Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:101990818-102830821

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41044 13 101998661 to 102014347 15686 - lncRNA gene predicted gene, 41044
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Tssr123850 13 102014314 to 102014331 17 - TSS region transcription start site region 123850
Tssr120871 13 102036207 to 102036214 7 + TSS region transcription start site region 120871
Gm38133 13 102114117 to 102116035 1918 - unclassified gene predicted gene, 38133
Gm25808 13 102228669 to 102228952 283 + unclassified non-coding RNA gene predicted gene, 25808
Tssr120872 13 102295285 to 102295292 7 + TSS region transcription start site region 120872
Cpgi6049 13 102295489 to 102295642 153 CpG island CpG island 6049
Gm46397 13 102342557 to 102351981 9424 - lncRNA gene predicted gene, 46397
Tssr120873 13 102349691 to 102349724 33 + TSS region transcription start site region 120873
Gm36703 13 102349730 to 102356684 6954 + lncRNA gene predicted gene, 36703
Gm47008 13 102366891 to 102367152 261 - pseudogene predicted gene, 47008
Tssr120874 13 102410818 to 102410821 3 + TSS region transcription start site region 120874
Gm36921 13 102452532 to 102454304 1772 + lncRNA gene predicted gene, 36921
Gm41045 13 102469333 to 102479674 10341 - lncRNA gene predicted gene, 41045
Gm29870 13 102482194 to 102483584 1390 - lncRNA gene predicted gene, 29870
Gm29927 13 102563187 to 102590285 27098 - lincRNA gene predicted gene, 29927
Gm47014 13 102604533 to 102606903 2370 + pseudogene predicted gene, 47014
Gm41046 13 102661408 to 102666459 5051 - lncRNA gene predicted gene, 41046
Cpgi6050 13 102666036 to 102666298 262 CpG island CpG island 6050
Tssr123851 13 102666454 to 102666467 13 - TSS region transcription start site region 123851
Tssr123852 13 102682606 to 102682642 36 - TSS region transcription start site region 123852
Tssr120875 13 102688394 to 102688429 35 + TSS region transcription start site region 120875
Tssr120876 13 102691965 to 102691971 6 + TSS region transcription start site region 120876
Tssr123853 13 102693375 to 102693381 6 - TSS region transcription start site region 123853
Tssr120877 13 102693522 to 102693586 64 + TSS region transcription start site region 120877
Cd180 13 102693558 to 102706631 13073 + protein coding gene CD180 antigen
Tssr120878 13 102693596 to 102693607 11 + TSS region transcription start site region 120878
Tssr120879 13 102693649 to 102693660 11 + TSS region transcription start site region 120879
Tssr120880 13 102698499 to 102698515 16 + TSS region transcription start site region 120880
D13Mit47 13 102699171 to 102699306 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 47
Tssr120881 13 102701274 to 102701296 22 + TSS region transcription start site region 120881
Tssr120882 13 102706080 to 102706089 9 + TSS region transcription start site region 120882
Tssr120883 13 102706289 to 102706293 4 + TSS region transcription start site region 120883
Tssr120884 13 102706542 to 102706553 11 + TSS region transcription start site region 120884
Tssr123854 13 102706715 to 102706736 21 - TSS region transcription start site region 123854
Tssr120885 13 102706846 to 102706849 3 + TSS region transcription start site region 120885
Tssr120886 13 102706899 to 102706912 13 + TSS region transcription start site region 120886
Tssr120887 13 102706925 to 102706938 13 + TSS region transcription start site region 120887
Tssr120888 13 102706943 to 102706950 7 + TSS region transcription start site region 120888
Tssr120889 13 102720434 to 102720471 37 + TSS region transcription start site region 120889
Tssr120890 13 102720784 to 102720788 4 + TSS region transcription start site region 120890
Tssr120891 13 102723249 to 102723253 4 + TSS region transcription start site region 120891
D13Mit112 13 102726891 to 102727104 213 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 112
D13Mit287 13 102731487 to 102731598 111 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 287
Mast4 13 102732486 to 103334497 602011 - protein coding gene microtubule associated serine/threonine kinase family member 4
Tssr120892 13 102733128 to 102733147 19 + TSS region transcription start site region 120892
Tssr120893 13 102733255 to 102733266 11 + TSS region transcription start site region 120893
Tssr120894 13 102733325 to 102733345 20 + TSS region transcription start site region 120894
Cpgi6051 13 102736833 to 102736989 156 CpG island CpG island 6051
Tssr120895 13 102741342 to 102741347 5 + TSS region transcription start site region 120895
D13Ertd776e 13 102744321 to 102744533 212 DNA segment DNA segment, Chr 13, ERATO Doi 776, expressed
Tssr120896 13 102760240 to 102760272 32 + TSS region transcription start site region 120896
1700099I09Rik 13 102760255 to 102761896 1641 + antisense lncRNA gene RIKEN cDNA 1700099I09 gene
Tssr4156 13 102762414 to 102762441 27 + TSS region transcription start site region 4156
Gm17160 13 102762435 to 102764785 2350 + antisense lncRNA gene predicted gene 17160
Tssr123855 13 102825172 to 102825176 4 - TSS region transcription start site region 123855