Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:103082494-104071359

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mast4 13 102732486 to 103334497 602011 - protein coding gene microtubule associated serine/threonine kinase family member 4
Cpgi6052 13 103096652 to 103097155 503 CpG island CpG island 6052
Tssr123871 13 103096818 to 103096869 51 - TSS region transcription start site region 123871
Gm30050 13 103097060 to 103100912 3852 + lncRNA gene predicted gene, 30050
Tssr123872 13 103129620 to 103129623 3 - TSS region transcription start site region 123872
Gm6211 13 103159819 to 103160933 1114 - pseudogene predicted gene 6211
D13Mit226 13 103205109 to 103205250 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 226
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Fbtq6 13 103205109 to 103205250 141 QTL femoral bone trait QTL 6
Tssr123873 13 103300949 to 103300953 4 - TSS region transcription start site region 123873
Tssr120897 13 103332542 to 103332550 8 + TSS region transcription start site region 120897
Tssr120898 13 103332581 to 103332589 8 + TSS region transcription start site region 120898
Tssr120899 13 103332600 to 103332608 8 + TSS region transcription start site region 120899
Cpgi6053 13 103333288 to 103335018 1730 CpG island CpG island 6053
Tssr123874 13 103334429 to 103334500 71 - TSS region transcription start site region 123874
Tssr123875 13 103335821 to 103335826 5 - TSS region transcription start site region 123875
Tssr123876 13 103335942 to 103335954 12 - TSS region transcription start site region 123876
Tssr123877 13 103335961 to 103335968 7 - TSS region transcription start site region 123877
Tssr120900 13 103344880 to 103344881 1 + TSS region transcription start site region 120900
Gm5454 13 103356252 to 103357704 1452 + pseudogene predicted gene 5454
Tssr120901 13 103356401 to 103356410 9 + TSS region transcription start site region 120901
n-R5s56 13 103396202 to 103396306 104 + rRNA gene nuclear encoded rRNA 5S 56
Tssr120902 13 103397067 to 103397069 2 + TSS region transcription start site region 120902
Gm16416 13 103397109 to 103397591 482 + pseudogene predicted gene 16416
Gm24441 13 103420802 to 103421082 280 - unclassified non-coding RNA gene predicted gene, 24441
Gm41079 13 103430877 to 103467279 36402 - lncRNA gene predicted gene, 41079
Tssr123878 13 103467239 to 103467265 26 - TSS region transcription start site region 123878
Gm41047 13 103507258 to 103520175 12917 + lncRNA gene predicted gene, 41047
D13Dcr15 13 103559660 to 103559755 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 15
Gm46398 13 103562494 to 103591359 28865 - lncRNA gene predicted gene, 46398
Gm30551 13 103591395 to 103707633 116238 - lincRNA gene predicted gene, 30551
Cpgi6054 13 103592959 to 103593113 154 CpG island CpG island 6054
Gm24870 13 103641926 to 103642032 106 + snRNA gene predicted gene, 24870
Gm6080 13 103657929 to 103658571 642 + pseudogene predicted gene 6080
Srek1 13 103739348 to 103774608 35260 - protein coding gene splicing regulatory glutamine/lysine-rich protein 1
Tssr123879 13 103753124 to 103753148 24 - TSS region transcription start site region 123879
Tssr123880 13 103758257 to 103758281 24 - TSS region transcription start site region 123880
Tssr123881 13 103764502 to 103764505 3 - TSS region transcription start site region 123881
Tssr123882 13 103768455 to 103768458 3 - TSS region transcription start site region 123882
Cpgi6055 13 103773788 to 103774913 1125 CpG island CpG island 6055
Tssr123883 13 103773924 to 103773926 2 - TSS region transcription start site region 123883
Tssr123884 13 103774466 to 103774572 106 - TSS region transcription start site region 123884
Tssr123885 13 103774575 to 103774644 69 - TSS region transcription start site region 123885
