Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:109580598-113580604

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472 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Bglu2 13 108828769 to 110563377 1734608 QTL blood glucose level 2
9130219B18Rik 13 109583991 to 109584444 453 unclassified gene RIKEN cDNA 9130219B18 gene
Tssr121010 13 109632558 to 109632562 4 + TSS region transcription start site region 121010
Tssr121011 13 109632626 to 109632701 75 + TSS region transcription start site region 121011
Tssr121012 13 109632707 to 109632718 11 + TSS region transcription start site region 121012
Tssr121013 13 109632760 to 109632790 30 + TSS region transcription start site region 121013
A730009E18Rik 13 109640919 to 109643185 2266 unclassified gene RIKEN cDNA A730009E18 gene
2210416J07Rik 13 109645655 to 109647892 2237 unclassified gene RIKEN cDNA 2210416J07 gene
4833406M21Rik 13 109649923 to 109651729 1806 unclassified gene RIKEN cDNA 4833406M21 gene
Tssr121014 13 109685466 to 109685486 20 + TSS region transcription start site region 121014
Tssr121015 13 109685498 to 109685543 45 + TSS region transcription start site region 121015
Tssr121016 13 109685555 to 109685584 29 + TSS region transcription start site region 121016
Cpgi6082 13 109685558 to 109685748 190 CpG island CpG island 6082
Tssr121017 13 109685994 to 109686018 24 + TSS region transcription start site region 121017
Tssr4170 13 109726447 to 109726448 1 - TSS region transcription start site region 4170
D13Mit317 13 109731178 to 109731302 124 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 317
Tssr121018 13 109757192 to 109757199 7 + TSS region transcription start site region 121018
A630036H22Rik 13 109820818 to 109822498 1680 unclassified gene RIKEN cDNA A630036H22 gene
Tssr123999 13 109822428 to 109822440 12 - TSS region transcription start site region 123999
Cpgi6083 13 109822463 to 109822646 183 CpG island CpG island 6083
Tssr124000 13 109837654 to 109837665 11 - TSS region transcription start site region 124000
Tssr121019 13 109837777 to 109837786 9 + TSS region transcription start site region 121019
Tssr121020 13 109837792 to 109837806 14 + TSS region transcription start site region 121020
Tssr121021 13 109837814 to 109837823 9 + TSS region transcription start site region 121021
4930562M23Rik 13 109884221 to 109884869 648 unclassified gene RIKEN cDNA 4930562M23 gene
D13Mill2 13 109900954 to 109901072 118 DNA segment DNA segment, Chr 13, Millennium Pharmaceuticals Inc 2
Cpgi6084 13 109902434 to 109903759 1325 CpG island CpG island 6084
Tssr121022 13 109902637 to 109902700 63 + TSS region transcription start site region 121022
Tssr121023 13 109902833 to 109902855 22 + TSS region transcription start site region 121023
Tssr121024 13 109902856 to 109902867 11 + TSS region transcription start site region 121024
Tssr121025 13 109903053 to 109903064 11 + TSS region transcription start site region 121025
Tssr121026 13 109903089 to 109903110 21 + TSS region transcription start site region 121026
Tssr121027 13 109903123 to 109903133 10 + TSS region transcription start site region 121027
Tssr121028 13 109903366 to 109903381 15 + TSS region transcription start site region 121028
Tssr121029 13 109903388 to 109903406 18 + TSS region transcription start site region 121029
Tssr121030 13 109903433 to 109903441 8 + TSS region transcription start site region 121030
Tssr124001 13 109903659 to 109903691 32 - TSS region transcription start site region 124001
Tssr124002 13 109903698 to 109903716 18 - TSS region transcription start site region 124002
Mir1904 13 109903809 to 109903888 79 + miRNA gene microRNA 1904
D13Mill1 13 109904218 to 109904453 235 DNA segment DNA segment, Chr 13, Millennium Pharmaceuticals Inc 1
Tssr121031 13 109926832 to 109926881 49 + TSS region transcription start site region 121031
Tssr121032 13 109926887 to 109926913 26 + TSS region transcription start site region 121032
Tssr4171 13 109933855 to 109933872 17 + TSS region transcription start site region 4171
Tssr121033 13 109951397 to 109951416 19 + TSS region transcription start site region 121033
Tssr121034 13 109952105 to 109952109 4 + TSS region transcription start site region 121034
Gm32881 13 110006473 to 110022710 16237 + lncRNA gene predicted gene, 32881
Rab3c 13 110054187 to 110280996 226809 - protein coding gene RAB3C, member RAS oncogene family
