Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:104136889-105496905

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgtb 13 104109741 to 104141735 31994 + protein coding gene small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
Trappc13 13 104142149 to 104178469 36320 - protein coding gene trafficking protein particle complex 13
Tssr120909 13 104157175 to 104157180 5 + TSS region transcription start site region 120909
Cpgi6058 13 104177884 to 104179222 1338 CpG island CpG island 6058
Tssr4159 13 104178144 to 104178156 12 - TSS region transcription start site region 4159
Tssr123916 13 104178168 to 104178181 13 - TSS region transcription start site region 123916
Tssr123917 13 104178399 to 104178480 81 - TSS region transcription start site region 123917
Trim23 13 104178797 to 104203372 24575 + protein coding gene tripartite motif-containing 23
Tssr120910 13 104178798 to 104178872 74 + TSS region transcription start site region 120910
Ppwd1 13 104205124 to 104228843 23719 - protein coding gene peptidylprolyl isomerase domain and WD repeat containing 1
Tssr123918 13 104205341 to 104205345 4 - TSS region transcription start site region 123918
Cpgi6059 13 104228384 to 104229295 911 CpG island CpG island 6059
Cenpk 13 104228611 to 104249622 21011 + protein coding gene centromere protein K
Tssr123919 13 104228802 to 104228828 26 - TSS region transcription start site region 123919
Tssr123920 13 104228833 to 104228849 16 - TSS region transcription start site region 123920
Tssr120911 13 104228929 to 104228982 53 + TSS region transcription start site region 120911
Tssr120912 13 104228983 to 104228990 7 + TSS region transcription start site region 120912
Tssr120913 13 104228994 to 104229005 11 + TSS region transcription start site region 120913
Tssr4160 13 104229007 to 104229012 5 + TSS region transcription start site region 4160
Tssr120914 13 104229366 to 104229386 20 + TSS region transcription start site region 120914
Tssr120915 13 104287033 to 104287062 29 + TSS region transcription start site region 120915
Tssr120916 13 104287089 to 104287107 18 + TSS region transcription start site region 120916
Tssr120917 13 104287118 to 104287132 14 + TSS region transcription start site region 120917
Tssr120918 13 104287136 to 104287147 11 + TSS region transcription start site region 120918
Tssr120919 13 104287357 to 104287379 22 + TSS region transcription start site region 120919
Tssr120920 13 104287452 to 104287466 14 + TSS region transcription start site region 120920
Tssr120921 13 104287491 to 104287498 7 + TSS region transcription start site region 120921
Tssr120922 13 104287508 to 104287524 16 + TSS region transcription start site region 120922
Adamts6 13 104287835 to 104496695 208860 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
Tssr120923 13 104287855 to 104287882 27 + TSS region transcription start site region 120923
Tssr120924 13 104287902 to 104287923 21 + TSS region transcription start site region 120924
Tssr120925 13 104287932 to 104287962 30 + TSS region transcription start site region 120925
Tssr120926 13 104296463 to 104296469 6 + TSS region transcription start site region 120926
Tssr4161 13 104377053 to 104377057 4 + TSS region transcription start site region 4161
Tssr120927 13 104398386 to 104398388 2 + TSS region transcription start site region 120927
Tssr120928 13 104430896 to 104430900 4 + TSS region transcription start site region 120928
Gm8680 13 104430931 to 104432507 1576 - pseudogene predicted gene 8680
Tssr123921 13 104431403 to 104431404 1 - TSS region transcription start site region 123921
D13Mit51 13 104469495 to 104469640 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 51
Tssr123922 13 104610625 to 104610636 11 - TSS region transcription start site region 123922
Tssr120929 13 104620199 to 104620204 5 + TSS region transcription start site region 120929
Tssr123923 13 104621645 to 104621652 7 - TSS region transcription start site region 123923
Tssr120930 13 104622701 to 104622718 17 + TSS region transcription start site region 120930
Tssr123924 13 104623318 to 104623332 14 - TSS region transcription start site region 123924
Tssr123925 13 104623336 to 104623352 16 - TSS region transcription start site region 123925
Tssr120931 13 104623457 to 104623460 3 + TSS region transcription start site region 120931
Cwc27 13 104631322 to 104816969 185647 - protein coding gene CWC27 spliceosome-associated protein
Cpgi6060 13 104660521 to 104660977 456 CpG island CpG island 6060
Tssr120932 13 104672439 to 104672440 1 + TSS region transcription start site region 120932
Tssr120933 13 104684907 to 104684920 13 + TSS region transcription start site region 120933
2610204G07Rik 13 104684931 to 104694994 10063 + antisense lncRNA gene RIKEN cDNA 2610204G07 gene
Tssr120934 13 104816545 to 104816569 24 + TSS region transcription start site region 120934
Tssr120935 13 104816582 to 104816590 8 + TSS region transcription start site region 120935
Cpgi6061 13 104816611 to 104817451 840 CpG island CpG island 6061
Tssr123926 13 104816868 to 104816886 18 - TSS region transcription start site region 123926
Tssr123927 13 104816889 to 104816905 16 - TSS region transcription start site region 123927
Tssr123928 13 104816908 to 104816951 43 - TSS region transcription start site region 123928
Tssr123929 13 104817124 to 104817153 29 - TSS region transcription start site region 123929
Srek1ip1 13 104817170 to 104838676 21506 + protein coding gene splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
Tssr120936 13 104817171 to 104817223 52 + TSS region transcription start site region 120936
