Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:109308123-110498133

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Mir582 13 109324744 to 109324824 80 + miRNA gene microRNA 582
Tssr4169 13 109342651 to 109342653 2 + TSS region transcription start site region 4169
B930063P07Rik 13 109344632 to 109351654 7022 unclassified gene RIKEN cDNA B930063P07 gene
Gm32813 13 109381471 to 109400142 18671 - lncRNA gene predicted gene, 32813
Gm32703 13 109425166 to 109441193 16027 - lncRNA gene predicted gene, 32703
Tssr121006 13 109441041 to 109441097 56 + TSS region transcription start site region 121006
Tssr121007 13 109441112 to 109441132 20 + TSS region transcription start site region 121007
Tssr121008 13 109441134 to 109441145 11 + TSS region transcription start site region 121008
9530083O12Rik 13 109458601 to 109463839 5238 unclassified gene RIKEN cDNA 9530083O12 gene
Tssr121009 13 109478816 to 109478844 28 + TSS region transcription start site region 121009
9130219B18Rik 13 109583991 to 109584444 453 unclassified gene RIKEN cDNA 9130219B18 gene
Tssr121010 13 109632558 to 109632562 4 + TSS region transcription start site region 121010
Tssr121011 13 109632626 to 109632701 75 + TSS region transcription start site region 121011
Tssr121012 13 109632707 to 109632718 11 + TSS region transcription start site region 121012
Tssr121013 13 109632760 to 109632790 30 + TSS region transcription start site region 121013
A730009E18Rik 13 109640919 to 109643185 2266 unclassified gene RIKEN cDNA A730009E18 gene
2210416J07Rik 13 109645655 to 109647892 2237 unclassified gene RIKEN cDNA 2210416J07 gene
4833406M21Rik 13 109649923 to 109651729 1806 unclassified gene RIKEN cDNA 4833406M21 gene
Tssr121014 13 109685466 to 109685486 20 + TSS region transcription start site region 121014
Tssr121015 13 109685498 to 109685543 45 + TSS region transcription start site region 121015
Tssr121016 13 109685555 to 109685584 29 + TSS region transcription start site region 121016
Cpgi6082 13 109685558 to 109685748 190 CpG island CpG island 6082
Tssr121017 13 109685994 to 109686018 24 + TSS region transcription start site region 121017
Tssr4170 13 109726447 to 109726448 1 - TSS region transcription start site region 4170
D13Mit317 13 109731178 to 109731302 124 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 317
Tssr121018 13 109757192 to 109757199 7 + TSS region transcription start site region 121018
A630036H22Rik 13 109820818 to 109822498 1680 unclassified gene RIKEN cDNA A630036H22 gene
Tssr123999 13 109822428 to 109822440 12 - TSS region transcription start site region 123999
Cpgi6083 13 109822463 to 109822646 183 CpG island CpG island 6083
Tssr124000 13 109837654 to 109837665 11 - TSS region transcription start site region 124000
Tssr121019 13 109837777 to 109837786 9 + TSS region transcription start site region 121019
Tssr121020 13 109837792 to 109837806 14 + TSS region transcription start site region 121020
Tssr121021 13 109837814 to 109837823 9 + TSS region transcription start site region 121021
4930562M23Rik 13 109884221 to 109884869 648 unclassified gene RIKEN cDNA 4930562M23 gene
D13Mill2 13 109900954 to 109901072 118 DNA segment DNA segment, Chr 13, Millennium Pharmaceuticals Inc 2
Cpgi6084 13 109902434 to 109903759 1325 CpG island CpG island 6084
Tssr121022 13 109902637 to 109902700 63 + TSS region transcription start site region 121022
Tssr121023 13 109902833 to 109902855 22 + TSS region transcription start site region 121023
Tssr121024 13 109902856 to 109902867 11 + TSS region transcription start site region 121024
Tssr121025 13 109903053 to 109903064 11 + TSS region transcription start site region 121025
Tssr121026 13 109903089 to 109903110 21 + TSS region transcription start site region 121026
Tssr121027 13 109903123 to 109903133 10 + TSS region transcription start site region 121027
Tssr121028 13 109903366 to 109903381 15 + TSS region transcription start site region 121028
Tssr121029 13 109903388 to 109903406 18 + TSS region transcription start site region 121029
Tssr121030 13 109903433 to 109903441 8 + TSS region transcription start site region 121030
Tssr124001 13 109903659 to 109903691 32 - TSS region transcription start site region 124001
Tssr124002 13 109903698 to 109903716 18 - TSS region transcription start site region 124002
Mir1904 13 109903809 to 109903888 79 + miRNA gene microRNA 1904
D13Mill1 13 109904218 to 109904453 235 DNA segment DNA segment, Chr 13, Millennium Pharmaceuticals Inc 1
Tssr121031 13 109926832 to 109926881 49 + TSS region transcription start site region 121031
Tssr121032 13 109926887 to 109926913 26 + TSS region transcription start site region 121032
