Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:104373769-113283903

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758 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Adamts6 13 104287835 to 104496695 208860 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
Tssr4161 13 104377053 to 104377057 4 + TSS region transcription start site region 4161
Tssr120927 13 104398386 to 104398388 2 + TSS region transcription start site region 120927
Tssr120928 13 104430896 to 104430900 4 + TSS region transcription start site region 120928
Gm8680 13 104430931 to 104432507 1576 - pseudogene predicted gene 8680
Tssr123921 13 104431403 to 104431404 1 - TSS region transcription start site region 123921
D13Mit51 13 104469495 to 104469640 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 51
Tssr123922 13 104610625 to 104610636 11 - TSS region transcription start site region 123922
Tssr120929 13 104620199 to 104620204 5 + TSS region transcription start site region 120929
Tssr123923 13 104621645 to 104621652 7 - TSS region transcription start site region 123923
Tssr120930 13 104622701 to 104622718 17 + TSS region transcription start site region 120930
Tssr123924 13 104623318 to 104623332 14 - TSS region transcription start site region 123924
Tssr123925 13 104623336 to 104623352 16 - TSS region transcription start site region 123925
Tssr120931 13 104623457 to 104623460 3 + TSS region transcription start site region 120931
Cwc27 13 104631322 to 104816969 185647 - protein coding gene CWC27 spliceosome-associated protein
Cpgi6060 13 104660521 to 104660977 456 CpG island CpG island 6060
Tssr120932 13 104672439 to 104672440 1 + TSS region transcription start site region 120932
Tssr120933 13 104684907 to 104684920 13 + TSS region transcription start site region 120933
2610204G07Rik 13 104684931 to 104694994 10063 + antisense lncRNA gene RIKEN cDNA 2610204G07 gene
Tssr120934 13 104816545 to 104816569 24 + TSS region transcription start site region 120934
Tssr120935 13 104816582 to 104816590 8 + TSS region transcription start site region 120935
Cpgi6061 13 104816611 to 104817451 840 CpG island CpG island 6061
Tssr123926 13 104816868 to 104816886 18 - TSS region transcription start site region 123926
Tssr123927 13 104816889 to 104816905 16 - TSS region transcription start site region 123927
Tssr123928 13 104816908 to 104816951 43 - TSS region transcription start site region 123928
Tssr123929 13 104817124 to 104817153 29 - TSS region transcription start site region 123929
Srek1ip1 13 104817170 to 104838676 21506 + protein coding gene splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
Tssr120936 13 104817171 to 104817223 52 + TSS region transcription start site region 120936
Tssr120937 13 104817227 to 104817247 20 + TSS region transcription start site region 120937
Shisal2b 13 104845283 to 104863893 18610 - protein coding gene shisa like 2B
Tssr120938 13 104849604 to 104849615 11 + TSS region transcription start site region 120938
Tssr120939 13 104849625 to 104849637 12 + TSS region transcription start site region 120939
Tssr120940 13 104849645 to 104849654 9 + TSS region transcription start site region 120940
Cpgi6062 13 104863563 to 104864013 450 CpG island CpG island 6062
Tssr123930 13 104863883 to 104863894 11 - TSS region transcription start site region 123930
Tssr123931 13 104863913 to 104863921 8 - TSS region transcription start site region 123931
Gm41048 13 104914755 to 104921688 6933 + lncRNA gene predicted gene, 41048
Tssr120941 13 104918670 to 104918673 3 + TSS region transcription start site region 120941
Gm4938 13 104918780 to 104919176 396 + pseudogene predicted pseudogene 4938
Rgs7bp 13 104945904 to 105054930 109026 - protein coding gene regulator of G-protein signalling 7 binding protein
Tssr123932 13 104951432 to 104951451 19 - TSS region transcription start site region 123932
Tssr123933 13 104975980 to 104975982 2 - TSS region transcription start site region 123933
Cpgi6063 13 105053639 to 105055040 1401 CpG island CpG island 6063
Tssr123934 13 105054246 to 105054258 12 - TSS region transcription start site region 123934
Tssr123935 13 105054369 to 105054382 13 - TSS region transcription start site region 123935
Tssr123936 13 105054439 to 105054562 123 - TSS region transcription start site region 123936
Tssr123937 13 105054580 to 105054630 50 - TSS region transcription start site region 123937
