Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:111697162-112647206

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Mier3 13 111686157 to 111718596 32439 + protein coding gene MIER family member 3
Tssr121072 13 111715931 to 111715935 4 + TSS region transcription start site region 121072
Gm15488 13 111721517 to 111724316 2799 - pseudogene predicted gene 15488
Cpgi6091 13 111724823 to 111726088 1265 CpG island CpG island 6091
Gm15287 13 111725517 to 111735124 9607 + antisense lncRNA gene predicted gene 15287
Map3k1 13 111746428 to 111808993 62565 - protein coding gene mitogen-activated protein kinase kinase kinase 1
Tssr124031 13 111748223 to 111748227 4 - TSS region transcription start site region 124031
Tssr124032 13 111748427 to 111748438 11 - TSS region transcription start site region 124032
Tssr124033 13 111771151 to 111771156 5 - TSS region transcription start site region 124033
Tssr124034 13 111777266 to 111777269 3 - TSS region transcription start site region 124034
Tssr124035 13 111796513 to 111796526 13 - TSS region transcription start site region 124035
Tssr124036 13 111797146 to 111797165 19 - TSS region transcription start site region 124036
Tssr121073 13 111797253 to 111797258 5 + TSS region transcription start site region 121073
Tssr4174 13 111805939 to 111805975 36 + TSS region transcription start site region 4174
Tssr121074 13 111807275 to 111807292 17 + TSS region transcription start site region 121074
Cpgi6092 13 111807718 to 111809961 2243 CpG island CpG island 6092
Tssr121075 13 111807760 to 111807778 18 + TSS region transcription start site region 121075
Tssr121076 13 111807784 to 111807822 38 + TSS region transcription start site region 121076
Tssr121077 13 111807837 to 111807860 23 + TSS region transcription start site region 121077
Tssr4175 13 111808647 to 111808650 3 - TSS region transcription start site region 4175
Tssr124037 13 111808684 to 111808701 17 - TSS region transcription start site region 124037
Tssr124038 13 111808750 to 111808766 16 - TSS region transcription start site region 124038
Tssr124039 13 111808938 to 111809018 80 - TSS region transcription start site region 124039
Gm15327 13 111809141 to 111811039 1898 + lncRNA gene predicted gene 15327
Tssr4176 13 111809517 to 111809534 17 - TSS region transcription start site region 4176
Gm41060 13 111819812 to 111838046 18234 + lncRNA gene predicted gene, 41060
Gm15325 13 111850316 to 111852622 2306 - lincRNA gene predicted gene 15325
Gm15324 13 111856996 to 111858505 1509 + lincRNA gene predicted gene 15324
Tssr121078 13 111867931 to 111867942 11 + TSS region transcription start site region 121078
Gm15326 13 111867936 to 111871937 4001 + lincRNA gene predicted gene 15326
Tssr121079 13 111867946 to 111867959 13 + TSS region transcription start site region 121079
Tssr121080 13 111868004 to 111868019 15 + TSS region transcription start site region 121080
Gm9025 13 111882252 to 111884419 2167 - pseudogene predicted gene 9025
Tssr124040 13 111884312 to 111884333 21 - TSS region transcription start site region 124040
Tssr124041 13 111884360 to 111884376 16 - TSS region transcription start site region 124041
D13Mit292 13 111900290 to 111900412 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 292
Gct9 13 111900290 to 111900412 122 QTL granulosa cell tumorigenesis 9
Tssr121081 13 111936206 to 111936233 27 + TSS region transcription start site region 121081
Tssr121082 13 111937089 to 111937095 6 + TSS region transcription start site region 121082
Tssr121083 13 111958357 to 111958360 3 + TSS region transcription start site region 121083
Cpgi6093 13 111977820 to 111978111 291 CpG island CpG island 6093
Tssr121084 13 111977960 to 111977990 30 + TSS region transcription start site region 121084
Tssr121085 13 111977999 to 111978008 9 + TSS region transcription start site region 121085
Tssr121086 13 111978017 to 111978024 7 + TSS region transcription start site region 121086
Tssr121087 13 111978103 to 111978112 9 + TSS region transcription start site region 121087
Tssr121088 13 111980626 to 111980655 29 + TSS region transcription start site region 121088
Tssr121089 13 111983026 to 111983059 33 + TSS region transcription start site region 121089
Tssr124042 13 111984049 to 111984060 11 - TSS region transcription start site region 124042
Tssr121090 13 111984278 to 111984288 10 + TSS region transcription start site region 121090
Gm15322 13 111991466 to 111995486 4020 + lincRNA gene predicted gene 15322
Tssr121091 13 112000031 to 112000043 12 + TSS region transcription start site region 121091
