Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:108340281-109210302

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Depdc1b 13 108316013 to 108389566 73553 + protein coding gene DEP domain containing 1B
D13Mit170 13 108376858 to 108377055 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 170
Gm41056 13 108402067 to 108409406 7339 + lncRNA gene predicted gene, 41056
Gm32450 13 108437258 to 108448897 11639 + lncRNA gene predicted gene, 32450
Tssr120974 13 108446674 to 108446675 1 + TSS region transcription start site region 120974
Tssr120975 13 108449584 to 108449606 22 + TSS region transcription start site region 120975
Tssr120976 13 108449721 to 108449734 13 + TSS region transcription start site region 120976
Tssr120977 13 108449736 to 108449748 12 + TSS region transcription start site region 120977
Tssr120978 13 108449900 to 108449913 13 + TSS region transcription start site region 120978
Tssr120979 13 108449914 to 108449965 51 + TSS region transcription start site region 120979
Tssr120980 13 108450017 to 108450020 3 + TSS region transcription start site region 120980
Tssr4166 13 108465801 to 108465802 1 + TSS region transcription start site region 4166
Tssr120981 13 108471866 to 108471868 2 + TSS region transcription start site region 120981
D230040N21Rik 13 108495817 to 108498169 2352 unclassified non-coding RNA gene RIKEN cDNA D230040N21 gene
Gm27572 13 108498384 to 108498638 254 - lncRNA gene predicted gene, 27572
Tssr4167 13 108498502 to 108498550 48 - TSS region transcription start site region 4167
Tssr120982 13 108498641 to 108498665 24 + TSS region transcription start site region 120982
Gm28016 13 108498775 to 108498970 195 - unclassified non-coding RNA gene predicted gene, 28016
Tssr120983 13 108549190 to 108549191 1 + TSS region transcription start site region 120983
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Tssr120984 13 108670576 to 108670581 5 + TSS region transcription start site region 120984
Rps3a3 13 108670603 to 108671397 794 + pseudogene ribosomal protein S3A3
Gm6247 13 108743694 to 108744520 826 - pseudogene predicted gene 6247
Tssr120985 13 108775134 to 108775166 32 + TSS region transcription start site region 120985
Tssr120986 13 108775281 to 108775302 21 + TSS region transcription start site region 120986
Tssr120987 13 108775307 to 108775344 37 + TSS region transcription start site region 120987
Bglu2 13 108828769 to 110563377 1734608 QTL blood glucose level 2
D13Mit148 13 108828769 to 108828903 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 148
Tanidd2 13 108828769 to 108828903 134 QTL TallyHo associated non-insulin dependent diabetes mellitus 2
Tssr120988 13 108860072 to 108860106 34 + TSS region transcription start site region 120988
Tssr120989 13 108864391 to 108864401 10 + TSS region transcription start site region 120989
Tssr120990 13 108918097 to 108918101 4 + TSS region transcription start site region 120990
Tssr120991 13 108956149 to 108956157 8 + TSS region transcription start site region 120991
Tssr120992 13 109111046 to 109111054 8 + TSS region transcription start site region 120992
Cpgi6078 13 109116146 to 109117221 1075 CpG island CpG island 6078
Tssr120993 13 109116173 to 109116202 29 + TSS region transcription start site region 120993
Tssr120994 13 109116207 to 109116218 11 + TSS region transcription start site region 120994
Tssr120995 13 109116230 to 109116241 11 + TSS region transcription start site region 120995
Tssr120996 13 109116248 to 109116277 29 + TSS region transcription start site region 120996
Tssr120997 13 109116293 to 109116302 9 + TSS region transcription start site region 120997
Tssr120998 13 109116325 to 109116334 9 + TSS region transcription start site region 120998
Tssr120999 13 109116374 to 109116388 14 + TSS region transcription start site region 120999
Cpgi6079 13 109117587 to 109117898 311 CpG island CpG island 6079
Tssr121000 13 109142777 to 109142794 17 + TSS region transcription start site region 121000
Gm18923 13 109163840 to 109164693 853 + pseudogene predicted gene, 18923
D13Mit289 13 109193251 to 109193372 121 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 289
Cpgi6080 13 109208692 to 109208909 217 CpG island CpG island 6080