Tssr123938 13 105054782 to 105054792 10 - TSS region transcription start site region 123938
Tssr123939 13 105054797 to 105054821 24 - TSS region transcription start site region 123939
Tssr123940 13 105054826 to 105054847 21 - TSS region transcription start site region 123940
Tssr123941 13 105054849 to 105054864 15 - TSS region transcription start site region 123941
Tssr123942 13 105054895 to 105054906 11 - TSS region transcription start site region 123942
Cpgi6064 13 105082106 to 105082309 203 CpG island CpG island 6064
Tssr120942 13 105082117 to 105082127 10 + TSS region transcription start site region 120942
4933425L06Rik 13 105082122 to 105121782 39660 + protein coding gene RIKEN cDNA 4933425L06 gene
Rnf180 13 105130567 to 105294818 164251 - protein coding gene ring finger protein 180
D13Mit270 13 105184838 to 105184984 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 270
Gm25631 13 105223269 to 105223398 129 - snoRNA gene predicted gene, 25631
Tssr123943 13 105242634 to 105242649 15 - TSS region transcription start site region 123943
Tssr123944 13 105242652 to 105242666 14 - TSS region transcription start site region 123944
Tssr123945 13 105242797 to 105242810 13 - TSS region transcription start site region 123945
Tssr123946 13 105249686 to 105249708 22 - TSS region transcription start site region 123946
Tssr123947 13 105249709 to 105249750 41 - TSS region transcription start site region 123947
Tssr123948 13 105249801 to 105249816 15 - TSS region transcription start site region 123948
Tssr123949 13 105250438 to 105250447 9 - TSS region transcription start site region 123949
Tssr123950 13 105250449 to 105250479 30 - TSS region transcription start site region 123950
Tssr123951 13 105250490 to 105250499 9 - TSS region transcription start site region 123951
D13Mit73 13 105285511 to 105285678 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 73
Sgp5 13 105285678 to 56322643 -48963035 QTL serum gp70 production 5
Tssr120943 13 105291621 to 105291626 5 + TSS region transcription start site region 120943
Tssr123952 13 105291914 to 105291938 24 - TSS region transcription start site region 123952
Tssr123953 13 105291952 to 105291974 22 - TSS region transcription start site region 123953
Tssr123954 13 105293004 to 105293015 11 - TSS region transcription start site region 123954
Cpgi6065 13 105293725 to 105294808 1083 CpG island CpG island 6065
Tssr123955 13 105294290 to 105294302 12 - TSS region transcription start site region 123955
Tssr123956 13 105294303 to 105294340 37 - TSS region transcription start site region 123956
Tssr123957 13 105294349 to 105294358 9 - TSS region transcription start site region 123957
Tssr123958 13 105294381 to 105294419 38 - TSS region transcription start site region 123958
Tssr123959 13 105294426 to 105294471 45 - TSS region transcription start site region 123959
Tssr123960 13 105294657 to 105294666 9 - TSS region transcription start site region 123960
Tssr123961 13 105294819 to 105294829 10 - TSS region transcription start site region 123961
Tssr123962 13 105299288 to 105299291 3 - TSS region transcription start site region 123962
Tssr123963 13 105299706 to 105299716 10 - TSS region transcription start site region 123963
Tssr123964 13 105299748 to 105299775 27 - TSS region transcription start site region 123964
Tssr120944 13 105308060 to 105308086 26 + TSS region transcription start site region 120944
Gm41049 13 105311429 to 105324918 13489 + lncRNA gene predicted gene, 41049
Gm31130 13 105409655 to 105432605 22950 + lncRNA gene predicted gene, 31130
Htr1a 13 105443693 to 105448133 4440 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 1A
Cpgi6066 13 105443922 to 105445297 1375 CpG island CpG island 6066
Tssr120945 13 105444261 to 105444271 10 + TSS region transcription start site region 120945
Gm41050 13 105486672 to 105502918 16246 + lncRNA gene predicted gene, 41050
Gm48208 13 105568754 to 105569963 1209 - pseudogene predicted gene, 48208
Acigg6 13 105683731 to 89583537 -16100194 QTL anti COL7 IgG2a/c antibody 6
Gm48211 13 105833453 to 105833678 225 - pseudogene predicted gene, 48211
Gm10739 13 105838547 to 106019783 181236 + lincRNA gene predicted gene 10739
D13Mit74 13 105889813 to 105889961 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 74
