Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112597554-113277560

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
lg 13 110563270 to 112761890 2198620 heritable phenotypic marker lid gap
Ddx4 13 112598333 to 112652475 54142 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Tssr124065 13 112601799 to 112601819 20 - TSS region transcription start site region 124065
Tssr124066 13 112620676 to 112620683 7 - TSS region transcription start site region 124066
Tssr124067 13 112620712 to 112620720 8 - TSS region transcription start site region 124067
Tssr124068 13 112620737 to 112620746 9 - TSS region transcription start site region 124068
Tssr121139 13 112639465 to 112639477 12 + TSS region transcription start site region 121139
Tssr124069 13 112651417 to 112651421 4 - TSS region transcription start site region 124069
Cpgi6097 13 112651833 to 112652608 775 CpG island CpG island 6097
Tssr124070 13 112652241 to 112652255 14 - TSS region transcription start site region 124070
Tssr124071 13 112652269 to 112652276 7 - TSS region transcription start site region 124071
Tssr124072 13 112652295 to 112652355 60 - TSS region transcription start site region 124072
Tssr124073 13 112652357 to 112652370 13 - TSS region transcription start site region 124073
Cpgi6098 13 112660590 to 112661086 496 CpG island CpG island 6098
Tssr121140 13 112660671 to 112660682 11 + TSS region transcription start site region 121140
Tssr121141 13 112660739 to 112660795 56 + TSS region transcription start site region 121141
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Gm47827 13 112669139 to 112685696 16557 - antisense lncRNA gene predicted gene, 47827
Tssr124074 13 112673249 to 112673264 15 - TSS region transcription start site region 124074
Tssr121142 13 112673365 to 112673374 9 + TSS region transcription start site region 121142
Tssr121143 13 112673382 to 112673416 34 + TSS region transcription start site region 121143
Tssr121144 13 112673426 to 112673433 7 + TSS region transcription start site region 121144
D13Mit261 13 112682534 to 112682655 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 261
Gm18883 13 112699679 to 112700036 357 + pseudogene predicted gene, 18883
Tssr4177 13 112733684 to 112733689 5 + TSS region transcription start site region 4177
Cpgi6099 13 112744388 to 112744559 171 CpG island CpG island 6099
D13Mit293 13 112745437 to 112745556 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 293
Tssr124075 13 112746077 to 112746080 3 - TSS region transcription start site region 124075
Tssr121145 13 112752402 to 112752406 4 + TSS region transcription start site region 121145
Tssr124076 13 112753486 to 112753494 8 - TSS region transcription start site region 124076
Tssr124077 13 112760507 to 112760514 7 - TSS region transcription start site region 124077
D13Mit196 13 112761758 to 112761890 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 196
Mvwf4 13 112761890 to 20293442 -92468448 QTL modifier of von Willebrand factor 4
Tssr124078 13 112762706 to 112762710 4 - TSS region transcription start site region 124078
Tssr121146 13 112763978 to 112763984 6 + TSS region transcription start site region 121146
Gm47850 13 112764848 to 112765616 768 + lincRNA gene predicted gene, 47850
Gm41067 13 112768458 to 112799371 30913 + lncRNA gene predicted gene, 41067
1700125C05Rik 13 112800378 to 112800728 350 unclassified gene RIKEN cDNA 1700125C05 gene
Cpgi6100 13 112800450 to 112801922 1472 CpG island CpG island 6100
Tssr124079 13 112800577 to 112800588 11 - TSS region transcription start site region 124079
Tssr121147 13 112800776 to 112800781 5 + TSS region transcription start site region 121147
Tssr121148 13 112800786 to 112800822 36 + TSS region transcription start site region 121148
Plpp1 13 112800792 to 112867894 67102 + protein coding gene phospholipid phosphatase 1
Tssr4178 13 112800847 to 112800850 3 + TSS region transcription start site region 4178
Tssr121149 13 112800851 to 112800876 25 + TSS region transcription start site region 121149
Tssr121150 13 112800878 to 112800903 25 + TSS region transcription start site region 121150
Tssr121151 13 112800927 to 112800941 14 + TSS region transcription start site region 121151
