Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:103042106-107122309

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273 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mast4 13 102732486 to 103334497 602011 - protein coding gene microtubule associated serine/threonine kinase family member 4
Tssr123870 13 103047161 to 103047162 1 - TSS region transcription start site region 123870
D13Mit234 13 103061024 to 103061108 84 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 234
Cpgi6052 13 103096652 to 103097155 503 CpG island CpG island 6052
Tssr123871 13 103096818 to 103096869 51 - TSS region transcription start site region 123871
Gm30050 13 103097060 to 103100912 3852 + lncRNA gene predicted gene, 30050
Tssr123872 13 103129620 to 103129623 3 - TSS region transcription start site region 123872
Gm6211 13 103159819 to 103160933 1114 - pseudogene predicted gene 6211
Fbtq6 13 103205109 to 103205250 141 QTL femoral bone trait QTL 6
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
D13Mit226 13 103205109 to 103205250 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 226
Tssr123873 13 103300949 to 103300953 4 - TSS region transcription start site region 123873
Tssr120897 13 103332542 to 103332550 8 + TSS region transcription start site region 120897
Tssr120898 13 103332581 to 103332589 8 + TSS region transcription start site region 120898
Tssr120899 13 103332600 to 103332608 8 + TSS region transcription start site region 120899
Cpgi6053 13 103333288 to 103335018 1730 CpG island CpG island 6053
Tssr123874 13 103334429 to 103334500 71 - TSS region transcription start site region 123874
Tssr123875 13 103335821 to 103335826 5 - TSS region transcription start site region 123875
Tssr123876 13 103335942 to 103335954 12 - TSS region transcription start site region 123876
Tssr123877 13 103335961 to 103335968 7 - TSS region transcription start site region 123877
Tssr120900 13 103344880 to 103344881 1 + TSS region transcription start site region 120900
Gm5454 13 103356252 to 103357704 1452 + pseudogene predicted gene 5454
Tssr120901 13 103356401 to 103356410 9 + TSS region transcription start site region 120901
n-R5s56 13 103396202 to 103396306 104 + rRNA gene nuclear encoded rRNA 5S 56
Tssr120902 13 103397067 to 103397069 2 + TSS region transcription start site region 120902
Gm16416 13 103397109 to 103397591 482 + pseudogene predicted gene 16416
Gm24441 13 103420802 to 103421082 280 - unclassified non-coding RNA gene predicted gene, 24441
Gm41079 13 103430877 to 103467279 36402 - lncRNA gene predicted gene, 41079
Tssr123878 13 103467239 to 103467265 26 - TSS region transcription start site region 123878
Gm41047 13 103507258 to 103520175 12917 + lncRNA gene predicted gene, 41047
D13Dcr15 13 103559660 to 103559755 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 15
Gm46398 13 103562494 to 103591359 28865 - lncRNA gene predicted gene, 46398
Gm30551 13 103591395 to 103707633 116238 - lincRNA gene predicted gene, 30551
Cpgi6054 13 103592959 to 103593113 154 CpG island CpG island 6054
Gm24870 13 103641926 to 103642032 106 + snRNA gene predicted gene, 24870
Gm6080 13 103657929 to 103658571 642 + pseudogene predicted gene 6080
Srek1 13 103739348 to 103774608 35260 - protein coding gene splicing regulatory glutamine/lysine-rich protein 1
Tssr123879 13 103753124 to 103753148 24 - TSS region transcription start site region 123879
Tssr123880 13 103758257 to 103758281 24 - TSS region transcription start site region 123880
Tssr123881 13 103764502 to 103764505 3 - TSS region transcription start site region 123881
Tssr123882 13 103768455 to 103768458 3 - TSS region transcription start site region 123882
Cpgi6055 13 103773788 to 103774913 1125 CpG island CpG island 6055
Tssr123883 13 103773924 to 103773926 2 - TSS region transcription start site region 123883
Tssr123884 13 103774466 to 103774572 106 - TSS region transcription start site region 123884
Tssr123885 13 103774575 to 103774644 69 - TSS region transcription start site region 123885
Tssr120903 13 103774646 to 103774663 17 + TSS region transcription start site region 120903
Tssr120904 13 103774667 to 103774678 11 + TSS region transcription start site region 120904
Erbin 13 103818787 to 103920514 101727 - protein coding gene Erbb2 interacting protein
Tssr123886 13 103845546 to 103845564 18 - TSS region transcription start site region 123886
Tssr123887 13 103845589 to 103845601 12 - TSS region transcription start site region 123887
