Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:100465736-102445739

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2h2 13 100460218 to 100492579 32361 - protein coding gene general transcription factor II H, polypeptide 2
Tssr123788 13 100467210 to 100467214 4 - TSS region transcription start site region 123788
Gm48452 13 100467932 to 100468187 255 + pseudogene predicted gene, 48452
Tssr123789 13 100490116 to 100490134 18 - TSS region transcription start site region 123789
Cpgi6032 13 100492039 to 100492769 730 CpG island CpG island 6032
Tssr123790 13 100492356 to 100492388 32 - TSS region transcription start site region 123790
Tssr123791 13 100492551 to 100492601 50 - TSS region transcription start site region 123791
Ocln 13 100496507 to 100552718 56211 - protein coding gene occludin
D13Die12 13 100497340 to 100497502 162 DNA segment DNA segment, Chr 13, Dietrich 12
Tssr123792 13 100497897 to 100497899 2 - TSS region transcription start site region 123792
Tssr123793 13 100515135 to 100515139 4 - TSS region transcription start site region 123793
D13Mit203.2 13 100515747 to 100515862 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203.2
D13Mit203 13 100515823 to 100515965 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203
D13Die42 13 100542404 to 100542604 200 DNA segment DNA segment, Chr 13, Dietrich 42
Cpgi6033 13 100551291 to 100553040 1749 CpG island CpG island 6033
Tssr123794 13 100552442 to 100552479 37 - TSS region transcription start site region 123794
Tssr123795 13 100552598 to 100552656 58 - TSS region transcription start site region 123795
Tssr123796 13 100552666 to 100552677 11 - TSS region transcription start site region 123796
Tssr123797 13 100552704 to 100552721 17 - TSS region transcription start site region 123797
Tssr123798 13 100553167 to 100553210 43 - TSS region transcription start site region 123798
D13Die43 13 100555212 to 100555499 287 DNA segment DNA segment, Chr 13, Dietrich 43
Gm48596 13 100557426 to 100560639 3213 + lincRNA gene predicted gene, 48596
Gm8847 13 100559402 to 100560032 630 - pseudogene predicted gene 8847
D13Die44 13 100567745 to 100568022 277 DNA segment DNA segment, Chr 13, Dietrich 44
Tssr120845 13 100576291 to 100576298 7 + TSS region transcription start site region 120845
D13Die45 13 100583858 to 100584003 145 DNA segment DNA segment, Chr 13, Dietrich 45
Marveld2 13 100595957 to 100616971 21014 - protein coding gene MARVEL (membrane-associating) domain containing 2
Gm24261 13 100604359 to 100604462 103 + snRNA gene predicted gene, 24261
Cpgi6034 13 100611908 to 100612098 190 CpG island CpG island 6034
Cpgi6035 13 100616228 to 100617139 911 CpG island CpG island 6035
Tssr123799 13 100616643 to 100616655 12 - TSS region transcription start site region 123799
Tssr123800 13 100616689 to 100616711 22 - TSS region transcription start site region 123800
Tssr123801 13 100616937 to 100616981 44 - TSS region transcription start site region 123801
Rad17 13 100617164 to 100651051 33887 - protein coding gene RAD17 checkpoint clamp loader component
Cpgi6036 13 100650609 to 100652016 1407 CpG island CpG island 6036
Tssr123802 13 100650981 to 100651085 104 - TSS region transcription start site region 123802
Tssr123803 13 100651253 to 100651264 11 - TSS region transcription start site region 123803
Tssr120846 13 100651307 to 100651310 3 + TSS region transcription start site region 120846
Tssr120847 13 100651328 to 100651397 69 + TSS region transcription start site region 120847
Ak6 13 100651343 to 100666415 15072 + protein coding gene adenylate kinase 6
Taf9 13 100651579 to 100656060 4481 + protein coding gene TATA-box binding protein associated factor 9
Tssr120848 13 100651590 to 100651601 11 + TSS region transcription start site region 120848
Tssr120849 13 100651610 to 100651631 21 + TSS region transcription start site region 120849