Gm15323 13 112001009 to 112012238 11229 + lincRNA gene predicted gene 15323
Tssr124043 13 112001187 to 112001195 8 - TSS region transcription start site region 124043
Tssr124044 13 112001240 to 112001252 12 - TSS region transcription start site region 124044
Tssr121092 13 112001415 to 112001426 11 + TSS region transcription start site region 121092
Tssr121093 13 112001434 to 112001443 9 + TSS region transcription start site region 121093
Tssr121094 13 112001901 to 112001924 23 + TSS region transcription start site region 121094
Gm41061 13 112038313 to 112041558 3245 - lncRNA gene predicted gene, 41061
Gm41062 13 112100504 to 112101699 1195 + lncRNA gene predicted gene, 41062
Cpgi6094 13 112100709 to 112101118 409 CpG island CpG island 6094
Tssr121095 13 112100916 to 112100944 28 + TSS region transcription start site region 121095
Gm31104 13 112138116 to 112139093 977 + pseudogene predicted gene, 31104
Gm48802 13 112165458 to 112172068 6610 - lincRNA gene predicted gene, 48802
Tssr124045 13 112172162 to 112172206 44 - TSS region transcription start site region 124045
Gm41063 13 112182285 to 112186031 3746 + lncRNA gene predicted gene, 41063
Tssr121096 13 112182503 to 112182517 14 + TSS region transcription start site region 121096
Gm33849 13 112186176 to 112191342 5166 + lncRNA gene predicted gene, 33849
Tssr121097 13 112188753 to 112188758 5 + TSS region transcription start site region 121097
Cpgi6095 13 112213677 to 112213960 283 CpG island CpG island 6095
Gm37427 13 112219193 to 112220481 1288 + unclassified gene predicted gene, 37427
Tssr121098 13 112263049 to 112263050 1 + TSS region transcription start site region 121098
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121099 13 112288496 to 112288507 11 + TSS region transcription start site region 121099
Tssr121100 13 112288516 to 112288548 32 + TSS region transcription start site region 121100
Tssr121101 13 112288580 to 112288594 14 + TSS region transcription start site region 121101
Tssr121102 13 112288790 to 112288806 16 + TSS region transcription start site region 121102
Tssr124046 13 112289148 to 112289152 4 - TSS region transcription start site region 124046
Gm22768 13 112291121 to 112291273 152 + snRNA gene predicted gene, 22768
D13Mit53 13 112294423 to 112294569 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 53
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
Tssr121103 13 112318389 to 112318405 16 + TSS region transcription start site region 121103
Tssr121104 13 112318416 to 112318437 21 + TSS region transcription start site region 121104
Tssr121105 13 112318447 to 112318458 11 + TSS region transcription start site region 121105
Tssr121106 13 112335929 to 112335942 13 + TSS region transcription start site region 121106
Tssr121107 13 112344739 to 112344745 6 + TSS region transcription start site region 121107
Tssr124047 13 112349221 to 112349246 25 - TSS region transcription start site region 124047
Gm41065 13 112351554 to 112355805 4251 - lncRNA gene predicted gene, 41065
Tssr124048 13 112354222 to 112354227 5 - TSS region transcription start site region 124048
Tssr124049 13 112354249 to 112354271 22 - TSS region transcription start site region 124049
Gm48837 13 112356925 to 112367845 10920 - antisense lncRNA gene predicted gene, 48837
Tssr121108 13 112363417 to 112363436 19 + TSS region transcription start site region 121108
Tssr121109 13 112363446 to 112363468 22 + TSS region transcription start site region 121109
D13Mit260 13 112365596 to 112365710 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 260
Rplag 13 112365596 to 112365710 114 QTL reduced platelet aggregation
Tssr121110 13 112366144 to 112366147 3 + TSS region transcription start site region 121110
Tssr121111 13 112367874 to 112367879 5 + TSS region transcription start site region 121111
Tssr121112 13 112367881 to 112367909 28 + TSS region transcription start site region 121112
Tssr121113 13 112373369 to 112373407 38 + TSS region transcription start site region 121113
D13Mit228 13 112388088 to 112388235 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 228
Gm33905 13 112411142 to 112423037 11895 + lncRNA gene predicted gene, 33905
2810403G07Rik 13 112414938 to 112417365 2427 - lincRNA gene RIKEN cDNA 2810403G07 gene
Tssr121114 13 112418142 to 112418184 42 + TSS region transcription start site region 121114
Gm48876 13 112424222 to 112426340 2118 - lincRNA gene predicted gene, 48876
Tssr124050 13 112424712 to 112424724 12 - TSS region transcription start site region 124050