Tssr123888 13 103850778 to 103850795 17 - TSS region transcription start site region 123888
Tssr123889 13 103870294 to 103870301 7 - TSS region transcription start site region 123889
Gm2590 13 103897984 to 103903204 5220 unclassified gene predicted gene 2590
Tssr123890 13 103899572 to 103899599 27 - TSS region transcription start site region 123890
Tssr123891 13 103907746 to 103907750 4 - TSS region transcription start site region 123891
Tssr123892 13 103909839 to 103909841 2 - TSS region transcription start site region 123892
Tssr123893 13 103911850 to 103911854 4 - TSS region transcription start site region 123893
Tssr120905 13 103919434 to 103919455 21 + TSS region transcription start site region 120905
Tssr120906 13 103919625 to 103919652 27 + TSS region transcription start site region 120906
Cpgi6056 13 103919634 to 103922059 2425 CpG island CpG island 6056
D130037M23Rik 13 103920266 to 103923396 3130 + protein coding gene RIKEN cDNA D130037M23 gene
Tssr123894 13 103920309 to 103920314 5 - TSS region transcription start site region 123894
Tssr123895 13 103920340 to 103920367 27 - TSS region transcription start site region 123895
Tssr123896 13 103920373 to 103920423 50 - TSS region transcription start site region 123896
Tssr123897 13 103920431 to 103920484 53 - TSS region transcription start site region 123897
Tssr123898 13 103920486 to 103920497 11 - TSS region transcription start site region 123898
Tssr123899 13 103920508 to 103920572 64 - TSS region transcription start site region 123899
Tssr123900 13 103920576 to 103920590 14 - TSS region transcription start site region 123900
Tssr123901 13 103921013 to 103921053 40 - TSS region transcription start site region 123901
Tssr123902 13 103921056 to 103921084 28 - TSS region transcription start site region 123902
Tssr123903 13 103921101 to 103921116 15 - TSS region transcription start site region 123903
Tssr123904 13 103921119 to 103921179 60 - TSS region transcription start site region 123904
Tssr123905 13 103921478 to 103921491 13 - TSS region transcription start site region 123905
Tssr123906 13 103921531 to 103921687 156 - TSS region transcription start site region 123906
Tssr123907 13 103921787 to 103921807 20 - TSS region transcription start site region 123907
Tssr123908 13 103921811 to 103921837 26 - TSS region transcription start site region 123908
Tssr123909 13 103921902 to 103921914 12 - TSS region transcription start site region 123909
Gm47849 13 103945928 to 103970124 24196 - lincRNA gene predicted gene, 47849
D13Mit211 13 103960298 to 103960415 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 211
Gm47851 13 103976312 to 103978330 2018 - lincRNA gene predicted gene, 47851
Tssr4157 13 103978052 to 103978059 7 + TSS region transcription start site region 4157
Tssr4158 13 103992847 to 103992848 1 - TSS region transcription start site region 4158
Nln 13 104023057 to 104109614 86557 - protein coding gene neurolysin (metallopeptidase M3 family)
Tssr123910 13 104036503 to 104036514 11 - TSS region transcription start site region 123910
Tssr123911 13 104036561 to 104036603 42 - TSS region transcription start site region 123911
Gm30967 13 104037491 to 104046225 8734 + lncRNA gene predicted gene, 30967
Tssr123912 13 104037625 to 104037641 16 - TSS region transcription start site region 123912
Cpgi6057 13 104108976 to 104110162 1186 CpG island CpG island 6057
Tssr123913 13 104109513 to 104109574 61 - TSS region transcription start site region 123913
Tssr123914 13 104109576 to 104109619 43 - TSS region transcription start site region 123914
Tssr123915 13 104109620 to 104109640 20 - TSS region transcription start site region 123915
Tssr120907 13 104109737 to 104109746 9 + TSS region transcription start site region 120907
Sgtb 13 104109741 to 104141735 31994 + protein coding gene small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
Tssr120908 13 104109752 to 104109782 30 + TSS region transcription start site region 120908
Trappc13 13 104142149 to 104178469 36320 - protein coding gene trafficking protein particle complex 13
Tssr120909 13 104157175 to 104157180 5 + TSS region transcription start site region 120909
Cpgi6058 13 104177884 to 104179222 1338 CpG island CpG island 6058
Tssr4159 13 104178144 to 104178156 12 - TSS region transcription start site region 4159
Tssr123916 13 104178168 to 104178181 13 - TSS region transcription start site region 123916
Tssr123917 13 104178399 to 104178480 81 - TSS region transcription start site region 123917