Tssr120850 13 100655282 to 100655313 31 + TSS region transcription start site region 120850
Cpgi6037 13 100669367 to 100670078 711 CpG island CpG island 6037
Tssr120851 13 100669698 to 100669754 56 + TSS region transcription start site region 120851
Ccdc125 13 100669717 to 100697240 27523 + protein coding gene coiled-coil domain containing 125
Tssr120852 13 100676103 to 100676136 33 + TSS region transcription start site region 120852
Tssr120853 13 100676140 to 100676150 10 + TSS region transcription start site region 120853
Tssr120854 13 100686195 to 100686199 4 + TSS region transcription start site region 120854
Cdk7 13 100702631 to 100730939 28308 - protein coding gene cyclin-dependent kinase 7
Tssr123804 13 100724544 to 100724547 3 - TSS region transcription start site region 123804
Tssr123805 13 100724880 to 100724883 3 - TSS region transcription start site region 123805
Cpgi6038 13 100730146 to 100730378 232 CpG island CpG island 6038
Cpgi6039 13 100730669 to 100731109 440 CpG island CpG island 6039
Tssr123806 13 100730839 to 100730962 123 - TSS region transcription start site region 123806
Tssr120855 13 100731013 to 100731077 64 + TSS region transcription start site region 120855
Mrps36 13 100735955 to 100744659 8704 - protein coding gene mitochondrial ribosomal protein S36
D13Mit195 13 100739552 to 100739748 196 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 195
Pbwg17 13 100739552 to 100739748 196 QTL postnatal body weight growth 17
Cpgi6040 13 100744069 to 100744769 700 CpG island CpG island 6040
Tssr123807 13 100744089 to 100744129 40 - TSS region transcription start site region 123807
Tssr120856 13 100744204 to 100744240 36 + TSS region transcription start site region 120856
Tssr123808 13 100744588 to 100744663 75 - TSS region transcription start site region 123808
Cenph 13 100759686 to 100775899 16213 - protein coding gene centromere protein H
D13Ertd37e 13 100763117 to 100763364 247 DNA segment DNA segment, Chr 13, ERATO Doi 37, expressed
Tssr120857 13 100770400 to 100770401 1 + TSS region transcription start site region 120857
Gm16335 13 100770464 to 100770772 308 + pseudogene predicted gene 16335
Cpgi6041 13 100775305 to 100776038 733 CpG island CpG island 6041
Tssr123809 13 100775803 to 100775843 40 - TSS region transcription start site region 123809
Tssr123810 13 100775844 to 100775893 49 - TSS region transcription start site region 123810
Ccnb1 13 100778739 to 100786486 7747 - protein coding gene cyclin B1
Tssr123811 13 100780178 to 100780182 4 - TSS region transcription start site region 123811
Cpgi6042 13 100786105 to 100786841 736 CpG island CpG island 6042
Tssr123812 13 100786538 to 100786556 18 - TSS region transcription start site region 123812
Tssr123813 13 100786600 to 100786612 12 - TSS region transcription start site region 123813
Slc30a5 13 100802648 to 100833427 30779 - protein coding gene solute carrier family 30 (zinc transporter), member 5
Cpgi6043 13 100832654 to 100833734 1080 CpG island CpG island 6043
Tssr123814 13 100833183 to 100833200 17 - TSS region transcription start site region 123814
Tssr123815 13 100833218 to 100833248 30 - TSS region transcription start site region 123815
Tssr123816 13 100833277 to 100833312 35 - TSS region transcription start site region 123816
Tssr123817 13 100833315 to 100833367 52 - TSS region transcription start site region 123817
Tssr123818 13 100833369 to 100833445 76 - TSS region transcription start site region 123818
Tssr123819 13 100833447 to 100833470 23 - TSS region transcription start site region 123819
Gm29502 13 100847433 to 100977915 130482 + lincRNA gene predicted gene 29502
Gm41040 13 100863402 to 100863851 449 - lncRNA gene predicted gene, 41040
Gm37830 13 100872780 to 100876195 3415 + unclassified gene predicted gene, 37830
Gm41041 13 100909097 to 100909889 792 - pseudogene predicted gene, 41041
