Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:101881408-103446459

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit71 13 101904040 to 101904155 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 71
Gm17832 13 101920411 to 101921235 824 + pseudogene predicted gene, 17832
Gm41044 13 101998661 to 102014347 15686 - lncRNA gene predicted gene, 41044
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Tssr123850 13 102014314 to 102014331 17 - TSS region transcription start site region 123850
Tssr120871 13 102036207 to 102036214 7 + TSS region transcription start site region 120871
Gm38133 13 102114117 to 102116035 1918 - unclassified gene predicted gene, 38133
Gm25808 13 102228669 to 102228952 283 + unclassified non-coding RNA gene predicted gene, 25808
Tssr120872 13 102295285 to 102295292 7 + TSS region transcription start site region 120872
Cpgi6049 13 102295489 to 102295642 153 CpG island CpG island 6049
Gm46397 13 102342557 to 102351981 9424 - lncRNA gene predicted gene, 46397
Tssr120873 13 102349691 to 102349724 33 + TSS region transcription start site region 120873
Gm36703 13 102349730 to 102356684 6954 + lncRNA gene predicted gene, 36703
Gm47008 13 102366891 to 102367152 261 - pseudogene predicted gene, 47008
Tssr120874 13 102410818 to 102410821 3 + TSS region transcription start site region 120874
Gm36921 13 102452532 to 102454304 1772 + lncRNA gene predicted gene, 36921
Gm41045 13 102469333 to 102479674 10341 - lncRNA gene predicted gene, 41045
Gm29870 13 102482194 to 102483584 1390 - lncRNA gene predicted gene, 29870
Gm29927 13 102563187 to 102590285 27098 - lincRNA gene predicted gene, 29927
Gm47014 13 102604533 to 102606903 2370 + pseudogene predicted gene, 47014
Gm41046 13 102661408 to 102666459 5051 - lncRNA gene predicted gene, 41046
Cpgi6050 13 102666036 to 102666298 262 CpG island CpG island 6050
Tssr123851 13 102666454 to 102666467 13 - TSS region transcription start site region 123851
Tssr123852 13 102682606 to 102682642 36 - TSS region transcription start site region 123852
Tssr120875 13 102688394 to 102688429 35 + TSS region transcription start site region 120875
Tssr120876 13 102691965 to 102691971 6 + TSS region transcription start site region 120876
Tssr123853 13 102693375 to 102693381 6 - TSS region transcription start site region 123853
Tssr120877 13 102693522 to 102693586 64 + TSS region transcription start site region 120877
Cd180 13 102693558 to 102706631 13073 + protein coding gene CD180 antigen
Tssr120878 13 102693596 to 102693607 11 + TSS region transcription start site region 120878
Tssr120879 13 102693649 to 102693660 11 + TSS region transcription start site region 120879
Tssr120880 13 102698499 to 102698515 16 + TSS region transcription start site region 120880
D13Mit47 13 102699171 to 102699306 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 47
Tssr120881 13 102701274 to 102701296 22 + TSS region transcription start site region 120881
Tssr120882 13 102706080 to 102706089 9 + TSS region transcription start site region 120882
Tssr120883 13 102706289 to 102706293 4 + TSS region transcription start site region 120883
Tssr120884 13 102706542 to 102706553 11 + TSS region transcription start site region 120884
Tssr123854 13 102706715 to 102706736 21 - TSS region transcription start site region 123854
Tssr120885 13 102706846 to 102706849 3 + TSS region transcription start site region 120885
Tssr120886 13 102706899 to 102706912 13 + TSS region transcription start site region 120886
Tssr120887 13 102706925 to 102706938 13 + TSS region transcription start site region 120887
Tssr120888 13 102706943 to 102706950 7 + TSS region transcription start site region 120888
Tssr120889 13 102720434 to 102720471 37 + TSS region transcription start site region 120889
Tssr120890 13 102720784 to 102720788 4 + TSS region transcription start site region 120890
Tssr120891 13 102723249 to 102723253 4 + TSS region transcription start site region 120891
D13Mit112 13 102726891 to 102727104 213 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 112
D13Mit287 13 102731487 to 102731598 111 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 287
Mast4 13 102732486 to 103334497 602011 - protein coding gene microtubule associated serine/threonine kinase family member 4
Tssr120892 13 102733128 to 102733147 19 + TSS region transcription start site region 120892
Tssr120893 13 102733255 to 102733266 11 + TSS region transcription start site region 120893
