 26 - TSS region transcription start site region 124109
1700084D21Rik 13 113136083 to 113144012 7929 + lincRNA gene RIKEN cDNA 1700084D21 gene
Tssr121177 13 113136156 to 113136167 11 + TSS region transcription start site region 121177
Tssr121178 13 113139269 to 113139293 24 + TSS region transcription start site region 121178
Gm49564 13 113150677 to 113151450 773 - pseudogene predicted gene, 49564
Tssr124110 13 113155502 to 113155546 44 - TSS region transcription start site region 124110
Gzmk 13 113171874 to 113180897 9023 - protein coding gene granzyme K
Tssr124111 13 113180956 to 113180967 11 - TSS region transcription start site region 124111
Gm41069 13 113188439 to 113225967 37528 - lncRNA gene predicted gene, 41069
Tssr121179 13 113209486 to 113209499 13 + TSS region transcription start site region 121179
Esm1 13 113209659 to 113218098 8439 + protein coding gene endothelial cell-specific molecule 1
Tssr121180 13 113209757 to 113209772 15 + TSS region transcription start site region 121180
Cpgi6108 13 113209886 to 113210155 269 CpG island CpG island 6108
Tssr121181 13 113209944 to 113209959 15 + TSS region transcription start site region 121181
Tssr121182 13 113209966 to 113209980 14 + TSS region transcription start site region 121182
Tssr121183 13 113211321 to 113211325 4 + TSS region transcription start site region 121183
BC067074 13 113292423 to 113370515 78092 + protein coding gene cDNA sequence BC067074
Cpgi6109 13 113292822 to 113293737 915 CpG island CpG island 6109
Tssr121184 13 113293156 to 113293204 48 + TSS region transcription start site region 121184
Tssr121185 13 113293206 to 113293223 17 + TSS region transcription start site region 121185
Gm41070 13 113355672 to 113365091 9419 - lncRNA gene predicted gene, 41070
Gm22385 13 113403088 to 113403188 100 + rRNA gene predicted gene, 22385
Gm41071 13 113420336 to 113423887 3551 - lincRNA gene predicted gene, 41071
4921509O07Rik 13 113446288 to 113502844 56556 - lincRNA gene RIKEN cDNA 4921509O07 gene
Gm31191 13 113479975 to 113480243 268 - pseudogene predicted gene, 31191
Gm47426 13 113488956 to 113489135 179 + pseudogene predicted gene, 47426
Gm34471 13 113507828 to 113538766 30938 - lincRNA gene predicted gene, 34471
Gm34528 13 113523554 to 113527237 3683 - lncRNA gene predicted gene, 34528
Tssr124112 13 113567868 to 113567871 3 - TSS region transcription start site region 124112
Snx18 13 113592179 to 113618564 26385 - protein coding gene sorting nexin 18
Tssr124113 13 113593692 to 113593741 49 - TSS region transcription start site region 124113
Tssr124114 13 113600726 to 113600731 5 - TSS region transcription start site region 124114
Tssr124115 13 113600739 to 113600750 11 - TSS region transcription start site region 124115
Tssr124116 13 113600760 to 113600769 9 - TSS region transcription start site region 124116
Tssr4180 13 113614150 to 113614171 21 + TSS region transcription start site region 4180
Tssr4181 13 113614209 to 113614225 16 + TSS region transcription start site region 4181
Tssr124117 13 113615064 to 113615089 25 - TSS region transcription start site region 124117
Tssr121186 13 113615778 to 113615789 11 + TSS region transcription start site region 121186
Cpgi6110 13 113616798 to 113618792 1994 CpG island CpG island 6110
Tssr124118 13 113617633 to 113617644 11 - TSS region transcription start site region 124118
Tssr124119 13 113618528 to 113618539 11 - TSS region transcription start site region 124119
Tssr124120 13 113618549 to 113618565 16 - TSS region transcription start site region 124120
Tssr121187 13 113660822 to 113660856 34 + TSS region transcription start site region 121187
Hspb3 13 113662896 to 113663676 780 - protein coding gene heat shock protein 3
Cpgi6111 13 113663139 to 113663586 447 CpG island CpG island 6111
Tssr124121 13 113663611 to 113663634 23 - TSS region transcription start site region 124121
Tssr124122 13 113663636 to 113663649 13 - TSS region transcription start site region 124122
Tssr124123 13 113663651 to 113663662 11 - TSS region transcription start site region 124123