Gm10257 13 100946405 to 100946815 410 - pseudogene predicted gene 10257
Tssr123820 13 100946928 to 100946930 2 - TSS region transcription start site region 123820
Gm41042 13 100997184 to 101080021 82837 + lncRNA gene predicted gene, 41042
Gm6114 13 101013019 to 101013986 967 - pseudogene predicted gene 6114
Hmgb1-ps9 13 101038602 to 101039246 644 - pseudogene high mobility group box 1, pseudogene 9
Tssr120858 13 101060471 to 101060479 8 + TSS region transcription start site region 120858
Cpgi6044 13 101210265 to 101210446 181 CpG island CpG island 6044
Gm36427 13 101226219 to 101306017 79798 - lncRNA gene predicted gene, 36427
5930438M14Rik 13 101232127 to 101247551 15424 + lincRNA gene RIKEN cDNA 5930438M14 gene
4933416M06Rik 13 101254319 to 101293396 39077 + lncRNA gene RIKEN cDNA 4933416M06 gene
4932411K12Rik 13 101301715 to 101464152 162437 + lincRNA gene RIKEN cDNA 4932411K12 gene
Gm2534 13 101348752 to 101349181 429 + pseudogene predicted gene 2534
4922502H24Rik 13 101391871 to 101397580 5709 - lncRNA gene RIKEN cDNA 4922502H24 gene
Tssr120859 13 101397666 to 101397673 7 + TSS region transcription start site region 120859
D13Mit72 13 101437068 to 101437217 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 72
Tssr120860 13 101442428 to 101442439 11 + TSS region transcription start site region 120860
Tssr120861 13 101442444 to 101442448 4 + TSS region transcription start site region 120861
Gm36994 13 101442760 to 101443251 491 - unclassified gene predicted gene, 36994
D13Mit30 13 101452884 to 101453030 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 30
Tssr120862 13 101455736 to 101455739 3 + TSS region transcription start site region 120862
Tssr120863 13 101478951 to 101478953 2 + TSS region transcription start site region 120863
A130049L09Rik 13 101514603 to 101518269 3666 unclassified gene RIKEN cDNA A130049L09 gene
Tssr120864 13 101533432 to 101533452 20 + TSS region transcription start site region 120864
Tssr123821 13 101538209 to 101538234 25 - TSS region transcription start site region 123821
Tssr123822 13 101538245 to 101538270 25 - TSS region transcription start site region 123822
Gm36475 13 101540559 to 101566823 26264 + lncRNA gene predicted gene, 36475
Gm41043 13 101543777 to 101548152 4375 - lncRNA gene predicted gene, 41043
Tssr120865 13 101545168 to 101545174 6 + TSS region transcription start site region 120865
Gm47533 13 101545206 to 101548279 3073 + lincRNA gene predicted gene, 47533
Tssr123823 13 101548075 to 101548093 18 - TSS region transcription start site region 123823
Tssr123824 13 101548143 to 101548157 14 - TSS region transcription start site region 123824
Tssr4154 13 101555977 to 101555978 1 + TSS region transcription start site region 4154
Gm19010 13 101557231 to 101557831 600 - pseudogene predicted gene, 19010
Gm36553 13 101589833 to 101613282 23449 + lncRNA gene predicted gene, 36553
Gm29341 13 101605618 to 101606233 615 - lincRNA gene predicted gene 29341
Tssr120866 13 101655112 to 101655137 25 + TSS region transcription start site region 120866
Tssr123825 13 101659133 to 101659142 9 - TSS region transcription start site region 123825
Tssr120867 13 101664148 to 101664153 5 + TSS region transcription start site region 120867
Tssr120868 13 101664253 to 101664263 10 + TSS region transcription start site region 120868
Pik3r1 13 101680761 to 101768217 87456 - protein coding gene phosphoinositide-3-kinase regulatory subunit 1
Tssr123826 13 101690567 to 101690587 20 - TSS region transcription start site region 123826
Tssr123827 13 101692110 to 101692114 4 - TSS region transcription start site region 123827
Tssr123828 13 101692286 to 101692299 13 - TSS region transcription start site region 123828
Tssr123829 13 101692313 to 101692329 16 - TSS region transcription start site region 123829
Tssr123830 13 101692332 to 101692384 52 - TSS region transcription start site region 123830
