Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:100079165-100569300

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bdp1 13 100017994 to 100104070 86076 - protein coding gene B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Cpgi6029 13 100103569 to 100104181 612 CpG island CpG island 6029
Tssr123771 13 100104027 to 100104053 26 - TSS region transcription start site region 123771
Tssr123772 13 100104064 to 100104082 18 - TSS region transcription start site region 123772
Tssr123773 13 100104083 to 100104094 11 - TSS region transcription start site region 123773
Tssr120839 13 100104209 to 100104212 3 + TSS region transcription start site region 120839
D13Die11 13 100106326 to 100106389 63 DNA segment DNA segment, Chr 13, Dietrich 11
D13Die22 13 100106406 to 100106543 137 DNA segment DNA segment, Chr 13, Dietrich 22
BC001981 13 100106795 to 100108339 1544 - antisense lncRNA gene cDNA sequence BC001981
Cpgi6030 13 100107550 to 100108582 1032 CpG island CpG island 6030
Tssr120840 13 100108007 to 100108012 5 + TSS region transcription start site region 120840
Tssr120841 13 100108014 to 100108143 129 + TSS region transcription start site region 120841
Serf1 13 100108019 to 100114233 6214 + protein coding gene small EDRK-rich factor 1
Tssr120842 13 100108156 to 100108167 11 + TSS region transcription start site region 120842
Tssr123774 13 100108178 to 100108183 5 - TSS region transcription start site region 123774
Tssr123775 13 100109079 to 100109114 35 - TSS region transcription start site region 123775
D13Die13 13 100112322 to 100112522 200 DNA segment DNA segment, Chr 13, Dietrich 13
Tssr123776 13 100113996 to 100114038 42 - TSS region transcription start site region 123776
D13Die6 13 100116252 to 100116375 123 DNA segment DNA segment, Chr 13, Dietrich 6
Cpgi6031 13 100124571 to 100125378 807 CpG island CpG island 6031
Tssr120843 13 100124850 to 100124886 36 + TSS region transcription start site region 120843
Smn1 13 100124852 to 100137690 12838 + protein coding gene survival motor neuron 1
Tssr120844 13 100127929 to 100127942 13 + TSS region transcription start site region 120844
Naip2 13 100144063 to 100202092 58029 - protein coding gene NLR family, apoptosis inhibitory protein 2
Tssr123777 13 100152811 to 100152822 11 - TSS region transcription start site region 123777
D13Die26 13 100152950 to 100153117 167 DNA segment DNA segment, Chr 13, Dietrich 26
Tssr4152 13 100153127 to 100153128 1 + TSS region transcription start site region 4152
Gm18413 13 100153851 to 100154505 654 - pseudogene predicted gene, 18413
Tssr123778 13 100174433 to 100174444 11 - TSS region transcription start site region 123778
Tssr123779 13 100174566 to 100174580 14 - TSS region transcription start site region 123779
D13Die24 13 100186566 to 100186721 155 DNA segment DNA segment, Chr 13, Dietrich 24
Naip1-rs1 13 100188893 to 100189155 262 - pseudogene NLR family, apoptosis inhibitory protein 1, related sequence 1
D13Die23 13 100196582 to 100196895 313 DNA segment DNA segment, Chr 13, Dietrich 23
Tssr123780 13 100202110 to 100202128 18 - TSS region transcription start site region 123780
D13Die27 13 100204243 to 100204381 138 DNA segment DNA segment, Chr 13, Dietrich 27
Naip5 13 100211739 to 100246323 34584 - protein coding gene NLR family, apoptosis inhibitory protein 5
D13Die35a 13 100220449 to 100220628 179 DNA segment DNA segment, Chr 13, Dietrich 35a
D13Mit37a 13 100230784 to 100231020 236 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 37a
Tssr123781 13 100232408 to 100232411 3 - TSS region transcription start site region 123781
