Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:111471517-111974316

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpbp1 13 111425680 to 111490111 64431 - protein coding gene GC-rich promoter binding protein 1
Gm49496 13 111439229 to 111549947 110718 - protein coding gene predicted gene, 49496
Tssr124022 13 111482321 to 111482334 13 - TSS region transcription start site region 124022
Cpgi6089 13 111488618 to 111490884 2266 CpG island CpG island 6089
Tssr124023 13 111489769 to 111489772 3 - TSS region transcription start site region 124023
Tssr124024 13 111489773 to 111489793 20 - TSS region transcription start site region 124024
Tssr124025 13 111489835 to 111489890 55 - TSS region transcription start site region 124025
Tssr124026 13 111489897 to 111489919 22 - TSS region transcription start site region 124026
Tssr124027 13 111489969 to 111489978 9 - TSS region transcription start site region 124027
Tssr124028 13 111490055 to 111490100 45 - TSS region transcription start site region 124028
Tssr124029 13 111490121 to 111490139 18 - TSS region transcription start site region 124029
Tssr124030 13 111509345 to 111509363 18 - TSS region transcription start site region 124030
Gm15290 13 111522350 to 111549911 27561 - lincRNA gene predicted gene 15290
Gm15288 13 111561372 to 111568553 7181 - antisense lncRNA gene predicted gene 15288
Tssr4173 13 111578040 to 111578043 3 + TSS region transcription start site region 4173
Tssr121063 13 111580260 to 111580291 31 + TSS region transcription start site region 121063
Gm15286 13 111580261 to 111644830 64569 + lncRNA gene predicted gene 15286
Tssr121064 13 111580598 to 111580604 6 + TSS region transcription start site region 121064
Gm10198 13 111592785 to 111592856 71 + protein coding gene predicted gene 10198
Gm10736 13 111593534 to 111593611 77 - pseudogene predicted gene 10736
Cpgi6090 13 111685684 to 111687789 2105 CpG island CpG island 6090
Tssr121065 13 111686056 to 111686074 18 + TSS region transcription start site region 121065
Tssr121066 13 111686088 to 111686100 12 + TSS region transcription start site region 121066
Tssr121067 13 111686127 to 111686128 1 + TSS region transcription start site region 121067
Mier3 13 111686157 to 111718596 32439 + protein coding gene MIER family member 3
Tssr121068 13 111686199 to 111686210 11 + TSS region transcription start site region 121068
Tssr121069 13 111686225 to 111686240 15 + TSS region transcription start site region 121069
Tssr121070 13 111686303 to 111686346 43 + TSS region transcription start site region 121070
Tssr121071 13 111687764 to 111687774 10 + TSS region transcription start site region 121071
Tssr121072 13 111715931 to 111715935 4 + TSS region transcription start site region 121072
Gm15488 13 111721517 to 111724316 2799 - pseudogene predicted gene 15488
Cpgi6091 13 111724823 to 111726088 1265 CpG island CpG island 6091
Gm15287 13 111725517 to 111735124 9607 + antisense lncRNA gene predicted gene 15287
Map3k1 13 111746428 to 111808993 62565 - protein coding gene mitogen-activated protein kinase kinase kinase 1
Tssr124031 13 111748223 to 111748227 4 - TSS region transcription start site region 124031
Tssr124032 13 111748427 to 111748438 11 - TSS region transcription start site region 124032
Tssr124033 13 111771151 to 111771156 5 - TSS region transcription start site region 124033
Tssr124034 13 111777266 to 111777269 3 - TSS region transcription start site region 124034
Tssr124035 13 111796513 to 111796526 13 - TSS region transcription start site region 124035
Tssr124036 13 111797146 to 111797165 19 - TSS region transcription start site region 124036
Tssr121073 13 111797253 to 111797258 5 + TSS region transcription start site region 121073
Tssr4174 13 111805939 to 111805975 36 + TSS region transcription start site region 4174
Tssr121074 13 111807275 to 111807292 17 + TSS region transcription start site region 121074
Cpgi6092 13 111807718 to 111809961 2243 CpG island CpG island 6092
Tssr121075 13 111807760 to 111807778 18 + TSS region transcription start site region 121075
Tssr121076 13 111807784 to 111807822 38 + TSS region transcription start site region 121076
Tssr121077 13 111807837 to 111807860 23 + TSS region transcription start site region 121077
Tssr4175 13 111808647 to 111808650 3 - TSS region transcription start site region 4175
Tssr124037 13 111808684 to 111808701 17 - TSS region transcription start site region 124037
Tssr124038 13 111808750 to 111808766 16 - TSS region transcription start site region 124038
Tssr124039 13 111808938 to 111809018 80 - TSS region transcription start site region 124039
Gm15327 13 111809141 to 111811039 1898 + lncRNA gene predicted gene 15327
Tssr4176 13 111809517 to 111809534 17 - TSS region transcription start site region 4176
Gm41060 13 111819812 to 111838046 18234 + lncRNA gene predicted gene, 41060
Gm15325 13 111850316 to 111852622 2306 - lincRNA gene predicted gene 15325
Gm15324 13 111856996 to 111858505 1509 + lincRNA gene predicted gene 15324
Tssr121078 13 111867931 to 111867942 11 + TSS region transcription start site region 121078
Gm15326 13 111867936 to 111871937 4001 + lincRNA gene predicted gene 15326
Tssr121079 13 111867946 to 111867959 13 + TSS region transcription start site region 121079
Tssr121080 13 111868004 to 111868019 15 + TSS region transcription start site region 121080
Gm9025 13 111882252 to 111884419 2167 - pseudogene predicted gene 9025
Tssr124040 13 111884312 to 111884333 21 - TSS region transcription start site region 124040
Tssr124041 13 111884360 to 111884376 16 - TSS region transcription start site region 124041
Gct9 13 111900290 to 111900412 122 QTL granulosa cell tumorigenesis 9
D13Mit292 13 111900290 to 111900412 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 292
Tssr121081 13 111936206 to 111936233 27 + TSS region transcription start site region 121081
Tssr121082 13 111937089 to 111937095 6 + TSS region transcription start site region 121082
Tssr121083 13 111958357 to 111958360 3 + TSS region transcription start site region 121083