Tssr124003 13 110060511 to 110060527 16 - TSS region transcription start site region 124003
Tssr124004 13 110060932 to 110060955 23 - TSS region transcription start site region 124004
Tssr124005 13 110127731 to 110127769 38 - TSS region transcription start site region 124005
Tssr124006 13 110127791 to 110127804 13 - TSS region transcription start site region 124006
Gm41057 13 110181118 to 110204666 23548 + lncRNA gene predicted gene, 41057
D13Mit130 13 110272953 to 110273090 137 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 130
Hipq1 13 110272953 to 119339836 9066883 QTL hyperinsulin production QTL 1
Cpgi6085 13 110279987 to 110280243 256 CpG island CpG island 6085
Tssr124007 13 110280065 to 110280074 9 - TSS region transcription start site region 124007
Tssr124008 13 110280079 to 110280094 15 - TSS region transcription start site region 124008
Tssr124009 13 110280103 to 110280213 110 - TSS region transcription start site region 124009
Cpgi6086 13 110280576 to 110280767 191 CpG island CpG island 6086
Tssr124010 13 110280654 to 110280671 17 - TSS region transcription start site region 124010
Tssr124011 13 110280839 to 110280858 19 - TSS region transcription start site region 124011
Tssr124012 13 110280886 to 110280906 20 - TSS region transcription start site region 124012
Tssr124013 13 110280991 to 110281037 46 - TSS region transcription start site region 124013
Gm5455 13 110304777 to 110305491 714 - pseudogene predicted pseudogene 5455
Gapt 13 110352616 to 110357199 4583 - protein coding gene Grb2-binding adaptor, transmembrane
Tssr124014 13 110357136 to 110357195 59 - TSS region transcription start site region 124014
Gm41058 13 110358444 to 110383294 24850 + lncRNA gene predicted gene, 41058
Tssr121035 13 110392921 to 110392960 39 + TSS region transcription start site region 121035
Cpgi6087 13 110394334 to 110395713 1379 CpG island CpG island 6087
Tssr121036 13 110394480 to 110394498 18 + TSS region transcription start site region 121036
Tssr121037 13 110394598 to 110394633 35 + TSS region transcription start site region 121037
Tssr124015 13 110394859 to 110394866 7 - TSS region transcription start site region 124015
Tssr121038 13 110395041 to 110395057 16 + TSS region transcription start site region 121038
Plk2 13 110395046 to 110400844 5798 + protein coding gene polo like kinase 2
Tssr121039 13 110395972 to 110395979 7 + TSS region transcription start site region 121039
Tssr121040 13 110396080 to 110396100 20 + TSS region transcription start site region 121040
Tssr121041 13 110396612 to 110396647 35 + TSS region transcription start site region 121041
Tssr121042 13 110396771 to 110396784 13 + TSS region transcription start site region 121042
Tssr121043 13 110396830 to 110396841 11 + TSS region transcription start site region 121043
Tssr121044 13 110396933 to 110396959 26 + TSS region transcription start site region 121044
Tssr121045 13 110396991 to 110397002 11 + TSS region transcription start site region 121045
Tssr121046 13 110397123 to 110397141 18 + TSS region transcription start site region 121046
Tssr121047 13 110397478 to 110397509 31 + TSS region transcription start site region 121047
Tssr124016 13 110397750 to 110397768 18 - TSS region transcription start site region 124016
Tssr121048 13 110397969 to 110397992 23 + TSS region transcription start site region 121048
Cpgi6088 13 110398992 to 110399319 327 CpG island CpG island 6088
Tssr121049 13 110399793 to 110399813 20 + TSS region transcription start site region 121049
Tssr121050 13 110399817 to 110399833 16 + TSS region transcription start site region 121050
Tssr121051 13 110399967 to 110399971 4 + TSS region transcription start site region 121051
Tssr121052 13 110400585 to 110400605 20 + TSS region transcription start site region 121052
Tssr121053 13 110400613 to 110400638 25 + TSS region transcription start site region 121053
Tssr121054 13 110400686 to 110400690 4 + TSS region transcription start site region 121054
Tssr4172 13 110415167 to 110415168 1 + TSS region transcription start site region 4172
D13Mit291 13 110439544 to 110439637 93 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 291
Tssr121055 13 110538431 to 110538434 3 + TSS region transcription start site region 121055
Tssr124017 13 110541358 to 110541385 27 - TSS region transcription start site region 124017