Trim23 13 104178797 to 104203372 24575 + protein coding gene tripartite motif-containing 23
Tssr120910 13 104178798 to 104178872 74 + TSS region transcription start site region 120910
Ppwd1 13 104205124 to 104228843 23719 - protein coding gene peptidylprolyl isomerase domain and WD repeat containing 1
Tssr123918 13 104205341 to 104205345 4 - TSS region transcription start site region 123918
Cpgi6059 13 104228384 to 104229295 911 CpG island CpG island 6059
Cenpk 13 104228611 to 104249622 21011 + protein coding gene centromere protein K
Tssr123919 13 104228802 to 104228828 26 - TSS region transcription start site region 123919
Tssr123920 13 104228833 to 104228849 16 - TSS region transcription start site region 123920
Tssr120911 13 104228929 to 104228982 53 + TSS region transcription start site region 120911
Tssr120912 13 104228983 to 104228990 7 + TSS region transcription start site region 120912
Tssr120913 13 104228994 to 104229005 11 + TSS region transcription start site region 120913
Tssr4160 13 104229007 to 104229012 5 + TSS region transcription start site region 4160
Tssr120914 13 104229366 to 104229386 20 + TSS region transcription start site region 120914
Tssr120915 13 104287033 to 104287062 29 + TSS region transcription start site region 120915
Tssr120916 13 104287089 to 104287107 18 + TSS region transcription start site region 120916
Tssr120917 13 104287118 to 104287132 14 + TSS region transcription start site region 120917
Tssr120918 13 104287136 to 104287147 11 + TSS region transcription start site region 120918
Tssr120919 13 104287357 to 104287379 22 + TSS region transcription start site region 120919
Tssr120920 13 104287452 to 104287466 14 + TSS region transcription start site region 120920
Tssr120921 13 104287491 to 104287498 7 + TSS region transcription start site region 120921
Tssr120922 13 104287508 to 104287524 16 + TSS region transcription start site region 120922
Adamts6 13 104287835 to 104496695 208860 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
Tssr120923 13 104287855 to 104287882 27 + TSS region transcription start site region 120923
Tssr120924 13 104287902 to 104287923 21 + TSS region transcription start site region 120924
Tssr120925 13 104287932 to 104287962 30 + TSS region transcription start site region 120925
Tssr120926 13 104296463 to 104296469 6 + TSS region transcription start site region 120926
Tssr4161 13 104377053 to 104377057 4 + TSS region transcription start site region 4161
Tssr120927 13 104398386 to 104398388 2 + TSS region transcription start site region 120927
Tssr120928 13 104430896 to 104430900 4 + TSS region transcription start site region 120928
Gm8680 13 104430931 to 104432507 1576 - pseudogene predicted gene 8680
Tssr123921 13 104431403 to 104431404 1 - TSS region transcription start site region 123921
D13Mit51 13 104469495 to 104469640 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 51
Tssr123922 13 104610625 to 104610636 11 - TSS region transcription start site region 123922
Tssr120929 13 104620199 to 104620204 5 + TSS region transcription start site region 120929
Tssr123923 13 104621645 to 104621652 7 - TSS region transcription start site region 123923
Tssr120930 13 104622701 to 104622718 17 + TSS region transcription start site region 120930
Tssr123924 13 104623318 to 104623332 14 - TSS region transcription start site region 123924
Tssr123925 13 104623336 to 104623352 16 - TSS region transcription start site region 123925
Tssr120931 13 104623457 to 104623460 3 + TSS region transcription start site region 120931
Cwc27 13 104631322 to 104816969 185647 - protein coding gene CWC27 spliceosome-associated protein
Cpgi6060 13 104660521 to 104660977 456 CpG island CpG island 6060
Tssr120932 13 104672439 to 104672440 1 + TSS region transcription start site region 120932
Tssr120933 13 104684907 to 104684920 13 + TSS region transcription start site region 120933
2610204G07Rik 13 104684931 to 104694994 10063 + antisense lncRNA gene RIKEN cDNA 2610204G07 gene
Tssr120934 13 104816545 to 104816569 24 + TSS region transcription start site region 120934
Tssr120935 13 104816582 to 104816590 8 + TSS region transcription start site region 120935
Cpgi6061 13 104816611 to 104817451 840 CpG island CpG island 6061
Tssr123926 13 104816868 to 104816886 18 - TSS region transcription start site region 123926
Tssr123927 13 104816889 to 104816905 16 - TSS region transcription start site region 123927
Tssr123928 13 104816908 to 104816951 43 - TSS region transcription start site region 123928