Tssr121152 13 112800960 to 112800965 5 + TSS region transcription start site region 121152
Tssr121153 13 112801155 to 112801183 28 + TSS region transcription start site region 121153
D13Mit262 13 112814230 to 112814354 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 262
Tssr121154 13 112853231 to 112853252 21 + TSS region transcription start site region 121154
Mtrex 13 112867780 to 112927380 59600 - protein coding gene Mtr4 exosome RNA helicase
Tssr124080 13 112874124 to 112874133 9 - TSS region transcription start site region 124080
Gm26943 13 112884226 to 112885182 956 + pseudogene predicted gene, 26943
Cpgi6101 13 112926949 to 112928101 1152 CpG island CpG island 6101
Tssr124081 13 112927356 to 112927390 34 - TSS region transcription start site region 124081
Tssr124082 13 112927463 to 112927470 7 - TSS region transcription start site region 124082
Tssr124083 13 112927598 to 112927640 42 - TSS region transcription start site region 124083
Tssr121155 13 112927642 to 112927735 93 + TSS region transcription start site region 121155
Dhx29 13 112927793 to 112969187 41394 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 29
Tssr121156 13 112937554 to 112937560 6 + TSS region transcription start site region 121156
Gm8795 13 112937585 to 112938023 438 + pseudogene predicted gene 8795
Cpgi6102 13 112987148 to 112989165 2017 CpG island CpG island 6102
Ccno 13 112987802 to 112990777 2975 + protein coding gene cyclin O
Tssr121157 13 112987822 to 112987838 16 + TSS region transcription start site region 121157
Tssr121158 13 112987952 to 112987977 25 + TSS region transcription start site region 121158
Cpgi6103 13 112989464 to 112990020 556 CpG island CpG island 6103
Cpgi6104 13 112993482 to 112994653 1171 CpG island CpG island 6104
Tssr121159 13 112993793 to 112993820 27 + TSS region transcription start site region 121159
Tssr121160 13 112993822 to 112993838 16 + TSS region transcription start site region 121160
Tssr121161 13 112993840 to 112993869 29 + TSS region transcription start site region 121161
Mcidas 13 112993845 to 113000394 6549 + protein coding gene multiciliate differentiation and DNA synthesis associated cell cycle protein
Tssr121162 13 112993884 to 112993895 11 + TSS region transcription start site region 121162
6330437I11Rik 13 112997785 to 112999248 1463 unclassified non-coding RNA gene RIKEN cDNA 6330437I11 gene
Cpgi6105 13 112998363 to 112999183 820 CpG island CpG island 6105
Cpgi6106 13 113031745 to 113032556 811 CpG island CpG island 6106
Tssr121163 13 113032197 to 113032201 4 + TSS region transcription start site region 121163
Tssr121164 13 113033039 to 113033054 15 + TSS region transcription start site region 121164
Cpgi6107 13 113034896 to 113035526 630 CpG island CpG island 6107
Cdc20b 13 113035111 to 113091195 56084 + protein coding gene cell division cycle 20B
Tssr121165 13 113035227 to 113035231 4 + TSS region transcription start site region 121165
Mirc34 13 113035983 to 113037624 1641 complex/cluster/region microRNA cluster 34, including Mir449a through Mir449c
Mir449c 13 113035983 to 113036091 108 + miRNA gene microRNA 449c
Mir449b 13 113037419 to 113037498 79 + miRNA gene microRNA 449b
Mir449a 13 113037534 to 113037624 90 + miRNA gene microRNA 449a
Tssr121166 13 113037610 to 113037614 4 + TSS region transcription start site region 121166
Gm10735 13 113039301 to 113042243 2942 - protein coding gene predicted gene 10735
Gpx8 13 113042753 to 113046410 3657 - protein coding gene glutathione peroxidase 8 (putative)
2810411K19Rik 13 113044673 to 113045311 638 unclassified gene RIKEN cDNA 2810411K19 gene
Tssr124084 13 113046316 to 113046327 11 - TSS region transcription start site region 124084
Tssr124085 13 113046343 to 113046354 11 - TSS region transcription start site region 124085
Tssr124086 13 113046357 to 113046422 65 - TSS region transcription start site region 124086
Tssr124087 13 113046737 to 113046758 21 - TSS region transcription start site region 124087
Tssr121167 13 113048390 to 113048401 11 + TSS region transcription start site region 121167
Tssr124088 13 113071156 to 113071180 24 - TSS region transcription start site region 124088
Tssr4179 13 113071340 to 113071358 18 + TSS region transcription start site region 4179