Tssr121115 13 112427746 to 112427755 9 + TSS region transcription start site region 121115
Tssr121116 13 112427771 to 112427782 11 + TSS region transcription start site region 121116
Gm48879 13 112429434 to 112436596 7162 - lincRNA gene predicted gene, 48879
Tssr124051 13 112438039 to 112438062 23 - TSS region transcription start site region 124051
Tssr121117 13 112438148 to 112438178 30 + TSS region transcription start site region 121117
Tssr121118 13 112438227 to 112438232 5 + TSS region transcription start site region 121118
Tssr124052 13 112439987 to 112440001 14 - TSS region transcription start site region 124052
Tssr124053 13 112447258 to 112447290 32 - TSS region transcription start site region 124053
Tssr124054 13 112447323 to 112447332 9 - TSS region transcription start site region 124054
6720470G18Rik 13 112463095 to 112463976 881 unclassified gene RIKEN cDNA 6720470G18 gene
Tssr121119 13 112463599 to 112463638 39 + TSS region transcription start site region 121119
Cpgi6096 13 112463603 to 112464686 1083 CpG island CpG island 6096
Tssr124055 13 112463867 to 112463878 11 - TSS region transcription start site region 124055
Tssr124056 13 112463889 to 112463905 16 - TSS region transcription start site region 124056
Tssr124057 13 112463916 to 112463966 50 - TSS region transcription start site region 124057
Il6st 13 112464070 to 112506860 42790 + protein coding gene interleukin 6 signal transducer
Tssr121120 13 112464084 to 112464162 78 + TSS region transcription start site region 121120
Tssr121121 13 112464521 to 112464529 8 + TSS region transcription start site region 121121
Tssr121122 13 112465841 to 112465849 8 + TSS region transcription start site region 121122
Tssr121123 13 112466862 to 112466880 18 + TSS region transcription start site region 121123
Tssr121124 13 112467468 to 112467475 7 + TSS region transcription start site region 121124
Tssr121125 13 112467504 to 112467521 17 + TSS region transcription start site region 121125
Tssr121126 13 112474811 to 112474818 7 + TSS region transcription start site region 121126
Tssr121127 13 112480034 to 112480061 27 + TSS region transcription start site region 121127
Tssr121128 13 112480071 to 112480097 26 + TSS region transcription start site region 121128
Tssr121129 13 112481463 to 112481476 13 + TSS region transcription start site region 121129
Tssr121130 13 112482159 to 112482191 32 + TSS region transcription start site region 121130
Tssr121131 13 112488573 to 112488610 37 + TSS region transcription start site region 121131
Tssr121132 13 112489975 to 112489983 8 + TSS region transcription start site region 121132
Tssr121133 13 112495238 to 112495260 22 + TSS region transcription start site region 121133
Tssr121134 13 112504096 to 112504109 13 + TSS region transcription start site region 121134
Tssr121135 13 112507366 to 112507391 25 + TSS region transcription start site region 121135
Tssr121136 13 112508190 to 112508204 14 + TSS region transcription start site region 121136
Tssr121137 13 112509001 to 112509017 16 + TSS region transcription start site region 121137
Tssr121138 13 112509072 to 112509111 39 + TSS region transcription start site region 121138
Il31ra 13 112521849 to 112580732 58883 - protein coding gene interleukin 31 receptor A
Tssr124058 13 112552102 to 112552117 15 - TSS region transcription start site region 124058
Tssr124059 13 112552118 to 112552132 14 - TSS region transcription start site region 124059
Tssr124060 13 112562029 to 112562037 8 - TSS region transcription start site region 124060
Tssr124061 13 112578308 to 112578355 47 - TSS region transcription start site region 124061
Tssr124062 13 112580711 to 112580728 17 - TSS region transcription start site region 124062
Tssr124063 13 112591240 to 112591287 47 - TSS region transcription start site region 124063
Gm3226 13 112593743 to 112595084 1341 - pseudogene predicted gene 3226
Tssr124064 13 112595185 to 112595186 1 - TSS region transcription start site region 124064
Ddx4 13 112598333 to 112652475 54142 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Tssr124065 13 112601799 to 112601819 20 - TSS region transcription start site region 124065
Tssr124066 13 112620676 to 112620683 7 - TSS region transcription start site region 124066
Tssr124067 13 112620712 to 112620720 8 - TSS region transcription start site region 124067
Tssr124068 13 112620737 to 112620746 9 - TSS region transcription start site region 124068
Tssr121139 13 112639465 to 112639477 12 + TSS region transcription start site region 121139