Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:111978308-113178355

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244 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
lg 13 110563270 to 112761890 2198620 heritable phenotypic marker lid gap
Tssr121088 13 111980626 to 111980655 29 + TSS region transcription start site region 121088
Tssr121089 13 111983026 to 111983059 33 + TSS region transcription start site region 121089
Tssr124042 13 111984049 to 111984060 11 - TSS region transcription start site region 124042
Tssr121090 13 111984278 to 111984288 10 + TSS region transcription start site region 121090
Gm15322 13 111991466 to 111995486 4020 + lincRNA gene predicted gene 15322
Tssr121091 13 112000031 to 112000043 12 + TSS region transcription start site region 121091
Gm15323 13 112001009 to 112012238 11229 + lincRNA gene predicted gene 15323
Tssr124043 13 112001187 to 112001195 8 - TSS region transcription start site region 124043
Tssr124044 13 112001240 to 112001252 12 - TSS region transcription start site region 124044
Tssr121092 13 112001415 to 112001426 11 + TSS region transcription start site region 121092
Tssr121093 13 112001434 to 112001443 9 + TSS region transcription start site region 121093
Tssr121094 13 112001901 to 112001924 23 + TSS region transcription start site region 121094
Gm41061 13 112038313 to 112041558 3245 - lncRNA gene predicted gene, 41061
Gm41062 13 112100504 to 112101699 1195 + lncRNA gene predicted gene, 41062
Cpgi6094 13 112100709 to 112101118 409 CpG island CpG island 6094
Tssr121095 13 112100916 to 112100944 28 + TSS region transcription start site region 121095
Gm31104 13 112138116 to 112139093 977 + pseudogene predicted gene, 31104
Gm48802 13 112165458 to 112172068 6610 - lincRNA gene predicted gene, 48802
Tssr124045 13 112172162 to 112172206 44 - TSS region transcription start site region 124045
Gm41063 13 112182285 to 112186031 3746 + lncRNA gene predicted gene, 41063
Tssr121096 13 112182503 to 112182517 14 + TSS region transcription start site region 121096
Gm33849 13 112186176 to 112191342 5166 + lncRNA gene predicted gene, 33849
Tssr121097 13 112188753 to 112188758 5 + TSS region transcription start site region 121097
Cpgi6095 13 112213677 to 112213960 283 CpG island CpG island 6095
Gm37427 13 112219193 to 112220481 1288 + unclassified gene predicted gene, 37427
Tssr121098 13 112263049 to 112263050 1 + TSS region transcription start site region 121098
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121099 13 112288496 to 112288507 11 + TSS region transcription start site region 121099
Tssr121100 13 112288516 to 112288548 32 + TSS region transcription start site region 121100
Tssr121101 13 112288580 to 112288594 14 + TSS region transcription start site region 121101
Tssr121102 13 112288790 to 112288806 16 + TSS region transcription start site region 121102
Tssr124046 13 112289148 to 112289152 4 - TSS region transcription start site region 124046
Gm22768 13 112291121 to 112291273 152 + snRNA gene predicted gene, 22768
D13Mit53 13 112294423 to 112294569 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 53
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
Tssr121103 13 112318389 to 112318405 16 + TSS region transcription start site region 121103
Tssr121104 13 112318416 to 112318437 21 + TSS region transcription start site region 121104
Tssr121105 13 112318447 to 112318458 11 + TSS region transcription start site region 121105
Tssr121106 13 112335929 to 112335942 13 + TSS region transcription start site region 121106
Tssr121107 13 112344739 to 112344745 6 + TSS region transcription start site region 121107
Tssr124047 13 112349221 to 112349246 25 - TSS region transcription start site region 124047
Gm41065 13 112351554 to 112355805 4251 - lncRNA gene predicted gene, 41065
Tssr124048 13 112354222 to 112354227 5 - TSS region transcription start site region 124048
Tssr124049 13 112354249 to 112354271 22 - TSS region transcription start site region 124049
Gm48837 13 112356925 to 112367845 10920 - antisense lncRNA gene predicted gene, 48837
Tssr121108 13 112363417 to 112363436 19 + TSS region transcription start site region 121108
Tssr121109 13 112363446 to 112363468 22 + TSS region transcription start site region 121109
