Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:106290576-109620583

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit75 13 106469902 to 106470062 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 75
Gm7054 13 106475936 to 106476755 819 + pseudogene predicted gene 7054
D13Mit227 13 106518220 to 106518384 164 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 227
Gm48216 13 106530998 to 106531817 819 - pseudogene predicted gene, 48216
Dph3b-ps 13 106546815 to 106547060 245 - pseudogene diphthamide biosynthesis 3, pseudogene
Gm45940 13 106712003 to 106722044 10041 - lncRNA gene predicted gene, 45940
Gm30411 13 106747070 to 106761579 14509 - lincRNA gene predicted gene, 30411
Gm24527 13 106780114 to 106780220 106 - snRNA gene predicted gene, 24527
Gm28989 13 106788070 to 106796796 8726 + antisense lncRNA gene predicted gene 28989
Ipo11 13 106794439 to 106936958 142519 - protein coding gene importin 11
Tssr123965 13 106836295 to 106836323 28 - TSS region transcription start site region 123965
Tssr123966 13 106836347 to 106836380 33 - TSS region transcription start site region 123966
Tssr123967 13 106836389 to 106836402 13 - TSS region transcription start site region 123967
Gm28988 13 106851900 to 106853846 1946 + antisense lncRNA gene predicted gene 28988
Tssr123968 13 106936086 to 106936087 1 - TSS region transcription start site region 123968
Cpgi6067 13 106936267 to 106937215 948 CpG island CpG island 6067
Tssr123969 13 106936886 to 106936898 12 - TSS region transcription start site region 123969
Tssr123970 13 106936907 to 106936952 45 - TSS region transcription start site region 123970
Gm48457 13 106945223 to 106945529 306 - pseudogene predicted gene, 48457
Cpgi6068 13 106946736 to 106947589 853 CpG island CpG island 6068
Tssr120949 13 106947104 to 106947164 60 + TSS region transcription start site region 120949
Dimt1 13 106947127 to 106960224 13097 + protein coding gene DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
Kif2a 13 106958996 to 107022126 63130 - protein coding gene kinesin family member 2A
Tssr123971 13 106962027 to 106962031 4 - TSS region transcription start site region 123971
Tssr123972 13 106988408 to 106988414 6 - TSS region transcription start site region 123972
Gm24431 13 106990402 to 106990467 65 - snoRNA gene predicted gene, 24431
D930043N17Rik 13 107011617 to 107012749 1132 unclassified gene RIKEN cDNA D930043N17 gene
Cpgi6069 13 107021375 to 107023044 1669 CpG island CpG island 6069
Tssr123973 13 107021746 to 107021754 8 - TSS region transcription start site region 123973
Tssr123974 13 107021761 to 107021772 11 - TSS region transcription start site region 123974
Tssr123975 13 107022068 to 107022138 70 - TSS region transcription start site region 123975
Tssr123976 13 107022269 to 107022276 7 - TSS region transcription start site region 123976
Tssr123977 13 107022313 to 107022362 49 - TSS region transcription start site region 123977
Tssr123978 13 107022383 to 107022394 11 - TSS region transcription start site region 123978
3830408C21Rik 13 107022570 to 107033518 10948 + lncRNA gene RIKEN cDNA 3830408C21 gene
Tssr120950 13 107034284 to 107034306 22 + TSS region transcription start site region 120950
Gm48684 13 107034284 to 107035217 933 + lincRNA gene predicted gene, 48684
Tssr120951 13 107063671 to 107063682 11 + TSS region transcription start site region 120951
Tssr120952 13 107063690 to 107063701 11 + TSS region transcription start site region 120952
Gm31452 13 107063693 to 107099252 35559 + lincRNA gene predicted gene, 31452
Tssr120953 13 107063719 to 107063736 17 + TSS region transcription start site region 120953
Tssr120954 13 107063737 to 107063755 18 + TSS region transcription start site region 120954
Gm41051 13 107121641 to 107130108 8467 + lncRNA gene predicted gene, 41051
Cpgi6070 13 107121739 to 107121899 160 CpG island CpG island 6070
Gm31715 13 107210533 to 107212526 1993 + lncRNA gene predicted gene, 31715
Gm2726 13 107279615 to 107280191 576 - pseudogene predicted gene 2726
Gm2736 13 107348204 to 107348516 312 + pseudogene predicted gene 2736
Apoo-ps 13 107414144 to 107414729 585 - pseudogene apolipoprotein O, pseudogene
Tssr123979 13 107414742 to 107414764 22 - TSS region transcription start site region 123979
Tssr120955 13 107469815 to 107469828 13 + TSS region transcription start site region 120955