Tssr121056 13 110542062 to 110542066 4 + TSS region transcription start site region 121056
Tssr124018 13 110545444 to 110545461 17 - TSS region transcription start site region 124018
Tssr121057 13 110563224 to 110563229 5 + TSS region transcription start site region 121057
D13Mit76 13 110563270 to 110563377 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 76
lg 13 110563270 to 112761890 2198620 heritable phenotypic marker lid gap
Sod1m 13 110563377 to 99603460 -10959917 QTL superoxide dismutase 1, soluble, modifier
Gm32990 13 110568712 to 110578225 9513 + lncRNA gene predicted gene, 32990
Tssr124019 13 110601907 to 110601911 4 - TSS region transcription start site region 124019
Gm33045 13 110627288 to 110642730 15442 + lincRNA gene predicted gene, 33045
Tssr121058 13 110633759 to 110633761 2 + TSS region transcription start site region 121058
Gm41059 13 110642862 to 110656095 13233 + lncRNA gene predicted gene, 41059
Tssr121059 13 110683669 to 110683674 5 + TSS region transcription start site region 121059
Gm33172 13 110683826 to 110686694 2868 + lincRNA gene predicted gene, 33172
D13Rp3 13 110726199 to 110726359 160 DNA segment DNA segment, Chr 13, Roswell Park 3
D13Mit129 13 110738733 to 110738904 171 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 129
Heal2 13 110738733 to 110738904 171 QTL wound healing/regeneration 2
Tel-rs4 13 110743645 to 110744672 1027 unclassified gene telomere, related sequence 4
D13Rp4 13 110745106 to 110745235 129 DNA segment DNA segment, Chr 13, Roswell Park 4
Gm48533 13 110842905 to 110843121 216 - pseudogene predicted gene, 48533
Gm48534 13 110844574 to 110844936 362 - pseudogene predicted gene, 48534
Gm30839 13 110860413 to 110860671 258 - pseudogene predicted gene, 30839
Tssr121060 13 110864951 to 110864960 9 + TSS region transcription start site region 121060
4930526H09Rik 13 110882852 to 110903846 20994 - lincRNA gene RIKEN cDNA 4930526H09 gene
Gm38397 13 110903499 to 110908280 4781 + lincRNA gene predicted gene, 38397
Tssr124020 13 110941210 to 110941257 47 - TSS region transcription start site region 124020
Tssr121061 13 110943514 to 110943518 4 + TSS region transcription start site region 121061
Gm48547 13 111017523 to 111018821 1298 - pseudogene predicted gene, 48547
Gm18315 13 111175142 to 111176762 1620 - pseudogene predicted gene, 18315
3110015C05Rik 13 111211469 to 111229431 17962 - lincRNA gene RIKEN cDNA 3110015C05 gene
Tssr121062 13 111255010 to 111255018 8 + TSS region transcription start site region 121062
Actbl2 13 111255013 to 111257749 2736 + protein coding gene actin, beta-like 2
Gm15285 13 111361203 to 111361675 472 - pseudogene predicted gene 15285
Gm15289 13 111361676 to 111361919 243 + pseudogene predicted gene 15289
Gm6270 13 111361840 to 111368680 6840 - lincRNA gene predicted gene 6270
D13Mit230 13 111391865 to 111392012 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 230
Skmw18 13 111391865 to 111392012 147 QTL skeletal muscle weight 18
Gpbp1 13 111425680 to 111490111 64431 - protein coding gene GC-rich promoter binding protein 1
Gm49496 13 111439229 to 111549947 110718 - protein coding gene predicted gene, 49496
Tssr124021 13 111449223 to 111449272 49 - TSS region transcription start site region 124021
Tssr124022 13 111482321 to 111482334 13 - TSS region transcription start site region 124022
Cpgi6089 13 111488618 to 111490884 2266 CpG island CpG island 6089
Tssr124023 13 111489769 to 111489772 3 - TSS region transcription start site region 124023
Tssr124024 13 111489773 to 111489793 20 - TSS region transcription start site region 124024
Tssr124025 13 111489835 to 111489890 55 - TSS region transcription start site region 124025
Tssr124026 13 111489897 to 111489919 22 - TSS region transcription start site region 124026
Tssr124027 13 111489969 to 111489978 9 - TSS region transcription start site region 124027
Tssr124028 13 111490055 to 111490100 45 - TSS region transcription start site region 124028
Tssr124029 13 111490121 to 111490139 18 - TSS region transcription start site region 124029
Tssr124030 13 111509345 to 111509363 18 - TSS region transcription start site region 124030
Gm15290 13 111522350 to 111549911 27561 - lincRNA gene predicted gene 15290
Gm15288 13 111561372 to 111568553 7181 - antisense lncRNA gene predicted gene 15288
Tssr4173 13 111578040 to 111578043 3 + TSS region transcription start site region 4173