D13Mit260 13 112365596 to 112365710 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 260
Rplag 13 112365596 to 112365710 114 QTL reduced platelet aggregation
Tssr121110 13 112366144 to 112366147 3 + TSS region transcription start site region 121110
Tssr121111 13 112367874 to 112367879 5 + TSS region transcription start site region 121111
Tssr121112 13 112367881 to 112367909 28 + TSS region transcription start site region 121112
Tssr121113 13 112373369 to 112373407 38 + TSS region transcription start site region 121113
D13Mit228 13 112388088 to 112388235 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 228
Gm33905 13 112411142 to 112423037 11895 + lncRNA gene predicted gene, 33905
2810403G07Rik 13 112414938 to 112417365 2427 - lincRNA gene RIKEN cDNA 2810403G07 gene
Tssr121114 13 112418142 to 112418184 42 + TSS region transcription start site region 121114
Gm48876 13 112424222 to 112426340 2118 - lincRNA gene predicted gene, 48876
Tssr124050 13 112424712 to 112424724 12 - TSS region transcription start site region 124050
Tssr121115 13 112427746 to 112427755 9 + TSS region transcription start site region 121115
Tssr121116 13 112427771 to 112427782 11 + TSS region transcription start site region 121116
Gm48879 13 112429434 to 112436596 7162 - lincRNA gene predicted gene, 48879
Tssr124051 13 112438039 to 112438062 23 - TSS region transcription start site region 124051
Tssr121117 13 112438148 to 112438178 30 + TSS region transcription start site region 121117
Tssr121118 13 112438227 to 112438232 5 + TSS region transcription start site region 121118
Tssr124052 13 112439987 to 112440001 14 - TSS region transcription start site region 124052
Tssr124053 13 112447258 to 112447290 32 - TSS region transcription start site region 124053
Tssr124054 13 112447323 to 112447332 9 - TSS region transcription start site region 124054
6720470G18Rik 13 112463095 to 112463976 881 unclassified gene RIKEN cDNA 6720470G18 gene
Tssr121119 13 112463599 to 112463638 39 + TSS region transcription start site region 121119
Cpgi6096 13 112463603 to 112464686 1083 CpG island CpG island 6096
Tssr124055 13 112463867 to 112463878 11 - TSS region transcription start site region 124055
Tssr124056 13 112463889 to 112463905 16 - TSS region transcription start site region 124056
Tssr124057 13 112463916 to 112463966 50 - TSS region transcription start site region 124057
Il6st 13 112464070 to 112506860 42790 + protein coding gene interleukin 6 signal transducer
Tssr121120 13 112464084 to 112464162 78 + TSS region transcription start site region 121120
Tssr121121 13 112464521 to 112464529 8 + TSS region transcription start site region 121121
Tssr121122 13 112465841 to 112465849 8 + TSS region transcription start site region 121122
Tssr121123 13 112466862 to 112466880 18 + TSS region transcription start site region 121123
Tssr121124 13 112467468 to 112467475 7 + TSS region transcription start site region 121124
Tssr121125 13 112467504 to 112467521 17 + TSS region transcription start site region 121125
Tssr121126 13 112474811 to 112474818 7 + TSS region transcription start site region 121126
Tssr121127 13 112480034 to 112480061 27 + TSS region transcription start site region 121127
Tssr121128 13 112480071 to 112480097 26 + TSS region transcription start site region 121128
Tssr121129 13 112481463 to 112481476 13 + TSS region transcription start site region 121129
Tssr121130 13 112482159 to 112482191 32 + TSS region transcription start site region 121130
Tssr121131 13 112488573 to 112488610 37 + TSS region transcription start site region 121131
Tssr121132 13 112489975 to 112489983 8 + TSS region transcription start site region 121132
Tssr121133 13 112495238 to 112495260 22 + TSS region transcription start site region 121133
Tssr121134 13 112504096 to 112504109 13 + TSS region transcription start site region 121134
Tssr121135 13 112507366 to 112507391 25 + TSS region transcription start site region 121135
Tssr121136 13 112508190 to 112508204 14 + TSS region transcription start site region 121136
Tssr121137 13 112509001 to 112509017 16 + TSS region transcription start site region 121137
Tssr121138 13 112509072 to 112509111 39 + TSS region transcription start site region 121138
Il31ra 13 112521849 to 112580732 58883 - protein coding gene interleukin 31 receptor A