Tssr123929 13 104817124 to 104817153 29 - TSS region transcription start site region 123929
Srek1ip1 13 104817170 to 104838676 21506 + protein coding gene splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
Tssr120936 13 104817171 to 104817223 52 + TSS region transcription start site region 120936
Tssr120937 13 104817227 to 104817247 20 + TSS region transcription start site region 120937
Shisal2b 13 104845283 to 104863893 18610 - protein coding gene shisa like 2B
Tssr120938 13 104849604 to 104849615 11 + TSS region transcription start site region 120938
Tssr120939 13 104849625 to 104849637 12 + TSS region transcription start site region 120939
Tssr120940 13 104849645 to 104849654 9 + TSS region transcription start site region 120940
Cpgi6062 13 104863563 to 104864013 450 CpG island CpG island 6062
Tssr123930 13 104863883 to 104863894 11 - TSS region transcription start site region 123930
Tssr123931 13 104863913 to 104863921 8 - TSS region transcription start site region 123931
Gm41048 13 104914755 to 104921688 6933 + lncRNA gene predicted gene, 41048
Tssr120941 13 104918670 to 104918673 3 + TSS region transcription start site region 120941
Gm4938 13 104918780 to 104919176 396 + pseudogene predicted pseudogene 4938
Rgs7bp 13 104945904 to 105054930 109026 - protein coding gene regulator of G-protein signalling 7 binding protein
Tssr123932 13 104951432 to 104951451 19 - TSS region transcription start site region 123932
Tssr123933 13 104975980 to 104975982 2 - TSS region transcription start site region 123933
Cpgi6063 13 105053639 to 105055040 1401 CpG island CpG island 6063
Tssr123934 13 105054246 to 105054258 12 - TSS region transcription start site region 123934
Tssr123935 13 105054369 to 105054382 13 - TSS region transcription start site region 123935
Tssr123936 13 105054439 to 105054562 123 - TSS region transcription start site region 123936
Tssr123937 13 105054580 to 105054630 50 - TSS region transcription start site region 123937
Tssr123938 13 105054782 to 105054792 10 - TSS region transcription start site region 123938
Tssr123939 13 105054797 to 105054821 24 - TSS region transcription start site region 123939
Tssr123940 13 105054826 to 105054847 21 - TSS region transcription start site region 123940
Tssr123941 13 105054849 to 105054864 15 - TSS region transcription start site region 123941
Tssr123942 13 105054895 to 105054906 11 - TSS region transcription start site region 123942
Cpgi6064 13 105082106 to 105082309 203 CpG island CpG island 6064
Tssr120942 13 105082117 to 105082127 10 + TSS region transcription start site region 120942
4933425L06Rik 13 105082122 to 105121782 39660 + protein coding gene RIKEN cDNA 4933425L06 gene
Rnf180 13 105130567 to 105294818 164251 - protein coding gene ring finger protein 180
D13Mit270 13 105184838 to 105184984 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 270
Gm25631 13 105223269 to 105223398 129 - snoRNA gene predicted gene, 25631
Tssr123943 13 105242634 to 105242649 15 - TSS region transcription start site region 123943
Tssr123944 13 105242652 to 105242666 14 - TSS region transcription start site region 123944
Tssr123945 13 105242797 to 105242810 13 - TSS region transcription start site region 123945
Tssr123946 13 105249686 to 105249708 22 - TSS region transcription start site region 123946
Tssr123947 13 105249709 to 105249750 41 - TSS region transcription start site region 123947
Tssr123948 13 105249801 to 105249816 15 - TSS region transcription start site region 123948
Tssr123949 13 105250438 to 105250447 9 - TSS region transcription start site region 123949
Tssr123950 13 105250449 to 105250479 30 - TSS region transcription start site region 123950
Tssr123951 13 105250490 to 105250499 9 - TSS region transcription start site region 123951
D13Mit73 13 105285511 to 105285678 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 73
Sgp5 13 105285678 to 56322643 -48963035 QTL serum gp70 production 5
Tssr120943 13 105291621 to 105291626 5 + TSS region transcription start site region 120943
Tssr123952 13 105291914 to 105291938 24 - TSS region transcription start site region 123952
Tssr123953 13 105291952 to 105291974 22 - TSS region transcription start site region 123953
Tssr123954 13 105293004 to 105293015 11 - TSS region transcription start site region 123954
Cpgi6065 13 105293725 to 105294808 1083 CpG island CpG island 6065
Tssr123955 13 105294290 to 105294302 12 - TSS region transcription start site region 123955