Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112722780-113072380

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
lg 13 110563270 to 112761890 2198620 heritable phenotypic marker lid gap
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Tssr4177 13 112733684 to 112733689 5 + TSS region transcription start site region 4177
Cpgi6099 13 112744388 to 112744559 171 CpG island CpG island 6099
D13Mit293 13 112745437 to 112745556 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 293
Tssr124075 13 112746077 to 112746080 3 - TSS region transcription start site region 124075
Tssr121145 13 112752402 to 112752406 4 + TSS region transcription start site region 121145
Tssr124076 13 112753486 to 112753494 8 - TSS region transcription start site region 124076
Tssr124077 13 112760507 to 112760514 7 - TSS region transcription start site region 124077
D13Mit196 13 112761758 to 112761890 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 196
Mvwf4 13 112761890 to 20293442 -92468448 QTL modifier of von Willebrand factor 4
Tssr124078 13 112762706 to 112762710 4 - TSS region transcription start site region 124078
Tssr121146 13 112763978 to 112763984 6 + TSS region transcription start site region 121146
Gm47850 13 112764848 to 112765616 768 + lincRNA gene predicted gene, 47850
Gm41067 13 112768458 to 112799371 30913 + lncRNA gene predicted gene, 41067
1700125C05Rik 13 112800378 to 112800728 350 unclassified gene RIKEN cDNA 1700125C05 gene
Cpgi6100 13 112800450 to 112801922 1472 CpG island CpG island 6100
Tssr124079 13 112800577 to 112800588 11 - TSS region transcription start site region 124079
Tssr121147 13 112800776 to 112800781 5 + TSS region transcription start site region 121147
Tssr121148 13 112800786 to 112800822 36 + TSS region transcription start site region 121148
Plpp1 13 112800792 to 112867894 67102 + protein coding gene phospholipid phosphatase 1
Tssr4178 13 112800847 to 112800850 3 + TSS region transcription start site region 4178
Tssr121149 13 112800851 to 112800876 25 + TSS region transcription start site region 121149
Tssr121150 13 112800878 to 112800903 25 + TSS region transcription start site region 121150
Tssr121151 13 112800927 to 112800941 14 + TSS region transcription start site region 121151
Tssr121152 13 112800960 to 112800965 5 + TSS region transcription start site region 121152
Tssr121153 13 112801155 to 112801183 28 + TSS region transcription start site region 121153
D13Mit262 13 112814230 to 112814354 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 262
Tssr121154 13 112853231 to 112853252 21 + TSS region transcription start site region 121154
Mtrex 13 112867780 to 112927380 59600 - protein coding gene Mtr4 exosome RNA helicase
Tssr124080 13 112874124 to 112874133 9 - TSS region transcription start site region 124080
Gm26943 13 112884226 to 112885182 956 + pseudogene predicted gene, 26943
Cpgi6101 13 112926949 to 112928101 1152 CpG island CpG island 6101
Tssr124081 13 112927356 to 112927390 34 - TSS region transcription start site region 124081
Tssr124082 13 112927463 to 112927470 7 - TSS region transcription start site region 124082
Tssr124083 13 112927598 to 112927640 42 - TSS region transcription start site region 124083
Tssr121155 13 112927642 to 112927735 93 + TSS region transcription start site region 121155
Dhx29 13 112927793 to 112969187 41394 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 29
Tssr121156 13 112937554 to 112937560 6 + TSS region transcription start site region 121156
Gm8795 13 112937585 to 112938023 438 + pseudogene predicted gene 8795
Cpgi6102 13 112987148 to 112989165 2017 CpG island CpG island 6102
Ccno 13 112987802 to 112990777 2975 + protein coding gene cyclin O
Tssr121157 13 112987822 to 112987838 16 + TSS region transcription start site region 121157
Tssr121158 13 112987952 to 112987977 25 + TSS region transcription start site region 121158
Cpgi6103 13 112989464 to 112990020 556 CpG island CpG island 6103
Cpgi6104 13 112993482 to 112994653 1171 CpG island CpG island 6104
Tssr121159 13 112993793 to 112993820 27 + TSS region transcription start site region 121159
Tssr121160 13 112993822 to 112993838 16 + TSS region transcription start site region 121160
Tssr121161 13 112993840 to 112993869 29 + TSS region transcription start site region 121161
Mcidas 13 112993845 to 113000394 6549 + protein coding gene multiciliate differentiation and DNA synthesis associated cell cycle protein
Tssr121162 13 112993884 to 112993895 11 + TSS region transcription start site region 121162
6330437I11Rik 13 112997785 to 112999248 1463 unclassified non-coding RNA gene RIKEN cDNA 6330437I11 gene
Cpgi6105 13 112998363 to 112999183 820 CpG island CpG island 6105
Cpgi6106 13 113031745 to 113032556 811 CpG island CpG island 6106
Tssr121163 13 113032197 to 113032201 4 + TSS region transcription start site region 121163
Tssr121164 13 113033039 to 113033054 15 + TSS region transcription start site region 121164
Cpgi6107 13 113034896 to 113035526 630 CpG island CpG island 6107
Cdc20b 13 113035111 to 113091195 56084 + protein coding gene cell division cycle 20B
Tssr121165 13 113035227 to 113035231 4 + TSS region transcription start site region 121165
Mirc34 13 113035983 to 113037624 1641 complex/cluster/region microRNA cluster 34, including Mir449a through Mir449c
Mir449c 13 113035983 to 113036091 108 + miRNA gene microRNA 449c
Mir449b 13 113037419 to 113037498 79 + miRNA gene microRNA 449b
Mir449a 13 113037534 to 113037624 90 + miRNA gene microRNA 449a
Tssr121166 13 113037610 to 113037614 4 + TSS region transcription start site region 121166
Gm10735 13 113039301 to 113042243 2942 - protein coding gene predicted gene 10735
Gpx8 13 113042753 to 113046410 3657 - protein coding gene glutathione peroxidase 8 (putative)
2810411K19Rik 13 113044673 to 113045311 638 unclassified gene RIKEN cDNA 2810411K19 gene
Tssr124084 13 113046316 to 113046327 11 - TSS region transcription start site region 124084
Tssr124085 13 113046343 to 113046354 11 - TSS region transcription start site region 124085
Tssr124086 13 113046357 to 113046422 65 - TSS region transcription start site region 124086
Tssr124087 13 113046737 to 113046758 21 - TSS region transcription start site region 124087
Tssr121167 13 113048390 to 113048401 11 + TSS region transcription start site region 121167
Tssr124088 13 113071156 to 113071180 24 - TSS region transcription start site region 124088
Tssr4179 13 113071340 to 113071358 18 + TSS region transcription start site region 4179
Tssr121168 13 113071462 to 113071477 15 + TSS region transcription start site region 121168