Tssr124058 13 112552102 to 112552117 15 - TSS region transcription start site region 124058
Tssr124059 13 112552118 to 112552132 14 - TSS region transcription start site region 124059
Tssr124060 13 112562029 to 112562037 8 - TSS region transcription start site region 124060
Tssr124061 13 112578308 to 112578355 47 - TSS region transcription start site region 124061
Tssr124062 13 112580711 to 112580728 17 - TSS region transcription start site region 124062
Tssr124063 13 112591240 to 112591287 47 - TSS region transcription start site region 124063
Gm3226 13 112593743 to 112595084 1341 - pseudogene predicted gene 3226
Tssr124064 13 112595185 to 112595186 1 - TSS region transcription start site region 124064
Ddx4 13 112598333 to 112652475 54142 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Tssr124065 13 112601799 to 112601819 20 - TSS region transcription start site region 124065
Tssr124066 13 112620676 to 112620683 7 - TSS region transcription start site region 124066
Tssr124067 13 112620712 to 112620720 8 - TSS region transcription start site region 124067
Tssr124068 13 112620737 to 112620746 9 - TSS region transcription start site region 124068
Tssr121139 13 112639465 to 112639477 12 + TSS region transcription start site region 121139
Tssr124069 13 112651417 to 112651421 4 - TSS region transcription start site region 124069
Cpgi6097 13 112651833 to 112652608 775 CpG island CpG island 6097
Tssr124070 13 112652241 to 112652255 14 - TSS region transcription start site region 124070
Tssr124071 13 112652269 to 112652276 7 - TSS region transcription start site region 124071
Tssr124072 13 112652295 to 112652355 60 - TSS region transcription start site region 124072
Tssr124073 13 112652357 to 112652370 13 - TSS region transcription start site region 124073
Cpgi6098 13 112660590 to 112661086 496 CpG island CpG island 6098
Tssr121140 13 112660671 to 112660682 11 + TSS region transcription start site region 121140
Tssr121141 13 112660739 to 112660795 56 + TSS region transcription start site region 121141
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Gm47827 13 112669139 to 112685696 16557 - antisense lncRNA gene predicted gene, 47827
Tssr124074 13 112673249 to 112673264 15 - TSS region transcription start site region 124074
Tssr121142 13 112673365 to 112673374 9 + TSS region transcription start site region 121142
Tssr121143 13 112673382 to 112673416 34 + TSS region transcription start site region 121143
Tssr121144 13 112673426 to 112673433 7 + TSS region transcription start site region 121144
D13Mit261 13 112682534 to 112682655 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 261
Gm18883 13 112699679 to 112700036 357 + pseudogene predicted gene, 18883
Tssr4177 13 112733684 to 112733689 5 + TSS region transcription start site region 4177
Cpgi6099 13 112744388 to 112744559 171 CpG island CpG island 6099
D13Mit293 13 112745437 to 112745556 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 293
Tssr124075 13 112746077 to 112746080 3 - TSS region transcription start site region 124075
Tssr121145 13 112752402 to 112752406 4 + TSS region transcription start site region 121145
Tssr124076 13 112753486 to 112753494 8 - TSS region transcription start site region 124076
Tssr124077 13 112760507 to 112760514 7 - TSS region transcription start site region 124077
D13Mit196 13 112761758 to 112761890 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 196
Mvwf4 13 112761890 to 20293442 -92468448 QTL modifier of von Willebrand factor 4
Tssr124078 13 112762706 to 112762710 4 - TSS region transcription start site region 124078
Tssr121146 13 112763978 to 112763984 6 + TSS region transcription start site region 121146
Gm47850 13 112764848 to 112765616 768 + lincRNA gene predicted gene, 47850
Gm41067 13 112768458 to 112799371 30913 + lncRNA gene predicted gene, 41067
1700125C05Rik 13 112800378 to 112800728 350 unclassified gene RIKEN cDNA 1700125C05 gene
Cpgi6100 13 112800450 to 112801922 1472 CpG island CpG island 6100
Tssr124079 13 112800577 to 112800588 11 - TSS region transcription start site region 124079
Tssr121147 13 112800776 to 112800781 5 + TSS region transcription start site region 121147
Tssr121148 13 112800786 to 112800822 36 + TSS region transcription start site region 121148