Tssr120937 13 104817227 to 104817247 20 + TSS region transcription start site region 120937
Shisal2b 13 104845283 to 104863893 18610 - protein coding gene shisa like 2B
Tssr120938 13 104849604 to 104849615 11 + TSS region transcription start site region 120938
Tssr120939 13 104849625 to 104849637 12 + TSS region transcription start site region 120939
Tssr120940 13 104849645 to 104849654 9 + TSS region transcription start site region 120940
Cpgi6062 13 104863563 to 104864013 450 CpG island CpG island 6062
Tssr123930 13 104863883 to 104863894 11 - TSS region transcription start site region 123930
Tssr123931 13 104863913 to 104863921 8 - TSS region transcription start site region 123931
Gm41048 13 104914755 to 104921688 6933 + lncRNA gene predicted gene, 41048
Tssr120941 13 104918670 to 104918673 3 + TSS region transcription start site region 120941
Gm4938 13 104918780 to 104919176 396 + pseudogene predicted pseudogene 4938
Rgs7bp 13 104945904 to 105054930 109026 - protein coding gene regulator of G-protein signalling 7 binding protein
Tssr123932 13 104951432 to 104951451 19 - TSS region transcription start site region 123932
Tssr123933 13 104975980 to 104975982 2 - TSS region transcription start site region 123933
Cpgi6063 13 105053639 to 105055040 1401 CpG island CpG island 6063
Tssr123934 13 105054246 to 105054258 12 - TSS region transcription start site region 123934
Tssr123935 13 105054369 to 105054382 13 - TSS region transcription start site region 123935
Tssr123936 13 105054439 to 105054562 123 - TSS region transcription start site region 123936
Tssr123937 13 105054580 to 105054630 50 - TSS region transcription start site region 123937
Tssr123938 13 105054782 to 105054792 10 - TSS region transcription start site region 123938
Tssr123939 13 105054797 to 105054821 24 - TSS region transcription start site region 123939
Tssr123940 13 105054826 to 105054847 21 - TSS region transcription start site region 123940
Tssr123941 13 105054849 to 105054864 15 - TSS region transcription start site region 123941
Tssr123942 13 105054895 to 105054906 11 - TSS region transcription start site region 123942
Cpgi6064 13 105082106 to 105082309 203 CpG island CpG island 6064
Tssr120942 13 105082117 to 105082127 10 + TSS region transcription start site region 120942
4933425L06Rik 13 105082122 to 105121782 39660 + protein coding gene RIKEN cDNA 4933425L06 gene
Rnf180 13 105130567 to 105294818 164251 - protein coding gene ring finger protein 180
D13Mit270 13 105184838 to 105184984 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 270
Gm25631 13 105223269 to 105223398 129 - snoRNA gene predicted gene, 25631
Tssr123943 13 105242634 to 105242649 15 - TSS region transcription start site region 123943
Tssr123944 13 105242652 to 105242666 14 - TSS region transcription start site region 123944
Tssr123945 13 105242797 to 105242810 13 - TSS region transcription start site region 123945
Tssr123946 13 105249686 to 105249708 22 - TSS region transcription start site region 123946
Tssr123947 13 105249709 to 105249750 41 - TSS region transcription start site region 123947
Tssr123948 13 105249801 to 105249816 15 - TSS region transcription start site region 123948
Tssr123949 13 105250438 to 105250447 9 - TSS region transcription start site region 123949
Tssr123950 13 105250449 to 105250479 30 - TSS region transcription start site region 123950
Tssr123951 13 105250490 to 105250499 9 - TSS region transcription start site region 123951
D13Mit73 13 105285511 to 105285678 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 73
Sgp5 13 105285678 to 56322643 -48963035 QTL serum gp70 production 5
Tssr120943 13 105291621 to 105291626 5 + TSS region transcription start site region 120943
Tssr123952 13 105291914 to 105291938 24 - TSS region transcription start site region 123952
Tssr123953 13 105291952 to 105291974 22 - TSS region transcription start site region 123953
Tssr123954 13 105293004 to 105293015 11 - TSS region transcription start site region 123954
Cpgi6065 13 105293725 to 105294808 1083 CpG island CpG island 6065
Tssr123955 13 105294290 to 105294302 12 - TSS region transcription start site region 123955
Tssr123956 13 105294303 to 105294340 37 - TSS region transcription start site region 123956
Tssr123957 13 105294349 to 105294358 9 - TSS region transcription start site region 123957
Tssr123958 13 105294381 to 105294419 38 - TSS region transcription start site region 123958
Tssr123959 13 105294426 to 105294471 45 - TSS region transcription start site region 123959
Tssr123960 13 105294657 to 105294666 9 - TSS region transcription start site region 123960
Tssr123961 13 105294819 to 105294829 10 - TSS region transcription start site region 123961
Tssr123962 13 105299288 to 105299291 3 - TSS region transcription start site region 123962
Tssr123963 13 105299706 to 105299716 10 - TSS region transcription start site region 123963
Tssr123964 13 105299748 to 105299775 27 - TSS region transcription start site region 123964
Tssr120944 13 105308060 to 105308086 26 + TSS region transcription start site region 120944
Gm41049 13 105311429 to 105324918 13489 + lncRNA gene predicted gene, 41049
Gm31130 13 105409655 to 105432605 22950 + lncRNA gene predicted gene, 31130
Htr1a 13 105443693 to 105448133 4440 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 1A
Cpgi6066 13 105443922 to 105445297 1375 CpG island CpG island 6066
Tssr120945 13 105444261 to 105444271 10 + TSS region transcription start site region 120945
Gm41050 13 105486672 to 105502918 16246 + lncRNA gene predicted gene, 41050