Tssr121063 13 111580260 to 111580291 31 + TSS region transcription start site region 121063
Gm15286 13 111580261 to 111644830 64569 + lncRNA gene predicted gene 15286
Tssr121064 13 111580598 to 111580604 6 + TSS region transcription start site region 121064
Gm10198 13 111592785 to 111592856 71 + protein coding gene predicted gene 10198
Gm10736 13 111593534 to 111593611 77 - pseudogene predicted gene 10736
Cpgi6090 13 111685684 to 111687789 2105 CpG island CpG island 6090
Tssr121065 13 111686056 to 111686074 18 + TSS region transcription start site region 121065
Tssr121066 13 111686088 to 111686100 12 + TSS region transcription start site region 121066
Tssr121067 13 111686127 to 111686128 1 + TSS region transcription start site region 121067
Mier3 13 111686157 to 111718596 32439 + protein coding gene MIER family member 3
Tssr121068 13 111686199 to 111686210 11 + TSS region transcription start site region 121068
Tssr121069 13 111686225 to 111686240 15 + TSS region transcription start site region 121069
Tssr121070 13 111686303 to 111686346 43 + TSS region transcription start site region 121070
Tssr121071 13 111687764 to 111687774 10 + TSS region transcription start site region 121071
Tssr121072 13 111715931 to 111715935 4 + TSS region transcription start site region 121072
Gm15488 13 111721517 to 111724316 2799 - pseudogene predicted gene 15488
Cpgi6091 13 111724823 to 111726088 1265 CpG island CpG island 6091
Gm15287 13 111725517 to 111735124 9607 + antisense lncRNA gene predicted gene 15287
Map3k1 13 111746428 to 111808993 62565 - protein coding gene mitogen-activated protein kinase kinase kinase 1
Tssr124031 13 111748223 to 111748227 4 - TSS region transcription start site region 124031
Tssr124032 13 111748427 to 111748438 11 - TSS region transcription start site region 124032
Tssr124033 13 111771151 to 111771156 5 - TSS region transcription start site region 124033
Tssr124034 13 111777266 to 111777269 3 - TSS region transcription start site region 124034
Tssr124035 13 111796513 to 111796526 13 - TSS region transcription start site region 124035
Tssr124036 13 111797146 to 111797165 19 - TSS region transcription start site region 124036
Tssr121073 13 111797253 to 111797258 5 + TSS region transcription start site region 121073
Tssr4174 13 111805939 to 111805975 36 + TSS region transcription start site region 4174
Tssr121074 13 111807275 to 111807292 17 + TSS region transcription start site region 121074
Cpgi6092 13 111807718 to 111809961 2243 CpG island CpG island 6092
Tssr121075 13 111807760 to 111807778 18 + TSS region transcription start site region 121075
Tssr121076 13 111807784 to 111807822 38 + TSS region transcription start site region 121076
Tssr121077 13 111807837 to 111807860 23 + TSS region transcription start site region 121077
Tssr4175 13 111808647 to 111808650 3 - TSS region transcription start site region 4175
Tssr124037 13 111808684 to 111808701 17 - TSS region transcription start site region 124037
Tssr124038 13 111808750 to 111808766 16 - TSS region transcription start site region 124038
Tssr124039 13 111808938 to 111809018 80 - TSS region transcription start site region 124039
Gm15327 13 111809141 to 111811039 1898 + lncRNA gene predicted gene 15327
Tssr4176 13 111809517 to 111809534 17 - TSS region transcription start site region 4176
Gm41060 13 111819812 to 111838046 18234 + lncRNA gene predicted gene, 41060
Gm15325 13 111850316 to 111852622 2306 - lincRNA gene predicted gene 15325
Gm15324 13 111856996 to 111858505 1509 + lincRNA gene predicted gene 15324
Tssr121078 13 111867931 to 111867942 11 + TSS region transcription start site region 121078
Gm15326 13 111867936 to 111871937 4001 + lincRNA gene predicted gene 15326
Tssr121079 13 111867946 to 111867959 13 + TSS region transcription start site region 121079
Tssr121080 13 111868004 to 111868019 15 + TSS region transcription start site region 121080
Gm9025 13 111882252 to 111884419 2167 - pseudogene predicted gene 9025
Tssr124040 13 111884312 to 111884333 21 - TSS region transcription start site region 124040
Tssr124041 13 111884360 to 111884376 16 - TSS region transcription start site region 124041
Gct9 13 111900290 to 111900412 122 QTL granulosa cell tumorigenesis 9
D13Mit292 13 111900290 to 111900412 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 292