Tssr120903 13 103774646 to 103774663 17 + TSS region transcription start site region 120903
Tssr120904 13 103774667 to 103774678 11 + TSS region transcription start site region 120904
Erbin 13 103818787 to 103920514 101727 - protein coding gene Erbb2 interacting protein
Tssr123886 13 103845546 to 103845564 18 - TSS region transcription start site region 123886
Tssr123887 13 103845589 to 103845601 12 - TSS region transcription start site region 123887
Tssr123888 13 103850778 to 103850795 17 - TSS region transcription start site region 123888
Tssr123889 13 103870294 to 103870301 7 - TSS region transcription start site region 123889
Gm2590 13 103897984 to 103903204 5220 unclassified gene predicted gene 2590
Tssr123890 13 103899572 to 103899599 27 - TSS region transcription start site region 123890
Tssr123891 13 103907746 to 103907750 4 - TSS region transcription start site region 123891
Tssr123892 13 103909839 to 103909841 2 - TSS region transcription start site region 123892
Tssr123893 13 103911850 to 103911854 4 - TSS region transcription start site region 123893
Tssr120905 13 103919434 to 103919455 21 + TSS region transcription start site region 120905
Tssr120906 13 103919625 to 103919652 27 + TSS region transcription start site region 120906
Cpgi6056 13 103919634 to 103922059 2425 CpG island CpG island 6056
D130037M23Rik 13 103920266 to 103923396 3130 + protein coding gene RIKEN cDNA D130037M23 gene
Tssr123894 13 103920309 to 103920314 5 - TSS region transcription start site region 123894
Tssr123895 13 103920340 to 103920367 27 - TSS region transcription start site region 123895
Tssr123896 13 103920373 to 103920423 50 - TSS region transcription start site region 123896
Tssr123897 13 103920431 to 103920484 53 - TSS region transcription start site region 123897
Tssr123898 13 103920486 to 103920497 11 - TSS region transcription start site region 123898
Tssr123899 13 103920508 to 103920572 64 - TSS region transcription start site region 123899
Tssr123900 13 103920576 to 103920590 14 - TSS region transcription start site region 123900
Tssr123901 13 103921013 to 103921053 40 - TSS region transcription start site region 123901
Tssr123902 13 103921056 to 103921084 28 - TSS region transcription start site region 123902
Tssr123903 13 103921101 to 103921116 15 - TSS region transcription start site region 123903
Tssr123904 13 103921119 to 103921179 60 - TSS region transcription start site region 123904
Tssr123905 13 103921478 to 103921491 13 - TSS region transcription start site region 123905
Tssr123906 13 103921531 to 103921687 156 - TSS region transcription start site region 123906
Tssr123907 13 103921787 to 103921807 20 - TSS region transcription start site region 123907
Tssr123908 13 103921811 to 103921837 26 - TSS region transcription start site region 123908
Tssr123909 13 103921902 to 103921914 12 - TSS region transcription start site region 123909
Gm47849 13 103945928 to 103970124 24196 - lincRNA gene predicted gene, 47849
D13Mit211 13 103960298 to 103960415 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 211
Gm47851 13 103976312 to 103978330 2018 - lincRNA gene predicted gene, 47851
Tssr4157 13 103978052 to 103978059 7 + TSS region transcription start site region 4157
Tssr4158 13 103992847 to 103992848 1 - TSS region transcription start site region 4158
Nln 13 104023057 to 104109614 86557 - protein coding gene neurolysin (metallopeptidase M3 family)
Tssr123910 13 104036503 to 104036514 11 - TSS region transcription start site region 123910
Tssr123911 13 104036561 to 104036603 42 - TSS region transcription start site region 123911
Gm30967 13 104037491 to 104046225 8734 + lncRNA gene predicted gene, 30967
Tssr123912 13 104037625 to 104037641 16 - TSS region transcription start site region 123912