Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:108113694-109374520

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndufaf2 13 108052589 to 108158655 106066 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 2
Cpgi6075 13 108158062 to 108159233 1171 CpG island CpG island 6075
Tssr123996 13 108158584 to 108158630 46 - TSS region transcription start site region 123996
Tssr120967 13 108158723 to 108158754 31 + TSS region transcription start site region 120967
Ercc8 13 108158731 to 108195364 36633 + protein coding gene excision repaiross-complementing rodent repair deficiency, complementation group 8
Gm32268 13 108159582 to 108166383 6801 - lncRNA gene predicted gene, 32268
Tssr123997 13 108164083 to 108164087 4 - TSS region transcription start site region 123997
Tssr120968 13 108211260 to 108211283 23 + TSS region transcription start site region 120968
Cpgi6076 13 108214101 to 108215254 1153 CpG island CpG island 6076
Tssr120969 13 108214389 to 108214454 65 + TSS region transcription start site region 120969
Elovl7 13 108214404 to 108285683 71279 + protein coding gene ELOVL family member 7, elongation of long chain fatty acids (yeast)
Gm32376 13 108220468 to 108220841 373 - pseudogene predicted gene, 32376
Gm30747 13 108233089 to 108233555 466 - pseudogene predicted gene, 30747
Hrtfm6 13 108247158 to 108247306 148 QTL heart failure modifier 6
D13Mit213 13 108247158 to 108247306 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 213
Gm8990 13 108309202 to 108310750 1548 - pseudogene predicted gene 8990
Tssr123998 13 108310983 to 108310985 2 - TSS region transcription start site region 123998
Gm2822 13 108313099 to 108316273 3174 - unclassified non-coding RNA gene predicted gene 2822
Cpgi6077 13 108315970 to 108316937 967 CpG island CpG island 6077
Depdc1b 13 108316013 to 108389566 73553 + protein coding gene DEP domain containing 1B
Tssr120970 13 108316340 to 108316358 18 + TSS region transcription start site region 120970
Tssr120971 13 108316366 to 108316387 21 + TSS region transcription start site region 120971
Tssr120972 13 108316395 to 108316407 12 + TSS region transcription start site region 120972
Tssr120973 13 108326521 to 108326537 16 + TSS region transcription start site region 120973
Tssr4164 13 108326559 to 108326567 8 + TSS region transcription start site region 4164
5830433M15Rik 13 108328428 to 108329879 1451 unclassified gene RIKEN cDNA 5830433M15 gene
Tssr4165 13 108335897 to 108335898 1 + TSS region transcription start site region 4165
D13Mit170 13 108376858 to 108377055 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 170
Gm41056 13 108402067 to 108409406 7339 + lncRNA gene predicted gene, 41056
Gm32450 13 108437258 to 108448897 11639 + lncRNA gene predicted gene, 32450
Tssr120974 13 108446674 to 108446675 1 + TSS region transcription start site region 120974
Tssr120975 13 108449584 to 108449606 22 + TSS region transcription start site region 120975
Tssr120976 13 108449721 to 108449734 13 + TSS region transcription start site region 120976
Tssr120977 13 108449736 to 108449748 12 + TSS region transcription start site region 120977
Tssr120978 13 108449900 to 108449913 13 + TSS region transcription start site region 120978
Tssr120979 13 108449914 to 108449965 51 + TSS region transcription start site region 120979
Tssr120980 13 108450017 to 108450020 3 + TSS region transcription start site region 120980
Tssr4166 13 108465801 to 108465802 1 + TSS region transcription start site region 4166
Tssr120981 13 108471866 to 108471868 2 + TSS region transcription start site region 120981
D230040N21Rik 13 108495817 to 108498169 2352 unclassified non-coding RNA gene RIKEN cDNA D230040N21 gene
Gm27572 13 108498384 to 108498638 254 - lncRNA gene predicted gene, 27572
Tssr4167 13 108498502 to 108498550 48 - TSS region transcription start site region 4167
Tssr120982 13 108498641 to 108498665 24 + TSS region transcription start site region 120982
Gm28016 13 108498775 to 108498970 195 - unclassified non-coding RNA gene predicted gene, 28016
Tssr120983 13 108549190 to 108549191 1 + TSS region transcription start site region 120983
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Tssr120984 13 108670576 to 108670581 5 + TSS region transcription start site region 120984
Rps3a3 13 108670603 to 108671397 794 + pseudogene ribosomal protein S3A3
Gm6247 13 108743694 to 108744520 826 - pseudogene predicted gene 6247
Tssr120985 13 108775134 to 108775166 32 + TSS region transcription start site region 120985
Tssr120986 13 108775281 to 108775302 21 + TSS region transcription start site region 120986
Tssr120987 13 108775307 to 108775344 37 + TSS region transcription start site region 120987
Bglu2 13 108828769 to 110563377 1734608 QTL blood glucose level 2
D13Mit148 13 108828769 to 108828903 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 148
Tanidd2 13 108828769 to 108828903 134 QTL TallyHo associated non-insulin dependent diabetes mellitus 2
Tssr120988 13 108860072 to 108860106 34 + TSS region transcription start site region 120988
Tssr120989 13 108864391 to 108864401 10 + TSS region transcription start site region 120989
Tssr120990 13 108918097 to 108918101 4 + TSS region transcription start site region 120990
Tssr120991 13 108956149 to 108956157 8 + TSS region transcription start site region 120991
Tssr120992 13 109111046 to 109111054 8 + TSS region transcription start site region 120992
Cpgi6078 13 109116146 to 109117221 1075 CpG island CpG island 6078
Tssr120993 13 109116173 to 109116202 29 + TSS region transcription start site region 120993
Tssr120994 13 109116207 to 109116218 11 + TSS region transcription start site region 120994
Tssr120995 13 109116230 to 109116241 11 + TSS region transcription start site region 120995
Tssr120996 13 109116248 to 109116277 29 + TSS region transcription start site region 120996
Tssr120997 13 109116293 to 109116302 9 + TSS region transcription start site region 120997
Tssr120998 13 109116325 to 109116334 9 + TSS region transcription start site region 120998
Tssr120999 13 109116374 to 109116388 14 + TSS region transcription start site region 120999
Cpgi6079 13 109117587 to 109117898 311 CpG island CpG island 6079
Tssr121000 13 109142777 to 109142794 17 + TSS region transcription start site region 121000
Gm18923 13 109163840 to 109164693 853 + pseudogene predicted gene, 18923
D13Mit289 13 109193251 to 109193372 121 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 289
Cpgi6080 13 109208692 to 109208909 217 CpG island CpG island 6080
D13Dcr16 13 109247441 to 109247539 98 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 16
Cpgi6081 13 109260304 to 109260805 501 CpG island CpG island 6081
Tssr121001 13 109260306 to 109260342 36 + TSS region transcription start site region 121001
Tssr121002 13 109260349 to 109260362 13 + TSS region transcription start site region 121002
Tssr121003 13 109260369 to 109260375 6 + TSS region transcription start site region 121003
Tssr121004 13 109260386 to 109260401 15 + TSS region transcription start site region 121004
Tssr121005 13 109260481 to 109260518 37 + TSS region transcription start site region 121005
Tssr4168 13 109260650 to 109260680 30 + TSS region transcription start site region 4168
Mir582 13 109324744 to 109324824 80 + miRNA gene microRNA 582
Tssr4169 13 109342651 to 109342653 2 + TSS region transcription start site region 4169
B930063P07Rik 13 109344632 to 109351654 7022 unclassified gene RIKEN cDNA B930063P07 gene