Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:106889144-107939729

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ipo11 13 106794439 to 106936958 142519 - protein coding gene importin 11
Tssr123968 13 106936086 to 106936087 1 - TSS region transcription start site region 123968
Cpgi6067 13 106936267 to 106937215 948 CpG island CpG island 6067
Tssr123969 13 106936886 to 106936898 12 - TSS region transcription start site region 123969
Tssr123970 13 106936907 to 106936952 45 - TSS region transcription start site region 123970
Gm48457 13 106945223 to 106945529 306 - pseudogene predicted gene, 48457
Cpgi6068 13 106946736 to 106947589 853 CpG island CpG island 6068
Tssr120949 13 106947104 to 106947164 60 + TSS region transcription start site region 120949
Dimt1 13 106947127 to 106960224 13097 + protein coding gene DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
Kif2a 13 106958996 to 107022126 63130 - protein coding gene kinesin family member 2A
Tssr123971 13 106962027 to 106962031 4 - TSS region transcription start site region 123971
Tssr123972 13 106988408 to 106988414 6 - TSS region transcription start site region 123972
Gm24431 13 106990402 to 106990467 65 - snoRNA gene predicted gene, 24431
D930043N17Rik 13 107011617 to 107012749 1132 unclassified gene RIKEN cDNA D930043N17 gene
Cpgi6069 13 107021375 to 107023044 1669 CpG island CpG island 6069
Tssr123973 13 107021746 to 107021754 8 - TSS region transcription start site region 123973
Tssr123974 13 107021761 to 107021772 11 - TSS region transcription start site region 123974
Tssr123975 13 107022068 to 107022138 70 - TSS region transcription start site region 123975
Tssr123976 13 107022269 to 107022276 7 - TSS region transcription start site region 123976
Tssr123977 13 107022313 to 107022362 49 - TSS region transcription start site region 123977
Tssr123978 13 107022383 to 107022394 11 - TSS region transcription start site region 123978
3830408C21Rik 13 107022570 to 107033518 10948 + lncRNA gene RIKEN cDNA 3830408C21 gene
Gm48684 13 107034284 to 107035217 933 + lincRNA gene predicted gene, 48684
Tssr120950 13 107034284 to 107034306 22 + TSS region transcription start site region 120950
Tssr120951 13 107063671 to 107063682 11 + TSS region transcription start site region 120951
Tssr120952 13 107063690 to 107063701 11 + TSS region transcription start site region 120952
Gm31452 13 107063693 to 107099252 35559 + lincRNA gene predicted gene, 31452
Tssr120953 13 107063719 to 107063736 17 + TSS region transcription start site region 120953
Tssr120954 13 107063737 to 107063755 18 + TSS region transcription start site region 120954
Gm41051 13 107121641 to 107130108 8467 + lncRNA gene predicted gene, 41051
Cpgi6070 13 107121739 to 107121899 160 CpG island CpG island 6070
Gm31715 13 107210533 to 107212526 1993 + lncRNA gene predicted gene, 31715
Gm2726 13 107279615 to 107280191 576 - pseudogene predicted gene 2726
Gm2736 13 107348204 to 107348516 312 + pseudogene predicted gene 2736
Apoo-ps 13 107414144 to 107414729 585 - pseudogene apolipoprotein O, pseudogene
Tssr123979 13 107414742 to 107414764 22 - TSS region transcription start site region 123979
Tssr120955 13 107469815 to 107469828 13 + TSS region transcription start site region 120955
AI197445 13 107469822 to 107479188 9366 + lincRNA gene expressed sequence AI197445
D13Mit288 13 107477080 to 107477188 108 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 288
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
Gm31803 13 107493275 to 107504526 11251 - lncRNA gene predicted gene, 31803
Tssr123980 13 107503439 to 107503453 14 - TSS region transcription start site region 123980
Gm32004 13 107524061 to 107565331 41270 - lncRNA gene predicted gene, 32004
Gm31920 13 107540690 to 107587943 47253 + lncRNA gene predicted gene, 31920
Gm2984 13 107545030 to 107547709 2679 unclassified gene predicted gene 2984
Tssr123981 13 107565322 to 107565336 14 - TSS region transcription start site region 123981
Tssr123982 13 107565339 to 107565350 11 - TSS region transcription start site region 123982
Gm32090 13 107605284 to 107612849 7565 - lincRNA gene predicted gene, 32090
Gm32186 13 107635752 to 107643271 7519 - lncRNA gene predicted gene, 32186
Cpgi6071 13 107645230 to 107645621 391 CpG island CpG island 6071
Tssr120956 13 107687388 to 107687402 14 + TSS region transcription start site region 120956
1700006H21Rik 13 107687397 to 107692168 4771 + lincRNA gene RIKEN cDNA 1700006H21 gene
Tssr120957 13 107687405 to 107687412 7 + TSS region transcription start site region 120957
Zswim6 13 107724617 to 107890064 165447 - protein coding gene zinc finger SWIM-type containing 6
Tssr123983 13 107726375 to 107726401 26 - TSS region transcription start site region 123983
Tssr4163 13 107744253 to 107744254 1 + TSS region transcription start site region 4163
Tssr123984 13 107767966 to 107767978 12 - TSS region transcription start site region 123984
Tssr123985 13 107782590 to 107782602 12 - TSS region transcription start site region 123985
Tssr123986 13 107794812 to 107794820 8 - TSS region transcription start site region 123986
2900011L18Rik 13 107815463 to 107816701 1238 unclassified gene RIKEN cDNA 2900011L18 gene
Tssr123987 13 107823548 to 107823553 5 - TSS region transcription start site region 123987
Gm22118 13 107829110 to 107829280 170 - miRNA gene predicted gene, 22118
Cpgi6072 13 107831164 to 107831392 228 CpG island CpG island 6072
Tssr123988 13 107842302 to 107842310 8 - TSS region transcription start site region 123988
9530027D23Rik 13 107851976 to 107852740 764 unclassified gene RIKEN cDNA 9530027D23 gene
Tssr123989 13 107857382 to 107857400 18 - TSS region transcription start site region 123989
Tssr123990 13 107858079 to 107858087 8 - TSS region transcription start site region 123990
9930031P18Rik 13 107863528 to 107867270 3742 unclassified gene RIKEN cDNA 9930031P18 gene
Tssr123991 13 107871233 to 107871238 5 - TSS region transcription start site region 123991
Gm41052 13 107877341 to 107878372 1031 + lncRNA gene predicted gene, 41052
Tssr123992 13 107885519 to 107885522 3 - TSS region transcription start site region 123992
Cpgi6073 13 107888356 to 107891799 3443 CpG island CpG island 6073
Tssr123993 13 107890059 to 107890073 14 - TSS region transcription start site region 123993
Tssr123994 13 107890075 to 107890084 9 - TSS region transcription start site region 123994
Tssr120958 13 107890640 to 107890658 18 + TSS region transcription start site region 120958
Tssr120959 13 107891085 to 107891100 15 + TSS region transcription start site region 120959
Gm41053 13 107923411 to 107930047 6636 + lncRNA gene predicted gene, 41053