Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:103127959-104058113

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mast4 13 102732486 to 103334497 602011 - protein coding gene microtubule associated serine/threonine kinase family member 4
Tssr123872 13 103129620 to 103129623 3 - TSS region transcription start site region 123872
Gm6211 13 103159819 to 103160933 1114 - pseudogene predicted gene 6211
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Fbtq6 13 103205109 to 103205250 141 QTL femoral bone trait QTL 6
D13Mit226 13 103205109 to 103205250 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 226
Tssr123873 13 103300949 to 103300953 4 - TSS region transcription start site region 123873
Tssr120897 13 103332542 to 103332550 8 + TSS region transcription start site region 120897
Tssr120898 13 103332581 to 103332589 8 + TSS region transcription start site region 120898
Tssr120899 13 103332600 to 103332608 8 + TSS region transcription start site region 120899
Cpgi6053 13 103333288 to 103335018 1730 CpG island CpG island 6053
Tssr123874 13 103334429 to 103334500 71 - TSS region transcription start site region 123874
Tssr123875 13 103335821 to 103335826 5 - TSS region transcription start site region 123875
Tssr123876 13 103335942 to 103335954 12 - TSS region transcription start site region 123876
Tssr123877 13 103335961 to 103335968 7 - TSS region transcription start site region 123877
Tssr120900 13 103344880 to 103344881 1 + TSS region transcription start site region 120900
Gm5454 13 103356252 to 103357704 1452 + pseudogene predicted gene 5454
Tssr120901 13 103356401 to 103356410 9 + TSS region transcription start site region 120901
n-R5s56 13 103396202 to 103396306 104 + rRNA gene nuclear encoded rRNA 5S 56
Tssr120902 13 103397067 to 103397069 2 + TSS region transcription start site region 120902
Gm16416 13 103397109 to 103397591 482 + pseudogene predicted gene 16416
Gm24441 13 103420802 to 103421082 280 - unclassified non-coding RNA gene predicted gene, 24441
Gm41079 13 103430877 to 103467279 36402 - lncRNA gene predicted gene, 41079
Tssr123878 13 103467239 to 103467265 26 - TSS region transcription start site region 123878
Gm41047 13 103507258 to 103520175 12917 + lncRNA gene predicted gene, 41047
D13Dcr15 13 103559660 to 103559755 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 15
Gm46398 13 103562494 to 103591359 28865 - lncRNA gene predicted gene, 46398
Gm30551 13 103591395 to 103707633 116238 - lincRNA gene predicted gene, 30551
Cpgi6054 13 103592959 to 103593113 154 CpG island CpG island 6054
Gm24870 13 103641926 to 103642032 106 + snRNA gene predicted gene, 24870
Gm6080 13 103657929 to 103658571 642 + pseudogene predicted gene 6080
Srek1 13 103739348 to 103774608 35260 - protein coding gene splicing regulatory glutamine/lysine-rich protein 1
Tssr123879 13 103753124 to 103753148 24 - TSS region transcription start site region 123879
Tssr123880 13 103758257 to 103758281 24 - TSS region transcription start site region 123880
Tssr123881 13 103764502 to 103764505 3 - TSS region transcription start site region 123881
Tssr123882 13 103768455 to 103768458 3 - TSS region transcription start site region 123882
Cpgi6055 13 103773788 to 103774913 1125 CpG island CpG island 6055
Tssr123883 13 103773924 to 103773926 2 - TSS region transcription start site region 123883
Tssr123884 13 103774466 to 103774572 106 - TSS region transcription start site region 123884
Tssr123885 13 103774575 to 103774644 69 - TSS region transcription start site region 123885
Tssr120903 13 103774646 to 103774663 17 + TSS region transcription start site region 120903
Tssr120904 13 103774667 to 103774678 11 + TSS region transcription start site region 120904
Erbin 13 103818787 to 103920514 101727 - protein coding gene Erbb2 interacting protein
Tssr123886 13 103845546 to 103845564 18 - TSS region transcription start site region 123886
Tssr123887 13 103845589 to 103845601 12 - TSS region transcription start site region 123887
Tssr123888 13 103850778 to 103850795 17 - TSS region transcription start site region 123888
Tssr123889 13 103870294 to 103870301 7 - TSS region transcription start site region 123889
Gm2590 13 103897984 to 103903204 5220 unclassified gene predicted gene 2590
Tssr123890 13 103899572 to 103899599 27 - TSS region transcription start site region 123890
Tssr123891 13 103907746 to 103907750 4 - TSS region transcription start site region 123891
Tssr123892 13 103909839 to 103909841 2 - TSS region transcription start site region 123892
Tssr123893 13 103911850 to 103911854 4 - TSS region transcription start site region 123893
Tssr120905 13 103919434 to 103919455 21 + TSS region transcription start site region 120905
Tssr120906 13 103919625 to 103919652 27 + TSS region transcription start site region 120906
Cpgi6056 13 103919634 to 103922059 2425 CpG island CpG island 6056
D130037M23Rik 13 103920266 to 103923396 3130 + protein coding gene RIKEN cDNA D130037M23 gene
Tssr123894 13 103920309 to 103920314 5 - TSS region transcription start site region 123894
Tssr123895 13 103920340 to 103920367 27 - TSS region transcription start site region 123895
Tssr123896 13 103920373 to 103920423 50 - TSS region transcription start site region 123896
Tssr123897 13 103920431 to 103920484 53 - TSS region transcription start site region 123897
Tssr123898 13 103920486 to 103920497 11 - TSS region transcription start site region 123898
Tssr123899 13 103920508 to 103920572 64 - TSS region transcription start site region 123899
Tssr123900 13 103920576 to 103920590 14 - TSS region transcription start site region 123900
Tssr123901 13 103921013 to 103921053 40 - TSS region transcription start site region 123901
Tssr123902 13 103921056 to 103921084 28 - TSS region transcription start site region 123902
Tssr123903 13 103921101 to 103921116 15 - TSS region transcription start site region 123903
Tssr123904 13 103921119 to 103921179 60 - TSS region transcription start site region 123904
Tssr123905 13 103921478 to 103921491 13 - TSS region transcription start site region 123905
Tssr123906 13 103921531 to 103921687 156 - TSS region transcription start site region 123906
Tssr123907 13 103921787 to 103921807 20 - TSS region transcription start site region 123907
Tssr123908 13 103921811 to 103921837 26 - TSS region transcription start site region 123908
Tssr123909 13 103921902 to 103921914 12 - TSS region transcription start site region 123909
Gm47849 13 103945928 to 103970124 24196 - lincRNA gene predicted gene, 47849
D13Mit211 13 103960298 to 103960415 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 211
Gm47851 13 103976312 to 103978330 2018 - lincRNA gene predicted gene, 47851
Tssr4157 13 103978052 to 103978059 7 + TSS region transcription start site region 4157
Tssr4158 13 103992847 to 103992848 1 - TSS region transcription start site region 4158
Nln 13 104023057 to 104109614 86557 - protein coding gene neurolysin (metallopeptidase M3 family)
Tssr123910 13 104036503 to 104036514 11 - TSS region transcription start site region 123910
Tssr123911 13 104036561 to 104036603 42 - TSS region transcription start site region 123911
Gm30967 13 104037491 to 104046225 8734 + lncRNA gene predicted gene, 30967
Tssr123912 13 104037625 to 104037641 16 - TSS region transcription start site region 123912