AI197445 13 107469822 to 107479188 9366 + lincRNA gene expressed sequence AI197445
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
D13Mit288 13 107477080 to 107477188 108 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 288
Gm31803 13 107493275 to 107504526 11251 - lncRNA gene predicted gene, 31803
Tssr123980 13 107503439 to 107503453 14 - TSS region transcription start site region 123980
Gm32004 13 107524061 to 107565331 41270 - lncRNA gene predicted gene, 32004
Gm31920 13 107540690 to 107587943 47253 + lncRNA gene predicted gene, 31920
Gm2984 13 107545030 to 107547709 2679 unclassified gene predicted gene 2984
Tssr123981 13 107565322 to 107565336 14 - TSS region transcription start site region 123981
Tssr123982 13 107565339 to 107565350 11 - TSS region transcription start site region 123982
Gm32090 13 107605284 to 107612849 7565 - lincRNA gene predicted gene, 32090
Gm32186 13 107635752 to 107643271 7519 - lncRNA gene predicted gene, 32186
Cpgi6071 13 107645230 to 107645621 391 CpG island CpG island 6071
Tssr120956 13 107687388 to 107687402 14 + TSS region transcription start site region 120956
1700006H21Rik 13 107687397 to 107692168 4771 + lincRNA gene RIKEN cDNA 1700006H21 gene
Tssr120957 13 107687405 to 107687412 7 + TSS region transcription start site region 120957
Zswim6 13 107724617 to 107890064 165447 - protein coding gene zinc finger SWIM-type containing 6
Tssr123983 13 107726375 to 107726401 26 - TSS region transcription start site region 123983
Tssr4163 13 107744253 to 107744254 1 + TSS region transcription start site region 4163
Tssr123984 13 107767966 to 107767978 12 - TSS region transcription start site region 123984
Tssr123985 13 107782590 to 107782602 12 - TSS region transcription start site region 123985
Tssr123986 13 107794812 to 107794820 8 - TSS region transcription start site region 123986
2900011L18Rik 13 107815463 to 107816701 1238 unclassified gene RIKEN cDNA 2900011L18 gene
Tssr123987 13 107823548 to 107823553 5 - TSS region transcription start site region 123987
Gm22118 13 107829110 to 107829280 170 - miRNA gene predicted gene, 22118
Cpgi6072 13 107831164 to 107831392 228 CpG island CpG island 6072
Tssr123988 13 107842302 to 107842310 8 - TSS region transcription start site region 123988
9530027D23Rik 13 107851976 to 107852740 764 unclassified gene RIKEN cDNA 9530027D23 gene
Tssr123989 13 107857382 to 107857400 18 - TSS region transcription start site region 123989
Tssr123990 13 107858079 to 107858087 8 - TSS region transcription start site region 123990
9930031P18Rik 13 107863528 to 107867270 3742 unclassified gene RIKEN cDNA 9930031P18 gene
Tssr123991 13 107871233 to 107871238 5 - TSS region transcription start site region 123991
Gm41052 13 107877341 to 107878372 1031 + lncRNA gene predicted gene, 41052
Tssr123992 13 107885519 to 107885522 3 - TSS region transcription start site region 123992
Cpgi6073 13 107888356 to 107891799 3443 CpG island CpG island 6073
Tssr123993 13 107890059 to 107890073 14 - TSS region transcription start site region 123993
Tssr123994 13 107890075 to 107890084 9 - TSS region transcription start site region 123994
Tssr120958 13 107890640 to 107890658 18 + TSS region transcription start site region 120958
Tssr120959 13 107891085 to 107891100 15 + TSS region transcription start site region 120959
Gm41053 13 107923411 to 107930047 6636 + lncRNA gene predicted gene, 41053
Gm38557 13 107944838 to 107956079 11241 - lncRNA gene predicted gene, 38557
Tssr120960 13 107955576 to 107955583 7 + TSS region transcription start site region 120960
Tssr120961 13 107955598 to 107955617 19 + TSS region transcription start site region 120961
Gm41054 13 107978143 to 107981517 3374 - lncRNA gene predicted gene, 41054
Tssr120962 13 107996328 to 107996347 19 + TSS region transcription start site region 120962
B230220B15Rik 13 107999101 to 108004669 5568 + lincRNA gene RIKEN cDNA B230220B15 gene
Gm41055 13 108018764 to 108034753 15989 - lncRNA gene predicted gene, 41055
3021401N23Rik 13 108042120 to 108044411 2291 unclassified gene RIKEN cDNA 3021401N23 gene
Cpgi6074 13 108043926 to 108045027 1101 CpG island CpG island 6074
Tssr120963 13 108044055 to 108044105 50 + TSS region transcription start site region 120963