Tssr120869 13 101692478 to 101692499 21 + TSS region transcription start site region 120869
Tssr123831 13 101692498 to 101692509 11 - TSS region transcription start site region 123831
Tssr123832 13 101692563 to 101692600 37 - TSS region transcription start site region 123832
Tssr123833 13 101692605 to 101692621 16 - TSS region transcription start site region 123833
Tssr123834 13 101692624 to 101692638 14 - TSS region transcription start site region 123834
Cpgi6045 13 101694229 to 101694717 488 CpG island CpG island 6045
Tssr123835 13 101694427 to 101694431 4 - TSS region transcription start site region 123835
Tssr123836 13 101694513 to 101694612 99 - TSS region transcription start site region 123836
Tssr123837 13 101694679 to 101694707 28 - TSS region transcription start site region 123837
Tssr123838 13 101694716 to 101694760 44 - TSS region transcription start site region 123838
Cpgi6046 13 101694950 to 101695113 163 CpG island CpG island 6046
Tssr123839 13 101701858 to 101701873 15 - TSS region transcription start site region 123839
Tssr123840 13 101701875 to 101701935 60 - TSS region transcription start site region 123840
Tssr123841 13 101702079 to 101702116 37 - TSS region transcription start site region 123841
Tssr123842 13 101702120 to 101702127 7 - TSS region transcription start site region 123842
Tssr123843 13 101702128 to 101702138 10 - TSS region transcription start site region 123843
Tssr123844 13 101709682 to 101709703 21 - TSS region transcription start site region 123844
Tssr123845 13 101711808 to 101711810 2 - TSS region transcription start site region 123845
Tssr123846 13 101739914 to 101739919 5 - TSS region transcription start site region 123846
Tssr123847 13 101748542 to 101748546 4 - TSS region transcription start site region 123847
Gm36638 13 101752806 to 101753205 399 - unclassified non-coding RNA gene predicted gene, 36638
Tssr123848 13 101759662 to 101759666 4 - TSS region transcription start site region 123848
Cpgi6047 13 101767035 to 101768916 1881 CpG island CpG island 6047
Tssr123849 13 101768154 to 101768194 40 - TSS region transcription start site region 123849
Tssr120870 13 101773500 to 101773501 1 + TSS region transcription start site region 120870
Cpgi6048 13 101801399 to 101801814 415 CpG island CpG island 6048
Gm19108 13 101841540 to 101842306 766 - pseudogene predicted gene, 19108
Tssr4155 13 101845589 to 101845594 5 + TSS region transcription start site region 4155
Gm47007 13 101855491 to 101856351 860 + lincRNA gene predicted gene, 47007
D13Mit70 13 101861669 to 101861832 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 70
D13Mit71 13 101904040 to 101904155 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 71
Gm17832 13 101920411 to 101921235 824 + pseudogene predicted gene, 17832
Gm41044 13 101998661 to 102014347 15686 - lncRNA gene predicted gene, 41044
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Tssr123850 13 102014314 to 102014331 17 - TSS region transcription start site region 123850
Tssr120871 13 102036207 to 102036214 7 + TSS region transcription start site region 120871
Gm38133 13 102114117 to 102116035 1918 - unclassified gene predicted gene, 38133
Gm25808 13 102228669 to 102228952 283 + unclassified non-coding RNA gene predicted gene, 25808
Tssr120872 13 102295285 to 102295292 7 + TSS region transcription start site region 120872
Cpgi6049 13 102295489 to 102295642 153 CpG island CpG island 6049
Gm46397 13 102342557 to 102351981 9424 - lncRNA gene predicted gene, 46397
Tssr120873 13 102349691 to 102349724 33 + TSS region transcription start site region 120873
Gm36703 13 102349730 to 102356684 6954 + lncRNA gene predicted gene, 36703
Gm47008 13 102366891 to 102367152 261 - pseudogene predicted gene, 47008
Tssr120874 13 102410818 to 102410821 3 + TSS region transcription start site region 120874