Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:108353694-109134520

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Depdc1b 13 108316013 to 108389566 73553 + protein coding gene DEP domain containing 1B
D13Mit170 13 108376858 to 108377055 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 170
Gm41056 13 108402067 to 108409406 7339 + lncRNA gene predicted gene, 41056
Gm32450 13 108437258 to 108448897 11639 + lncRNA gene predicted gene, 32450
Tssr120974 13 108446674 to 108446675 1 + TSS region transcription start site region 120974
Tssr120975 13 108449584 to 108449606 22 + TSS region transcription start site region 120975
Tssr120976 13 108449721 to 108449734 13 + TSS region transcription start site region 120976
Tssr120977 13 108449736 to 108449748 12 + TSS region transcription start site region 120977
Tssr120978 13 108449900 to 108449913 13 + TSS region transcription start site region 120978
Tssr120979 13 108449914 to 108449965 51 + TSS region transcription start site region 120979
Tssr120980 13 108450017 to 108450020 3 + TSS region transcription start site region 120980
Tssr4166 13 108465801 to 108465802 1 + TSS region transcription start site region 4166
Tssr120981 13 108471866 to 108471868 2 + TSS region transcription start site region 120981
D230040N21Rik 13 108495817 to 108498169 2352 unclassified non-coding RNA gene RIKEN cDNA D230040N21 gene
Gm27572 13 108498384 to 108498638 254 - lncRNA gene predicted gene, 27572
Tssr4167 13 108498502 to 108498550 48 - TSS region transcription start site region 4167
Tssr120982 13 108498641 to 108498665 24 + TSS region transcription start site region 120982
Gm28016 13 108498775 to 108498970 195 - unclassified non-coding RNA gene predicted gene, 28016
Tssr120983 13 108549190 to 108549191 1 + TSS region transcription start site region 120983
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Tssr120984 13 108670576 to 108670581 5 + TSS region transcription start site region 120984
Rps3a3 13 108670603 to 108671397 794 + pseudogene ribosomal protein S3A3
Gm6247 13 108743694 to 108744520 826 - pseudogene predicted gene 6247
Tssr120985 13 108775134 to 108775166 32 + TSS region transcription start site region 120985
Tssr120986 13 108775281 to 108775302 21 + TSS region transcription start site region 120986
Tssr120987 13 108775307 to 108775344 37 + TSS region transcription start site region 120987
Tanidd2 13 108828769 to 108828903 134 QTL TallyHo associated non-insulin dependent diabetes mellitus 2
D13Mit148 13 108828769 to 108828903 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 148
Bglu2 13 108828769 to 110563377 1734608 QTL blood glucose level 2
Tssr120988 13 108860072 to 108860106 34 + TSS region transcription start site region 120988
Tssr120989 13 108864391 to 108864401 10 + TSS region transcription start site region 120989
Tssr120990 13 108918097 to 108918101 4 + TSS region transcription start site region 120990
Tssr120991 13 108956149 to 108956157 8 + TSS region transcription start site region 120991
Tssr120992 13 109111046 to 109111054 8 + TSS region transcription start site region 120992
Cpgi6078 13 109116146 to 109117221 1075 CpG island CpG island 6078
Tssr120993 13 109116173 to 109116202 29 + TSS region transcription start site region 120993
Tssr120994 13 109116207 to 109116218 11 + TSS region transcription start site region 120994
Tssr120995 13 109116230 to 109116241 11 + TSS region transcription start site region 120995
Tssr120996 13 109116248 to 109116277 29 + TSS region transcription start site region 120996
Tssr120997 13 109116293 to 109116302 9 + TSS region transcription start site region 120997
Tssr120998 13 109116325 to 109116334 9 + TSS region transcription start site region 120998
Tssr120999 13 109116374 to 109116388 14 + TSS region transcription start site region 120999
Cpgi6079 13 109117587 to 109117898 311 CpG island CpG island 6079