Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:111440261-111784830

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpbp1 13 111425680 to 111490111 64431 - protein coding gene GC-rich promoter binding protein 1
Gm49496 13 111439229 to 111549947 110718 - protein coding gene predicted gene, 49496
Tssr124021 13 111449223 to 111449272 49 - TSS region transcription start site region 124021
Tssr124022 13 111482321 to 111482334 13 - TSS region transcription start site region 124022
Cpgi6089 13 111488618 to 111490884 2266 CpG island CpG island 6089
Tssr124023 13 111489769 to 111489772 3 - TSS region transcription start site region 124023
Tssr124024 13 111489773 to 111489793 20 - TSS region transcription start site region 124024
Tssr124025 13 111489835 to 111489890 55 - TSS region transcription start site region 124025
Tssr124026 13 111489897 to 111489919 22 - TSS region transcription start site region 124026
Tssr124027 13 111489969 to 111489978 9 - TSS region transcription start site region 124027
Tssr124028 13 111490055 to 111490100 45 - TSS region transcription start site region 124028
Tssr124029 13 111490121 to 111490139 18 - TSS region transcription start site region 124029
Tssr124030 13 111509345 to 111509363 18 - TSS region transcription start site region 124030
Gm15290 13 111522350 to 111549911 27561 - lincRNA gene predicted gene 15290
Gm15288 13 111561372 to 111568553 7181 - antisense lncRNA gene predicted gene 15288
Tssr4173 13 111578040 to 111578043 3 + TSS region transcription start site region 4173
Tssr121063 13 111580260 to 111580291 31 + TSS region transcription start site region 121063
Gm15286 13 111580261 to 111644830 64569 + lncRNA gene predicted gene 15286
Tssr121064 13 111580598 to 111580604 6 + TSS region transcription start site region 121064
Gm10198 13 111592785 to 111592856 71 + protein coding gene predicted gene 10198
Gm10736 13 111593534 to 111593611 77 - pseudogene predicted gene 10736
Cpgi6090 13 111685684 to 111687789 2105 CpG island CpG island 6090
Tssr121065 13 111686056 to 111686074 18 + TSS region transcription start site region 121065
Tssr121066 13 111686088 to 111686100 12 + TSS region transcription start site region 121066
Tssr121067 13 111686127 to 111686128 1 + TSS region transcription start site region 121067
Mier3 13 111686157 to 111718596 32439 + protein coding gene MIER family member 3
Tssr121068 13 111686199 to 111686210 11 + TSS region transcription start site region 121068
Tssr121069 13 111686225 to 111686240 15 + TSS region transcription start site region 121069
Tssr121070 13 111686303 to 111686346 43 + TSS region transcription start site region 121070
Tssr121071 13 111687764 to 111687774 10 + TSS region transcription start site region 121071
Tssr121072 13 111715931 to 111715935 4 + TSS region transcription start site region 121072
Gm15488 13 111721517 to 111724316 2799 - pseudogene predicted gene 15488
Cpgi6091 13 111724823 to 111726088 1265 CpG island CpG island 6091
Gm15287 13 111725517 to 111735124 9607 + antisense lncRNA gene predicted gene 15287
Map3k1 13 111746428 to 111808993 62565 - protein coding gene mitogen-activated protein kinase kinase kinase 1
Tssr124031 13 111748223 to 111748227 4 - TSS region transcription start site region 124031
Tssr124032 13 111748427 to 111748438 11 - TSS region transcription start site region 124032
Tssr124033 13 111771151 to 111771156 5 - TSS region transcription start site region 124033
Tssr124034 13 111777266 to 111777269 3 - TSS region transcription start site region 124034