Tssr120946 13 105898941 to 105898957 16 + TSS region transcription start site region 120946
Gm48212 13 105901764 to 105902140 376 + pseudogene predicted gene, 48212
D13Mit316 13 105904963 to 105905111 148 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 316
Gm48214 13 106042124 to 106042481 357 + pseudogene predicted gene, 48214
Tssr4162 13 106191409 to 106191411 2 - TSS region transcription start site region 4162
Olfr717-ps1 13 106197216 to 106197771 555 - pseudogene olfactory receptor 717, pseudogene 1
Tssr120947 13 106260622 to 106260627 5 + TSS region transcription start site region 120947
Tssr120948 13 106283144 to 106283156 12 + TSS region transcription start site region 120948
D13Mit75 13 106469902 to 106470062 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 75
Gm7054 13 106475936 to 106476755 819 + pseudogene predicted gene 7054
D13Mit227 13 106518220 to 106518384 164 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 227
Gm48216 13 106530998 to 106531817 819 - pseudogene predicted gene, 48216
Dph3b-ps 13 106546815 to 106547060 245 - pseudogene diphthamide biosynthesis 3, pseudogene
Gm45940 13 106712003 to 106722044 10041 - lncRNA gene predicted gene, 45940
Gm30411 13 106747070 to 106761579 14509 - lincRNA gene predicted gene, 30411
Gm24527 13 106780114 to 106780220 106 - snRNA gene predicted gene, 24527
Gm28989 13 106788070 to 106796796 8726 + antisense lncRNA gene predicted gene 28989
Ipo11 13 106794439 to 106936958 142519 - protein coding gene importin 11
Tssr123965 13 106836295 to 106836323 28 - TSS region transcription start site region 123965
Tssr123966 13 106836347 to 106836380 33 - TSS region transcription start site region 123966
Tssr123967 13 106836389 to 106836402 13 - TSS region transcription start site region 123967
Gm28988 13 106851900 to 106853846 1946 + antisense lncRNA gene predicted gene 28988
Tssr123968 13 106936086 to 106936087 1 - TSS region transcription start site region 123968
Cpgi6067 13 106936267 to 106937215 948 CpG island CpG island 6067
Tssr123969 13 106936886 to 106936898 12 - TSS region transcription start site region 123969
Tssr123970 13 106936907 to 106936952 45 - TSS region transcription start site region 123970
Gm48457 13 106945223 to 106945529 306 - pseudogene predicted gene, 48457
Cpgi6068 13 106946736 to 106947589 853 CpG island CpG island 6068
Tssr120949 13 106947104 to 106947164 60 + TSS region transcription start site region 120949
Dimt1 13 106947127 to 106960224 13097 + protein coding gene DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
Kif2a 13 106958996 to 107022126 63130 - protein coding gene kinesin family member 2A
Tssr123971 13 106962027 to 106962031 4 - TSS region transcription start site region 123971
Tssr123972 13 106988408 to 106988414 6 - TSS region transcription start site region 123972
Gm24431 13 106990402 to 106990467 65 - snoRNA gene predicted gene, 24431
D930043N17Rik 13 107011617 to 107012749 1132 unclassified gene RIKEN cDNA D930043N17 gene
Cpgi6069 13 107021375 to 107023044 1669 CpG island CpG island 6069
Tssr123973 13 107021746 to 107021754 8 - TSS region transcription start site region 123973
Tssr123974 13 107021761 to 107021772 11 - TSS region transcription start site region 123974
Tssr123975 13 107022068 to 107022138 70 - TSS region transcription start site region 123975
Tssr123976 13 107022269 to 107022276 7 - TSS region transcription start site region 123976
Tssr123977 13 107022313 to 107022362 49 - TSS region transcription start site region 123977
Tssr123978 13 107022383 to 107022394 11 - TSS region transcription start site region 123978
3830408C21Rik 13 107022570 to 107033518 10948 + lncRNA gene RIKEN cDNA 3830408C21 gene
Gm48684 13 107034284 to 107035217 933 + lincRNA gene predicted gene, 48684
Tssr120950 13 107034284 to 107034306 22 + TSS region transcription start site region 120950
Tssr120951 13 107063671 to 107063682 11 + TSS region transcription start site region 120951
Tssr120952 13 107063690 to 107063701 11 + TSS region transcription start site region 120952
Gm31452 13 107063693 to 107099252 35559 + lincRNA gene predicted gene, 31452
Tssr120953 13 107063719 to 107063736 17 + TSS region transcription start site region 120953
Tssr120954 13 107063737 to 107063755 18 + TSS region transcription start site region 120954
Gm41051 13 107121641 to 107130108 8467 + lncRNA gene predicted gene, 41051
