Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112188451-112484002

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33849 13 112186176 to 112191342 5166 + lncRNA gene predicted gene, 33849
Tssr121097 13 112188753 to 112188758 5 + TSS region transcription start site region 121097
Cpgi6095 13 112213677 to 112213960 283 CpG island CpG island 6095
Gm37427 13 112219193 to 112220481 1288 + unclassified gene predicted gene, 37427
Tssr121098 13 112263049 to 112263050 1 + TSS region transcription start site region 121098
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121099 13 112288496 to 112288507 11 + TSS region transcription start site region 121099
Tssr121100 13 112288516 to 112288548 32 + TSS region transcription start site region 121100
Tssr121101 13 112288580 to 112288594 14 + TSS region transcription start site region 121101
Tssr121102 13 112288790 to 112288806 16 + TSS region transcription start site region 121102
Tssr124046 13 112289148 to 112289152 4 - TSS region transcription start site region 124046
Gm22768 13 112291121 to 112291273 152 + snRNA gene predicted gene, 22768
D13Mit53 13 112294423 to 112294569 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 53
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4
Tssr121103 13 112318389 to 112318405 16 + TSS region transcription start site region 121103
Tssr121104 13 112318416 to 112318437 21 + TSS region transcription start site region 121104
Tssr121105 13 112318447 to 112318458 11 + TSS region transcription start site region 121105
Tssr121106 13 112335929 to 112335942 13 + TSS region transcription start site region 121106
Tssr121107 13 112344739 to 112344745 6 + TSS region transcription start site region 121107
Tssr124047 13 112349221 to 112349246 25 - TSS region transcription start site region 124047
Gm41065 13 112351554 to 112355805 4251 - lncRNA gene predicted gene, 41065
Tssr124048 13 112354222 to 112354227 5 - TSS region transcription start site region 124048
Tssr124049 13 112354249 to 112354271 22 - TSS region transcription start site region 124049
Gm48837 13 112356925 to 112367845 10920 - antisense lncRNA gene predicted gene, 48837
Tssr121108 13 112363417 to 112363436 19 + TSS region transcription start site region 121108
Tssr121109 13 112363446 to 112363468 22 + TSS region transcription start site region 121109
D13Mit260 13 112365596 to 112365710 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 260
Rplag 13 112365596 to 112365710 114 QTL reduced platelet aggregation
Tssr121110 13 112366144 to 112366147 3 + TSS region transcription start site region 121110
Tssr121111 13 112367874 to 112367879 5 + TSS region transcription start site region 121111
Tssr121112 13 112367881 to 112367909 28 + TSS region transcription start site region 121112
Tssr121113 13 112373369 to 112373407 38 + TSS region transcription start site region 121113
D13Mit228 13 112388088 to 112388235 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 228
Gm33905 13 112411142 to 112423037 11895 + lncRNA gene predicted gene, 33905
2810403G07Rik 13 112414938 to 112417365 2427 - lincRNA gene RIKEN cDNA 2810403G07 gene
Tssr121114 13 112418142 to 112418184 42 + TSS region transcription start site region 121114
Gm48876 13 112424222 to 112426340 2118 - lincRNA gene predicted gene, 48876
Tssr124050 13 112424712 to 112424724 12 - TSS region transcription start site region 124050
Tssr121115 13 112427746 to 112427755 9 + TSS region transcription start site region 121115
Tssr121116 13 112427771 to 112427782 11 + TSS region transcription start site region 121116
Gm48879 13 112429434 to 112436596 7162 - lincRNA gene predicted gene, 48879
Tssr124051 13 112438039 to 112438062 23 - TSS region transcription start site region 124051
Tssr121117 13 112438148 to 112438178 30 + TSS region transcription start site region 121117
Tssr121118 13 112438227 to 112438232 5 + TSS region transcription start site region 121118
Tssr124052 13 112439987 to 112440001 14 - TSS region transcription start site region 124052
Tssr124053 13 112447258 to 112447290 32 - TSS region transcription start site region 124053
Tssr124054 13 112447323 to 112447332 9 - TSS region transcription start site region 124054
6720470G18Rik 13 112463095 to 112463976 881 unclassified gene RIKEN cDNA 6720470G18 gene
Tssr121119 13 112463599 to 112463638 39 + TSS region transcription start site region 121119
Cpgi6096 13 112463603 to 112464686 1083 CpG island CpG island 6096
Tssr124055 13 112463867 to 112463878 11 - TSS region transcription start site region 124055
Tssr124056 13 112463889 to 112463905 16 - TSS region transcription start site region 124056
Tssr124057 13 112463916 to 112463966 50 - TSS region transcription start site region 124057
Il6st 13 112464070 to 112506860 42790 + protein coding gene interleukin 6 signal transducer
Tssr121120 13 112464084 to 112464162 78 + TSS region transcription start site region 121120
Tssr121121 13 112464521 to 112464529 8 + TSS region transcription start site region 121121
Tssr121122 13 112465841 to 112465849 8 + TSS region transcription start site region 121122
Tssr121123 13 112466862 to 112466880 18 + TSS region transcription start site region 121123
Tssr121124 13 112467468 to 112467475 7 + TSS region transcription start site region 121124
Tssr121125 13 112467504 to 112467521 17 + TSS region transcription start site region 121125
Tssr121126 13 112474811 to 112474818 7 + TSS region transcription start site region 121126
Tssr121127 13 112480034 to 112480061 27 + TSS region transcription start site region 121127
Tssr121128 13 112480071 to 112480097 26 + TSS region transcription start site region 121128
Tssr121129 13 112481463 to 112481476 13 + TSS region transcription start site region 121129
Tssr121130 13 112482159 to 112482191 32 + TSS region transcription start site region 121130