Tssr124124 13 113663670 to 113663681 11 - TSS region transcription start site region 124124
Gm34586 13 113672318 to 113686540 14222 + lincRNA gene predicted gene, 34586
D13Mit150 13 113716270 to 113716417 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150
D13Mit150.2 13 113716427 to 113716543 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 150.2
Tssr121188 13 113736004 to 113736028 24 + TSS region transcription start site region 121188
Gm31276 13 113736220 to 113750531 14311 + lncRNA gene predicted gene, 31276
Cpgi6112 13 113761298 to 113761477 179 CpG island CpG island 6112
Gm6343 13 113761386 to 113762128 742 - pseudogene predicted gene 6343
Gm47462 13 113764112 to 113764277 165 + pseudogene predicted gene, 47462
Gm47463 13 113764615 to 113764921 306 + pseudogene predicted gene, 47463
Tssr124125 13 113769894 to 113769900 6 - TSS region transcription start site region 124125
Cpgi6113 13 113777262 to 113777560 298 CpG island CpG island 6113
Gm47464 13 113791552 to 113791777 225 - pseudogene predicted gene, 47464
Cpgi6114 13 113794116 to 113795464 1348 CpG island CpG island 6114
Tssr124126 13 113794405 to 113794410 5 - TSS region transcription start site region 124126
Arl15 13 113794508 to 114157462 362954 + protein coding gene ADP-ribosylation factor-like 15
Tssr121189 13 113794515 to 113794572 57 + TSS region transcription start site region 121189
Tssr121190 13 113794604 to 113794618 14 + TSS region transcription start site region 121190
Tssr121191 13 113794619 to 113794630 11 + TSS region transcription start site region 121191
Tssr121192 13 113794646 to 113794671 25 + TSS region transcription start site region 121192
Tssr121193 13 113818166 to 113818181 15 + TSS region transcription start site region 121193
C130040J23Rik 13 113822424 to 113825724 3300 unclassified gene RIKEN cDNA C130040J23 gene
Cpgi6115 13 113870491 to 113870796 305 CpG island CpG island 6115
Tssr121194 13 113870671 to 113870688 17 + TSS region transcription start site region 121194
Tssr124127 13 113880392 to 113880398 6 - TSS region transcription start site region 124127
Tssr124128 13 113881079 to 113881091 12 - TSS region transcription start site region 124128
Tssr121195 13 113881187 to 113881220 33 + TSS region transcription start site region 121195
6720427H10Rik 13 113972885 to 113976591 3706 unclassified gene RIKEN cDNA 6720427H10 gene
Tssr121196 13 113981481 to 113981495 14 + TSS region transcription start site region 121196
Tssr121197 13 113989750 to 113989753 3 + TSS region transcription start site region 121197
Tssr121198 13 114048487 to 114048492 5 + TSS region transcription start site region 121198
B430203I24Rik 13 114096296 to 114099562 3266 unclassified gene RIKEN cDNA B430203I24 gene
Tssr121199 13 114111174 to 114111176 2 + TSS region transcription start site region 121199
Tssr121200 13 114113564 to 114113568 4 + TSS region transcription start site region 121200
Gm47479 13 114118441 to 114120416 1975 - unclassified gene predicted gene, 47479
A430090L17Rik 13 114124348 to 114151592 27244 - antisense lncRNA gene RIKEN cDNA A430090L17 gene
Tssr124129 13 114149748 to 114149762 14 - TSS region transcription start site region 124129
A230102O21Rik 13 114153222 to 114154258 1036 unclassified gene RIKEN cDNA A230102O21 gene
Tssr124130 13 114156984 to 114157010 26 - TSS region transcription start site region 124130
Gm41072 13 114208989 to 114218138 9149 + lncRNA gene predicted gene, 41072
Gm37907 13 114227111 to 114237432 10321 + unclassified gene predicted gene, 37907
4631422I05Rik 13 114240878 to 114242640 1762 - unclassified gene RIKEN cDNA 4631422I05 gene
Gm47558 13 114281668 to 114284381 2713 - unclassified gene predicted gene, 47558
Ndufs4 13 114287795 to 114388094 100299 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S4
B330018G23Rik 13 114299765 to 114303862 4097 unclassified gene RIKEN cDNA B330018G23 gene
Tssr121201 13 114335072 to 114335076 4 + TSS region transcription start site region 121201