Cpgi6070 13 107121739 to 107121899 160 CpG island CpG island 6070
Gm31715 13 107210533 to 107212526 1993 + lncRNA gene predicted gene, 31715
Gm2726 13 107279615 to 107280191 576 - pseudogene predicted gene 2726
Gm2736 13 107348204 to 107348516 312 + pseudogene predicted gene 2736
Apoo-ps 13 107414144 to 107414729 585 - pseudogene apolipoprotein O, pseudogene
Tssr123979 13 107414742 to 107414764 22 - TSS region transcription start site region 123979
Tssr120955 13 107469815 to 107469828 13 + TSS region transcription start site region 120955
AI197445 13 107469822 to 107479188 9366 + lincRNA gene expressed sequence AI197445
D13Mit288 13 107477080 to 107477188 108 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 288
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
Gm31803 13 107493275 to 107504526 11251 - lncRNA gene predicted gene, 31803
Tssr123980 13 107503439 to 107503453 14 - TSS region transcription start site region 123980
Gm32004 13 107524061 to 107565331 41270 - lncRNA gene predicted gene, 32004
Gm31920 13 107540690 to 107587943 47253 + lncRNA gene predicted gene, 31920
Gm2984 13 107545030 to 107547709 2679 unclassified gene predicted gene 2984
Tssr123981 13 107565322 to 107565336 14 - TSS region transcription start site region 123981
Tssr123982 13 107565339 to 107565350 11 - TSS region transcription start site region 123982
Gm32090 13 107605284 to 107612849 7565 - lincRNA gene predicted gene, 32090
Gm32186 13 107635752 to 107643271 7519 - lncRNA gene predicted gene, 32186
Cpgi6071 13 107645230 to 107645621 391 CpG island CpG island 6071
Tssr120956 13 107687388 to 107687402 14 + TSS region transcription start site region 120956
1700006H21Rik 13 107687397 to 107692168 4771 + lincRNA gene RIKEN cDNA 1700006H21 gene
Tssr120957 13 107687405 to 107687412 7 + TSS region transcription start site region 120957
Zswim6 13 107724617 to 107890064 165447 - protein coding gene zinc finger SWIM-type containing 6
Tssr123983 13 107726375 to 107726401 26 - TSS region transcription start site region 123983
Tssr4163 13 107744253 to 107744254 1 + TSS region transcription start site region 4163
Tssr123984 13 107767966 to 107767978 12 - TSS region transcription start site region 123984
Tssr123985 13 107782590 to 107782602 12 - TSS region transcription start site region 123985
Tssr123986 13 107794812 to 107794820 8 - TSS region transcription start site region 123986
2900011L18Rik 13 107815463 to 107816701 1238 unclassified gene RIKEN cDNA 2900011L18 gene
Tssr123987 13 107823548 to 107823553 5 - TSS region transcription start site region 123987
Gm22118 13 107829110 to 107829280 170 - miRNA gene predicted gene, 22118
Cpgi6072 13 107831164 to 107831392 228 CpG island CpG island 6072
Tssr123988 13 107842302 to 107842310 8 - TSS region transcription start site region 123988
9530027D23Rik 13 107851976 to 107852740 764 unclassified gene RIKEN cDNA 9530027D23 gene
Tssr123989 13 107857382 to 107857400 18 - TSS region transcription start site region 123989
Tssr123990 13 107858079 to 107858087 8 - TSS region transcription start site region 123990
9930031P18Rik 13 107863528 to 107867270 3742 unclassified gene RIKEN cDNA 9930031P18 gene
Tssr123991 13 107871233 to 107871238 5 - TSS region transcription start site region 123991
Gm41052 13 107877341 to 107878372 1031 + lncRNA gene predicted gene, 41052
Tssr123992 13 107885519 to 107885522 3 - TSS region transcription start site region 123992
Cpgi6073 13 107888356 to 107891799 3443 CpG island CpG island 6073
Tssr123993 13 107890059 to 107890073 14 - TSS region transcription start site region 123993
Tssr123994 13 107890075 to 107890084 9 - TSS region transcription start site region 123994
Tssr120958 13 107890640 to 107890658 18 + TSS region transcription start site region 120958
Tssr120959 13 107891085 to 107891100 15 + TSS region transcription start site region 120959
Gm41053 13 107923411 to 107930047 6636 + lncRNA gene predicted gene, 41053
Gm38557 13 107944838 to 107956079 11241 - lncRNA gene predicted gene, 38557
Tssr120960 13 107955576 to 107955583 7 + TSS region transcription start site region 120960
Tssr120961 13 107955598 to 107955617 19 + TSS region transcription start site region 120961
Gm41054 13 107978143 to 107981517 3374 - lncRNA gene predicted gene, 41054
Tssr120962 13 107996328 to 107996347 19 + TSS region transcription start site region 120962