Tssr4171 13 109933855 to 109933872 17 + TSS region transcription start site region 4171
Tssr121033 13 109951397 to 109951416 19 + TSS region transcription start site region 121033
Tssr121034 13 109952105 to 109952109 4 + TSS region transcription start site region 121034
Gm32881 13 110006473 to 110022710 16237 + lncRNA gene predicted gene, 32881
Rab3c 13 110054187 to 110280996 226809 - protein coding gene RAB3C, member RAS oncogene family
Tssr124003 13 110060511 to 110060527 16 - TSS region transcription start site region 124003
Tssr124004 13 110060932 to 110060955 23 - TSS region transcription start site region 124004
Tssr124005 13 110127731 to 110127769 38 - TSS region transcription start site region 124005
Tssr124006 13 110127791 to 110127804 13 - TSS region transcription start site region 124006
Gm41057 13 110181118 to 110204666 23548 + lncRNA gene predicted gene, 41057
D13Mit130 13 110272953 to 110273090 137 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 130
Hipq1 13 110272953 to 119339836 9066883 QTL hyperinsulin production QTL 1
Cpgi6085 13 110279987 to 110280243 256 CpG island CpG island 6085
Tssr124007 13 110280065 to 110280074 9 - TSS region transcription start site region 124007
Tssr124008 13 110280079 to 110280094 15 - TSS region transcription start site region 124008
Tssr124009 13 110280103 to 110280213 110 - TSS region transcription start site region 124009
Cpgi6086 13 110280576 to 110280767 191 CpG island CpG island 6086
Tssr124010 13 110280654 to 110280671 17 - TSS region transcription start site region 124010
Tssr124011 13 110280839 to 110280858 19 - TSS region transcription start site region 124011
Tssr124012 13 110280886 to 110280906 20 - TSS region transcription start site region 124012
Tssr124013 13 110280991 to 110281037 46 - TSS region transcription start site region 124013
Gm5455 13 110304777 to 110305491 714 - pseudogene predicted pseudogene 5455
Gapt 13 110352616 to 110357199 4583 - protein coding gene Grb2-binding adaptor, transmembrane
Tssr124014 13 110357136 to 110357195 59 - TSS region transcription start site region 124014
Gm41058 13 110358444 to 110383294 24850 + lncRNA gene predicted gene, 41058
Tssr121035 13 110392921 to 110392960 39 + TSS region transcription start site region 121035
Cpgi6087 13 110394334 to 110395713 1379 CpG island CpG island 6087
Tssr121036 13 110394480 to 110394498 18 + TSS region transcription start site region 121036
Tssr121037 13 110394598 to 110394633 35 + TSS region transcription start site region 121037
Tssr124015 13 110394859 to 110394866 7 - TSS region transcription start site region 124015
Tssr121038 13 110395041 to 110395057 16 + TSS region transcription start site region 121038
Plk2 13 110395046 to 110400844 5798 + protein coding gene polo like kinase 2
Tssr121039 13 110395972 to 110395979 7 + TSS region transcription start site region 121039
Tssr121040 13 110396080 to 110396100 20 + TSS region transcription start site region 121040
Tssr121041 13 110396612 to 110396647 35 + TSS region transcription start site region 121041
Tssr121042 13 110396771 to 110396784 13 + TSS region transcription start site region 121042
Tssr121043 13 110396830 to 110396841 11 + TSS region transcription start site region 121043
Tssr121044 13 110396933 to 110396959 26 + TSS region transcription start site region 121044
Tssr121045 13 110396991 to 110397002 11 + TSS region transcription start site region 121045
Tssr121046 13 110397123 to 110397141 18 + TSS region transcription start site region 121046
Tssr121047 13 110397478 to 110397509 31 + TSS region transcription start site region 121047
Tssr124016 13 110397750 to 110397768 18 - TSS region transcription start site region 124016
Tssr121048 13 110397969 to 110397992 23 + TSS region transcription start site region 121048
Cpgi6088 13 110398992 to 110399319 327 CpG island CpG island 6088
Tssr121049 13 110399793 to 110399813 20 + TSS region transcription start site region 121049
Tssr121050 13 110399817 to 110399833 16 + TSS region transcription start site region 121050
Tssr121051 13 110399967 to 110399971 4 + TSS region transcription start site region 121051
Tssr121052 13 110400585 to 110400605 20 + TSS region transcription start site region 121052
Tssr121053 13 110400613 to 110400638 25 + TSS region transcription start site region 121053
Tssr121054 13 110400686 to 110400690 4 + TSS region transcription start site region 121054
Tssr4172 13 110415167 to 110415168 1 + TSS region transcription start site region 4172
D13Mit291 13 110439544 to 110439637 93 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 291