Tssr120894 13 102733325 to 102733345 20 + TSS region transcription start site region 120894
Cpgi6051 13 102736833 to 102736989 156 CpG island CpG island 6051
Tssr120895 13 102741342 to 102741347 5 + TSS region transcription start site region 120895
D13Ertd776e 13 102744321 to 102744533 212 DNA segment DNA segment, Chr 13, ERATO Doi 776, expressed
Tssr120896 13 102760240 to 102760272 32 + TSS region transcription start site region 120896
1700099I09Rik 13 102760255 to 102761896 1641 + antisense lncRNA gene RIKEN cDNA 1700099I09 gene
Tssr4156 13 102762414 to 102762441 27 + TSS region transcription start site region 4156
Gm17160 13 102762435 to 102764785 2350 + antisense lncRNA gene predicted gene 17160
Tssr123855 13 102825172 to 102825176 4 - TSS region transcription start site region 123855
Tssr123856 13 102843964 to 102843968 4 - TSS region transcription start site region 123856
D13Mit290 13 102848530 to 102848679 149 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 290
Tssr123857 13 102894996 to 102895031 35 - TSS region transcription start site region 123857
Tssr123858 13 102901897 to 102901899 2 - TSS region transcription start site region 123858
Tssr123859 13 102905804 to 102905814 10 - TSS region transcription start site region 123859
Tssr123860 13 102905900 to 102905916 16 - TSS region transcription start site region 123860
Tssr123861 13 102905950 to 102905961 11 - TSS region transcription start site region 123861
Tssr123862 13 102906015 to 102906038 23 - TSS region transcription start site region 123862
Tssr123863 13 102906046 to 102906111 65 - TSS region transcription start site region 123863
Tssr123864 13 102906994 to 102907000 6 - TSS region transcription start site region 123864
Gm30106 13 102912096 to 102957913 45817 + lncRNA gene predicted gene, 30106
Tssr123865 13 102958118 to 102958173 55 - TSS region transcription start site region 123865
Tssr123866 13 102958276 to 102958325 49 - TSS region transcription start site region 123866
Tssr123867 13 102969439 to 102969442 3 - TSS region transcription start site region 123867
Tssr123868 13 103006321 to 103006326 5 - TSS region transcription start site region 123868
Tssr123869 13 103038775 to 103038781 6 - TSS region transcription start site region 123869
Tssr123870 13 103047161 to 103047162 1 - TSS region transcription start site region 123870
D13Mit234 13 103061024 to 103061108 84 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 234
Cpgi6052 13 103096652 to 103097155 503 CpG island CpG island 6052
Tssr123871 13 103096818 to 103096869 51 - TSS region transcription start site region 123871
Gm30050 13 103097060 to 103100912 3852 + lncRNA gene predicted gene, 30050
Tssr123872 13 103129620 to 103129623 3 - TSS region transcription start site region 123872
Gm6211 13 103159819 to 103160933 1114 - pseudogene predicted gene 6211
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Fbtq6 13 103205109 to 103205250 141 QTL femoral bone trait QTL 6
D13Mit226 13 103205109 to 103205250 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 226
Tssr123873 13 103300949 to 103300953 4 - TSS region transcription start site region 123873
Tssr120897 13 103332542 to 103332550 8 + TSS region transcription start site region 120897
Tssr120898 13 103332581 to 103332589 8 + TSS region transcription start site region 120898
Tssr120899 13 103332600 to 103332608 8 + TSS region transcription start site region 120899
Cpgi6053 13 103333288 to 103335018 1730 CpG island CpG island 6053
Tssr123874 13 103334429 to 103334500 71 - TSS region transcription start site region 123874
Tssr123875 13 103335821 to 103335826 5 - TSS region transcription start site region 123875
Tssr123876 13 103335942 to 103335954 12 - TSS region transcription start site region 123876
Tssr123877 13 103335961 to 103335968 7 - TSS region transcription start site region 123877
Tssr120900 13 103344880 to 103344881 1 + TSS region transcription start site region 120900
Gm5454 13 103356252 to 103357704 1452 + pseudogene predicted gene 5454
Tssr120901 13 103356401 to 103356410 9 + TSS region transcription start site region 120901
n-R5s56 13 103396202 to 103396306 104 + rRNA gene nuclear encoded rRNA 5S 56
Tssr120902 13 103397067 to 103397069 2 + TSS region transcription start site region 120902
Gm16416 13 103397109 to 103397591 482 + pseudogene predicted gene 16416
Gm24441 13 103420802 to 103421082 280 - unclassified non-coding RNA gene predicted gene, 24441
Gm41079 13 103430877 to 103467279 36402 - lncRNA gene predicted gene, 41079