Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:104508563-105219013

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr123922 13 104610625 to 104610636 11 - TSS region transcription start site region 123922
Tssr120929 13 104620199 to 104620204 5 + TSS region transcription start site region 120929
Tssr123923 13 104621645 to 104621652 7 - TSS region transcription start site region 123923
Tssr120930 13 104622701 to 104622718 17 + TSS region transcription start site region 120930
Tssr123924 13 104623318 to 104623332 14 - TSS region transcription start site region 123924
Tssr123925 13 104623336 to 104623352 16 - TSS region transcription start site region 123925
Tssr120931 13 104623457 to 104623460 3 + TSS region transcription start site region 120931
Cwc27 13 104631322 to 104816969 185647 - protein coding gene CWC27 spliceosome-associated protein
Cpgi6060 13 104660521 to 104660977 456 CpG island CpG island 6060
Tssr120932 13 104672439 to 104672440 1 + TSS region transcription start site region 120932
Tssr120933 13 104684907 to 104684920 13 + TSS region transcription start site region 120933
2610204G07Rik 13 104684931 to 104694994 10063 + antisense lncRNA gene RIKEN cDNA 2610204G07 gene
Tssr120934 13 104816545 to 104816569 24 + TSS region transcription start site region 120934
Tssr120935 13 104816582 to 104816590 8 + TSS region transcription start site region 120935
Cpgi6061 13 104816611 to 104817451 840 CpG island CpG island 6061
Tssr123926 13 104816868 to 104816886 18 - TSS region transcription start site region 123926
Tssr123927 13 104816889 to 104816905 16 - TSS region transcription start site region 123927
Tssr123928 13 104816908 to 104816951 43 - TSS region transcription start site region 123928
Tssr123929 13 104817124 to 104817153 29 - TSS region transcription start site region 123929
Srek1ip1 13 104817170 to 104838676 21506 + protein coding gene splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
Tssr120936 13 104817171 to 104817223 52 + TSS region transcription start site region 120936
Tssr120937 13 104817227 to 104817247 20 + TSS region transcription start site region 120937
Shisal2b 13 104845283 to 104863893 18610 - protein coding gene shisa like 2B
Tssr120938 13 104849604 to 104849615 11 + TSS region transcription start site region 120938
Tssr120939 13 104849625 to 104849637 12 + TSS region transcription start site region 120939
Tssr120940 13 104849645 to 104849654 9 + TSS region transcription start site region 120940
Cpgi6062 13 104863563 to 104864013 450 CpG island CpG island 6062
Tssr123930 13 104863883 to 104863894 11 - TSS region transcription start site region 123930
Tssr123931 13 104863913 to 104863921 8 - TSS region transcription start site region 123931
Gm41048 13 104914755 to 104921688 6933 + lncRNA gene predicted gene, 41048
Tssr120941 13 104918670 to 104918673 3 + TSS region transcription start site region 120941
Gm4938 13 104918780 to 104919176 396 + pseudogene predicted pseudogene 4938
Rgs7bp 13 104945904 to 105054930 109026 - protein coding gene regulator of G-protein signalling 7 binding protein
Tssr123932 13 104951432 to 104951451 19 - TSS region transcription start site region 123932
Tssr123933 13 104975980 to 104975982 2 - TSS region transcription start site region 123933
Cpgi6063 13 105053639 to 105055040 1401 CpG island CpG island 6063
Tssr123934 13 105054246 to 105054258 12 - TSS region transcription start site region 123934
Tssr123935 13 105054369 to 105054382 13 - TSS region transcription start site region 123935
Tssr123936 13 105054439 to 105054562 123 - TSS region transcription start site region 123936
Tssr123937 13 105054580 to 105054630 50 - TSS region transcription start site region 123937
Tssr123938 13 105054782 to 105054792 10 - TSS region transcription start site region 123938
Tssr123939 13 105054797 to 105054821 24 - TSS region transcription start site region 123939
Tssr123940 13 105054826 to 105054847 21 - TSS region transcription start site region 123940
Tssr123941 13 105054849 to 105054864 15 - TSS region transcription start site region 123941
Tssr123942 13 105054895 to 105054906 11 - TSS region transcription start site region 123942
Cpgi6064 13 105082106 to 105082309 203 CpG island CpG island 6064
Tssr120942 13 105082117 to 105082127 10 + TSS region transcription start site region 120942
4933425L06Rik 13 105082122 to 105121782 39660 + protein coding gene RIKEN cDNA 4933425L06 gene
Rnf180 13 105130567 to 105294818 164251 - protein coding gene ring finger protein 180
D13Mit270 13 105184838 to 105184984 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 270