Plpp1 13 112800792 to 112867894 67102 + protein coding gene phospholipid phosphatase 1
Tssr4178 13 112800847 to 112800850 3 + TSS region transcription start site region 4178
Tssr121149 13 112800851 to 112800876 25 + TSS region transcription start site region 121149
Tssr121150 13 112800878 to 112800903 25 + TSS region transcription start site region 121150
Tssr121151 13 112800927 to 112800941 14 + TSS region transcription start site region 121151
Tssr121152 13 112800960 to 112800965 5 + TSS region transcription start site region 121152
Tssr121153 13 112801155 to 112801183 28 + TSS region transcription start site region 121153
D13Mit262 13 112814230 to 112814354 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 262
Tssr121154 13 112853231 to 112853252 21 + TSS region transcription start site region 121154
Mtrex 13 112867780 to 112927380 59600 - protein coding gene Mtr4 exosome RNA helicase
Tssr124080 13 112874124 to 112874133 9 - TSS region transcription start site region 124080
Gm26943 13 112884226 to 112885182 956 + pseudogene predicted gene, 26943
Cpgi6101 13 112926949 to 112928101 1152 CpG island CpG island 6101
Tssr124081 13 112927356 to 112927390 34 - TSS region transcription start site region 124081
Tssr124082 13 112927463 to 112927470 7 - TSS region transcription start site region 124082
Tssr124083 13 112927598 to 112927640 42 - TSS region transcription start site region 124083
Tssr121155 13 112927642 to 112927735 93 + TSS region transcription start site region 121155
Dhx29 13 112927793 to 112969187 41394 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 29
Tssr121156 13 112937554 to 112937560 6 + TSS region transcription start site region 121156
Gm8795 13 112937585 to 112938023 438 + pseudogene predicted gene 8795
Cpgi6102 13 112987148 to 112989165 2017 CpG island CpG island 6102
Ccno 13 112987802 to 112990777 2975 + protein coding gene cyclin O
Tssr121157 13 112987822 to 112987838 16 + TSS region transcription start site region 121157
Tssr121158 13 112987952 to 112987977 25 + TSS region transcription start site region 121158
Cpgi6103 13 112989464 to 112990020 556 CpG island CpG island 6103
Cpgi6104 13 112993482 to 112994653 1171 CpG island CpG island 6104
Tssr121159 13 112993793 to 112993820 27 + TSS region transcription start site region 121159
Tssr121160 13 112993822 to 112993838 16 + TSS region transcription start site region 121160
Tssr121161 13 112993840 to 112993869 29 + TSS region transcription start site region 121161
Mcidas 13 112993845 to 113000394 6549 + protein coding gene multiciliate differentiation and DNA synthesis associated cell cycle protein
Tssr121162 13 112993884 to 112993895 11 + TSS region transcription start site region 121162
6330437I11Rik 13 112997785 to 112999248 1463 unclassified non-coding RNA gene RIKEN cDNA 6330437I11 gene
Cpgi6105 13 112998363 to 112999183 820 CpG island CpG island 6105
Cpgi6106 13 113031745 to 113032556 811 CpG island CpG island 6106
Tssr121163 13 113032197 to 113032201 4 + TSS region transcription start site region 121163
Tssr121164 13 113033039 to 113033054 15 + TSS region transcription start site region 121164
Cpgi6107 13 113034896 to 113035526 630 CpG island CpG island 6107
Cdc20b 13 113035111 to 113091195 56084 + protein coding gene cell division cycle 20B
Tssr121165 13 113035227 to 113035231 4 + TSS region transcription start site region 121165
Mirc34 13 113035983 to 113037624 1641 complex/cluster/region microRNA cluster 34, including Mir449a through Mir449c
Mir449c 13 113035983 to 113036091 108 + miRNA gene microRNA 449c
Mir449b 13 113037419 to 113037498 79 + miRNA gene microRNA 449b
Mir449a 13 113037534 to 113037624 90 + miRNA gene microRNA 449a
Tssr121166 13 113037610 to 113037614 4 + TSS region transcription start site region 121166
Gm10735 13 113039301 to 113042243 2942 - protein coding gene predicted gene 10735
Gpx8 13 113042753 to 113046410 3657 - protein coding gene glutathione peroxidase 8 (putative)
2810411K19Rik 13 113044673 to 113045311 638 unclassified gene RIKEN cDNA 2810411K19 gene
Tssr124084 13 113046316 to 113046327 11 - TSS region transcription start site region 124084
Tssr124085 13 113046343 to 113046354 11 - TSS region transcription start site region 124085