Tssr121168 13 113071462 to 113071477 15 + TSS region transcription start site region 121168
4930563N14Rik 13 113078106 to 113079147 1041 - antisense lncRNA gene RIKEN cDNA 4930563N14 gene
Tssr124089 13 113079106 to 113079113 7 - TSS region transcription start site region 124089
Tssr124090 13 113079120 to 113079127 7 - TSS region transcription start site region 124090
Tssr124091 13 113079148 to 113079155 7 - TSS region transcription start site region 124091
Tssr124092 13 113079173 to 113079184 11 - TSS region transcription start site region 124092
Tssr124093 13 113079191 to 113079198 7 - TSS region transcription start site region 124093
Tssr121169 13 113086232 to 113086252 20 + TSS region transcription start site region 121169
Tssr124094 13 113087327 to 113087351 24 - TSS region transcription start site region 124094
Tssr121170 13 113087916 to 113087944 28 + TSS region transcription start site region 121170
Tssr121171 13 113093824 to 113093827 3 + TSS region transcription start site region 121171
Gzma 13 113093827 to 113100981 7154 - protein coding gene granzyme A
Tssr124095 13 113093871 to 113093888 17 - TSS region transcription start site region 124095
Tssr121172 13 113093963 to 113094012 49 + TSS region transcription start site region 121172
Tssr121173 13 113095908 to 113095920 12 + TSS region transcription start site region 121173
Tssr121174 13 113096197 to 113096239 42 + TSS region transcription start site region 121174
Tssr124096 13 113096304 to 113096317 13 - TSS region transcription start site region 124096
Tssr124097 13 113098339 to 113098353 14 - TSS region transcription start site region 124097
Tssr121175 13 113098347 to 113098359 12 + TSS region transcription start site region 121175
Tssr124098 13 113100971 to 113100988 17 - TSS region transcription start site region 124098
Tssr121176 13 113101126 to 113101130 4 + TSS region transcription start site region 121176
Tssr124099 13 113101130 to 113101143 13 - TSS region transcription start site region 124099
Tssr124100 13 113101148 to 113101159 11 - TSS region transcription start site region 124100
Tssr124101 13 113101190 to 113101197 7 - TSS region transcription start site region 124101
Tssr124102 13 113101227 to 113101236 9 - TSS region transcription start site region 124102
Tssr124103 13 113101876 to 113101895 19 - TSS region transcription start site region 124103
Tssr124104 13 113101913 to 113101925 12 - TSS region transcription start site region 124104
Tssr124105 13 113101935 to 113101950 15 - TSS region transcription start site region 124105
Tssr124106 13 113101962 to 113101972 10 - TSS region transcription start site region 124106
Tssr124107 13 113101986 to 113101993 7 - TSS region transcription start site region 124107
Gm9848 13 113108073 to 113108331 258 + pseudogene predicted gene 9848
Tssr124108 13 113110645 to 113110648 3 - TSS region transcription start site region 124108
Tssr124109 13 113136022 to 113136048 26 - TSS region transcription start site region 124109
1700084D21Rik 13 113136083 to 113144012 7929 + lincRNA gene RIKEN cDNA 1700084D21 gene
Tssr121177 13 113136156 to 113136167 11 + TSS region transcription start site region 121177
Tssr121178 13 113139269 to 113139293 24 + TSS region transcription start site region 121178
Gm49564 13 113150677 to 113151450 773 - pseudogene predicted gene, 49564
Tssr124110 13 113155502 to 113155546 44 - TSS region transcription start site region 124110
Gzmk 13 113171874 to 113180897 9023 - protein coding gene granzyme K
Tssr124111 13 113180956 to 113180967 11 - TSS region transcription start site region 124111
Gm41069 13 113188439 to 113225967 37528 - lncRNA gene predicted gene, 41069
Tssr121179 13 113209486 to 113209499 13 + TSS region transcription start site region 121179
Esm1 13 113209659 to 113218098 8439 + protein coding gene endothelial cell-specific molecule 1
Tssr121180 13 113209757 to 113209772 15 + TSS region transcription start site region 121180
Cpgi6108 13 113209886 to 113210155 269 CpG island CpG island 6108
Tssr121181 13 113209944 to 113209959 15 + TSS region transcription start site region 121181
Tssr121182 13 113209966 to 113209980 14 + TSS region transcription start site region 121182
Tssr121183 13 113211321 to 113211325 4 + TSS region transcription start site region 121183