Tssr123995 13 108044301 to 108044354 53 - TSS region transcription start site region 123995
Tssr120964 13 108044421 to 108044497 76 + TSS region transcription start site region 120964
Smim15 13 108044474 to 108049175 4701 + protein coding gene small integral membrane protein 15
Tssr120965 13 108045660 to 108045662 2 + TSS region transcription start site region 120965
Tssr120966 13 108046411 to 108046419 8 + TSS region transcription start site region 120966
Ndufaf2 13 108052589 to 108158655 106066 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 2
D13Mit149 13 108102805 to 108102997 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 149
Cpgi6075 13 108158062 to 108159233 1171 CpG island CpG island 6075
Tssr123996 13 108158584 to 108158630 46 - TSS region transcription start site region 123996
Tssr120967 13 108158723 to 108158754 31 + TSS region transcription start site region 120967
Ercc8 13 108158731 to 108195364 36633 + protein coding gene excision repaiross-complementing rodent repair deficiency, complementation group 8
Gm32268 13 108159582 to 108166383 6801 - lncRNA gene predicted gene, 32268
Tssr123997 13 108164083 to 108164087 4 - TSS region transcription start site region 123997
Tssr120968 13 108211260 to 108211283 23 + TSS region transcription start site region 120968
Cpgi6076 13 108214101 to 108215254 1153 CpG island CpG island 6076
Tssr120969 13 108214389 to 108214454 65 + TSS region transcription start site region 120969
Elovl7 13 108214404 to 108285683 71279 + protein coding gene ELOVL family member 7, elongation of long chain fatty acids (yeast)
Gm32376 13 108220468 to 108220841 373 - pseudogene predicted gene, 32376
Gm30747 13 108233089 to 108233555 466 - pseudogene predicted gene, 30747
Hrtfm6 13 108247158 to 108247306 148 QTL heart failure modifier 6
D13Mit213 13 108247158 to 108247306 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 213
Gm8990 13 108309202 to 108310750 1548 - pseudogene predicted gene 8990
Tssr123998 13 108310983 to 108310985 2 - TSS region transcription start site region 123998
Gm2822 13 108313099 to 108316273 3174 - unclassified non-coding RNA gene predicted gene 2822
Cpgi6077 13 108315970 to 108316937 967 CpG island CpG island 6077
Depdc1b 13 108316013 to 108389566 73553 + protein coding gene DEP domain containing 1B
Tssr120970 13 108316340 to 108316358 18 + TSS region transcription start site region 120970
Tssr120971 13 108316366 to 108316387 21 + TSS region transcription start site region 120971
Tssr120972 13 108316395 to 108316407 12 + TSS region transcription start site region 120972
Tssr120973 13 108326521 to 108326537 16 + TSS region transcription start site region 120973
Tssr4164 13 108326559 to 108326567 8 + TSS region transcription start site region 4164
5830433M15Rik 13 108328428 to 108329879 1451 unclassified gene RIKEN cDNA 5830433M15 gene
Tssr4165 13 108335897 to 108335898 1 + TSS region transcription start site region 4165
D13Mit170 13 108376858 to 108377055 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 170
Gm41056 13 108402067 to 108409406 7339 + lncRNA gene predicted gene, 41056
Gm32450 13 108437258 to 108448897 11639 + lncRNA gene predicted gene, 32450
Tssr120974 13 108446674 to 108446675 1 + TSS region transcription start site region 120974
Tssr120975 13 108449584 to 108449606 22 + TSS region transcription start site region 120975
Tssr120976 13 108449721 to 108449734 13 + TSS region transcription start site region 120976
Tssr120977 13 108449736 to 108449748 12 + TSS region transcription start site region 120977
Tssr120978 13 108449900 to 108449913 13 + TSS region transcription start site region 120978
Tssr120979 13 108449914 to 108449965 51 + TSS region transcription start site region 120979
Tssr120980 13 108450017 to 108450020 3 + TSS region transcription start site region 120980
Tssr4166 13 108465801 to 108465802 1 + TSS region transcription start site region 4166
Tssr120981 13 108471866 to 108471868 2 + TSS region transcription start site region 120981
D230040N21Rik 13 108495817 to 108498169 2352 unclassified non-coding RNA gene RIKEN cDNA D230040N21 gene
Gm27572 13 108498384 to 108498638 254 - lncRNA gene predicted gene, 27572
Tssr4167 13 108498502 to 108498550 48 - TSS region transcription start site region 4167
Tssr120982 13 108498641 to 108498665 24 + TSS region transcription start site region 120982
