Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112344001-112674017

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121107 13 112344739 to 112344745 6 + TSS region transcription start site region 121107
Tssr124047 13 112349221 to 112349246 25 - TSS region transcription start site region 124047
Gm41065 13 112351554 to 112355805 4251 - lncRNA gene predicted gene, 41065
Tssr124048 13 112354222 to 112354227 5 - TSS region transcription start site region 124048
Tssr124049 13 112354249 to 112354271 22 - TSS region transcription start site region 124049
Gm48837 13 112356925 to 112367845 10920 - antisense lncRNA gene predicted gene, 48837
Tssr121108 13 112363417 to 112363436 19 + TSS region transcription start site region 121108
Tssr121109 13 112363446 to 112363468 22 + TSS region transcription start site region 121109
Rplag 13 112365596 to 112365710 114 QTL reduced platelet aggregation
D13Mit260 13 112365596 to 112365710 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 260
Tssr121110 13 112366144 to 112366147 3 + TSS region transcription start site region 121110
Tssr121111 13 112367874 to 112367879 5 + TSS region transcription start site region 121111
Tssr121112 13 112367881 to 112367909 28 + TSS region transcription start site region 121112
Tssr121113 13 112373369 to 112373407 38 + TSS region transcription start site region 121113
D13Mit228 13 112388088 to 112388235 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 228
Gm33905 13 112411142 to 112423037 11895 + lncRNA gene predicted gene, 33905
2810403G07Rik 13 112414938 to 112417365 2427 - lincRNA gene RIKEN cDNA 2810403G07 gene
Tssr121114 13 112418142 to 112418184 42 + TSS region transcription start site region 121114
Gm48876 13 112424222 to 112426340 2118 - lincRNA gene predicted gene, 48876
Tssr124050 13 112424712 to 112424724 12 - TSS region transcription start site region 124050
Tssr121115 13 112427746 to 112427755 9 + TSS region transcription start site region 121115
Tssr121116 13 112427771 to 112427782 11 + TSS region transcription start site region 121116
Gm48879 13 112429434 to 112436596 7162 - lincRNA gene predicted gene, 48879
Tssr124051 13 112438039 to 112438062 23 - TSS region transcription start site region 124051
Tssr121117 13 112438148 to 112438178 30 + TSS region transcription start site region 121117
Tssr121118 13 112438227 to 112438232 5 + TSS region transcription start site region 121118
Tssr124052 13 112439987 to 112440001 14 - TSS region transcription start site region 124052
Tssr124053 13 112447258 to 112447290 32 - TSS region transcription start site region 124053
Tssr124054 13 112447323 to 112447332 9 - TSS region transcription start site region 124054
6720470G18Rik 13 112463095 to 112463976 881 unclassified gene RIKEN cDNA 6720470G18 gene
Tssr121119 13 112463599 to 112463638 39 + TSS region transcription start site region 121119
Cpgi6096 13 112463603 to 112464686 1083 CpG island CpG island 6096
Tssr124055 13 112463867 to 112463878 11 - TSS region transcription start site region 124055
Tssr124056 13 112463889 to 112463905 16 - TSS region transcription start site region 124056
Tssr124057 13 112463916 to 112463966 50 - TSS region transcription start site region 124057
Il6st 13 112464070 to 112506860 42790 + protein coding gene interleukin 6 signal transducer
Tssr121120 13 112464084 to 112464162 78 + TSS region transcription start site region 121120
Tssr121121 13 112464521 to 112464529 8 + TSS region transcription start site region 121121
Tssr121122 13 112465841 to 112465849 8 + TSS region transcription start site region 121122
Tssr121123 13 112466862 to 112466880 18 + TSS region transcription start site region 121123
Tssr121124 13 112467468 to 112467475 7 + TSS region transcription start site region 121124
Tssr121125 13 112467504 to 112467521 17 + TSS region transcription start site region 121125
Tssr121126 13 112474811 to 112474818 7 + TSS region transcription start site region 121126
Tssr121127 13 112480034 to 112480061 27 + TSS region transcription start site region 121127
Tssr121128 13 112480071 to 112480097 26 + TSS region transcription start site region 121128
Tssr121129 13 112481463 to 112481476 13 + TSS region transcription start site region 121129
Tssr121130 13 112482159 to 112482191 32 + TSS region transcription start site region 121130
Tssr121131 13 112488573 to 112488610 37 + TSS region transcription start site region 121131
Tssr121132 13 112489975 to 112489983 8 + TSS region transcription start site region 121132
Tssr121133 13 112495238 to 112495260 22 + TSS region transcription start site region 121133
Tssr121134 13 112504096 to 112504109 13 + TSS region transcription start site region 121134
Tssr121135 13 112507366 to 112507391 25 + TSS region transcription start site region 121135
Tssr121136 13 112508190 to 112508204 14 + TSS region transcription start site region 121136
Tssr121137 13 112509001 to 112509017 16 + TSS region transcription start site region 121137
Tssr121138 13 112509072 to 112509111 39 + TSS region transcription start site region 121138
Il31ra 13 112521849 to 112580732 58883 - protein coding gene interleukin 31 receptor A
Tssr124058 13 112552102 to 112552117 15 - TSS region transcription start site region 124058
Tssr124059 13 112552118 to 112552132 14 - TSS region transcription start site region 124059
Tssr124060 13 112562029 to 112562037 8 - TSS region transcription start site region 124060
Tssr124061 13 112578308 to 112578355 47 - TSS region transcription start site region 124061
Tssr124062 13 112580711 to 112580728 17 - TSS region transcription start site region 124062
Tssr124063 13 112591240 to 112591287 47 - TSS region transcription start site region 124063
Gm3226 13 112593743 to 112595084 1341 - pseudogene predicted gene 3226
Tssr124064 13 112595185 to 112595186 1 - TSS region transcription start site region 124064
Ddx4 13 112598333 to 112652475 54142 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Tssr124065 13 112601799 to 112601819 20 - TSS region transcription start site region 124065
Tssr124066 13 112620676 to 112620683 7 - TSS region transcription start site region 124066
Tssr124067 13 112620712 to 112620720 8 - TSS region transcription start site region 124067
Tssr124068 13 112620737 to 112620746 9 - TSS region transcription start site region 124068
Tssr121139 13 112639465 to 112639477 12 + TSS region transcription start site region 121139
Tssr124069 13 112651417 to 112651421 4 - TSS region transcription start site region 124069
Cpgi6097 13 112651833 to 112652608 775 CpG island CpG island 6097
Tssr124070 13 112652241 to 112652255 14 - TSS region transcription start site region 124070
Tssr124071 13 112652269 to 112652276 7 - TSS region transcription start site region 124071
Tssr124072 13 112652295 to 112652355 60 - TSS region transcription start site region 124072
Tssr124073 13 112652357 to 112652370 13 - TSS region transcription start site region 124073
Cpgi6098 13 112660590 to 112661086 496 CpG island CpG island 6098
Tssr121140 13 112660671 to 112660682 11 + TSS region transcription start site region 121140
Tssr121141 13 112660739 to 112660795 56 + TSS region transcription start site region 121141
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Gm47827 13 112669139 to 112685696 16557 - antisense lncRNA gene predicted gene, 47827
Tssr124074 13 112673249 to 112673264 15 - TSS region transcription start site region 124074
Tssr121142 13 112673365 to 112673374 9 + TSS region transcription start site region 121142
Tssr121143 13 112673382 to 112673416 34 + TSS region transcription start site region 121143
Tssr121144 13 112673426 to 112673433 7 + TSS region transcription start site region 121144