Gm28016 13 108498775 to 108498970 195 - unclassified non-coding RNA gene predicted gene, 28016
Tssr120983 13 108549190 to 108549191 1 + TSS region transcription start site region 120983
Pde4d 13 108654177 to 109955969 1301792 + protein coding gene phosphodiesterase 4D, cAMP specific
Tssr120984 13 108670576 to 108670581 5 + TSS region transcription start site region 120984
Rps3a3 13 108670603 to 108671397 794 + pseudogene ribosomal protein S3A3
Gm6247 13 108743694 to 108744520 826 - pseudogene predicted gene 6247
Tssr120985 13 108775134 to 108775166 32 + TSS region transcription start site region 120985
Tssr120986 13 108775281 to 108775302 21 + TSS region transcription start site region 120986
Tssr120987 13 108775307 to 108775344 37 + TSS region transcription start site region 120987
Tanidd2 13 108828769 to 108828903 134 QTL TallyHo associated non-insulin dependent diabetes mellitus 2
Bglu2 13 108828769 to 110563377 1734608 QTL blood glucose level 2
D13Mit148 13 108828769 to 108828903 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 148
Tssr120988 13 108860072 to 108860106 34 + TSS region transcription start site region 120988
Tssr120989 13 108864391 to 108864401 10 + TSS region transcription start site region 120989
Tssr120990 13 108918097 to 108918101 4 + TSS region transcription start site region 120990
Tssr120991 13 108956149 to 108956157 8 + TSS region transcription start site region 120991
Tssr120992 13 109111046 to 109111054 8 + TSS region transcription start site region 120992
Cpgi6078 13 109116146 to 109117221 1075 CpG island CpG island 6078
Tssr120993 13 109116173 to 109116202 29 + TSS region transcription start site region 120993
Tssr120994 13 109116207 to 109116218 11 + TSS region transcription start site region 120994
Tssr120995 13 109116230 to 109116241 11 + TSS region transcription start site region 120995
Tssr120996 13 109116248 to 109116277 29 + TSS region transcription start site region 120996
Tssr120997 13 109116293 to 109116302 9 + TSS region transcription start site region 120997
Tssr120998 13 109116325 to 109116334 9 + TSS region transcription start site region 120998
Tssr120999 13 109116374 to 109116388 14 + TSS region transcription start site region 120999
Cpgi6079 13 109117587 to 109117898 311 CpG island CpG island 6079
Tssr121000 13 109142777 to 109142794 17 + TSS region transcription start site region 121000
Gm18923 13 109163840 to 109164693 853 + pseudogene predicted gene, 18923
D13Mit289 13 109193251 to 109193372 121 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 289
Cpgi6080 13 109208692 to 109208909 217 CpG island CpG island 6080
D13Dcr16 13 109247441 to 109247539 98 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 16
Cpgi6081 13 109260304 to 109260805 501 CpG island CpG island 6081
Tssr121001 13 109260306 to 109260342 36 + TSS region transcription start site region 121001
Tssr121002 13 109260349 to 109260362 13 + TSS region transcription start site region 121002
Tssr121003 13 109260369 to 109260375 6 + TSS region transcription start site region 121003
Tssr121004 13 109260386 to 109260401 15 + TSS region transcription start site region 121004
Tssr121005 13 109260481 to 109260518 37 + TSS region transcription start site region 121005
Tssr4168 13 109260650 to 109260680 30 + TSS region transcription start site region 4168
Mir582 13 109324744 to 109324824 80 + miRNA gene microRNA 582
Tssr4169 13 109342651 to 109342653 2 + TSS region transcription start site region 4169
B930063P07Rik 13 109344632 to 109351654 7022 unclassified gene RIKEN cDNA B930063P07 gene
Gm32813 13 109381471 to 109400142 18671 - lncRNA gene predicted gene, 32813
Gm32703 13 109425166 to 109441193 16027 - lncRNA gene predicted gene, 32703
Tssr121006 13 109441041 to 109441097 56 + TSS region transcription start site region 121006
Tssr121007 13 109441112 to 109441132 20 + TSS region transcription start site region 121007
Tssr121008 13 109441134 to 109441145 11 + TSS region transcription start site region 121008
9530083O12Rik 13 109458601 to 109463839 5238 unclassified gene RIKEN cDNA 9530083O12 gene
Tssr121009 13 109478816 to 109478844 28 + TSS region transcription start site region 121009
9130219B18Rik 13 109583991 to 109584444 453 unclassified gene RIKEN cDNA 9130219B18 gene