Tssr123782 13 100233335 to 100233340 5 - TSS region transcription start site region 123782
Del(13Naip1-Naip5)1Vnce 13 100246323 to 100407770 161447 chromosomal deletion deletion, Chr 13, Russell Vance 1
Tssr123783 13 100247332 to 100247343 11 - TSS region transcription start site region 123783
D13Die7a 13 100253123 to 100253255 132 DNA segment DNA segment, Chr 13, Dietrich 7a
Naip3-ps1 13 100264745 to 100278817 14072 - pseudogene NLR family, apoptosis inhibitory protein 3, pseudogene 1
D13Die36a 13 100267164 to 100267387 223 DNA segment DNA segment, Chr 13, Dietrich 36a
Naip3-ps3 13 100275197 to 100275933 736 pseudogene NLR family, apoptosis inhibitory protein 3, pseudogene 3
Naip6 13 100281121 to 100316616 35495 - protein coding gene NLR family, apoptosis inhibitory protein 6
D13Die32 13 100294346 to 100294755 409 DNA segment DNA segment, Chr 13, Dietrich 32
Tssr123784 13 100296414 to 100296418 4 - TSS region transcription start site region 123784
D13Die35b 13 100297690 to 100297959 269 DNA segment DNA segment, Chr 13, Dietrich 35b
D13Mit37b 13 100304468 to 100304707 239 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 37b
Tssr123785 13 100307022 to 100307027 5 - TSS region transcription start site region 123785
D13Die7b 13 100324165 to 100324300 135 DNA segment DNA segment, Chr 13, Dietrich 7b
Naip3 13 100340144 to 100378960 38816 - pseudogene NLR family, apoptosis inhibitory protein 3
D13Die36b 13 100345170 to 100345384 214 DNA segment DNA segment, Chr 13, Dietrich 36b
Gm18601 13 100392732 to 100394499 1767 + pseudogene predicted gene, 18601
Naip1 13 100407770 to 100452864 45094 - protein coding gene NLR family, apoptosis inhibitory protein 1
Rpl31-ps13 13 100415565 to 100415942 377 + pseudogene ribosomal protein L31, pseudogene 13
D13Die3 13 100433095 to 100433313 218 DNA segment DNA segment, Chr 13, Dietrich 3
Tssr123786 13 100437494 to 100437507 13 - TSS region transcription start site region 123786
Tssr4153 13 100448726 to 100448731 5 - TSS region transcription start site region 4153
Tssr123787 13 100452849 to 100452860 11 - TSS region transcription start site region 123787
Gtf2h2 13 100460218 to 100492579 32361 - protein coding gene general transcription factor II H, polypeptide 2
Tssr123788 13 100467210 to 100467214 4 - TSS region transcription start site region 123788
Gm48452 13 100467932 to 100468187 255 + pseudogene predicted gene, 48452
Tssr123789 13 100490116 to 100490134 18 - TSS region transcription start site region 123789
Cpgi6032 13 100492039 to 100492769 730 CpG island CpG island 6032
Tssr123790 13 100492356 to 100492388 32 - TSS region transcription start site region 123790
Tssr123791 13 100492551 to 100492601 50 - TSS region transcription start site region 123791
Ocln 13 100496507 to 100552718 56211 - protein coding gene occludin
D13Die12 13 100497340 to 100497502 162 DNA segment DNA segment, Chr 13, Dietrich 12
Tssr123792 13 100497897 to 100497899 2 - TSS region transcription start site region 123792
Tssr123793 13 100515135 to 100515139 4 - TSS region transcription start site region 123793
D13Mit203.2 13 100515747 to 100515862 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203.2
D13Mit203 13 100515823 to 100515965 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203
D13Die42 13 100542404 to 100542604 200 DNA segment DNA segment, Chr 13, Dietrich 42
Cpgi6033 13 100551291 to 100553040 1749 CpG island CpG island 6033
Tssr123794 13 100552442 to 100552479 37 - TSS region transcription start site region 123794
Tssr123795 13 100552598 to 100552656 58 - TSS region transcription start site region 123795
Tssr123796 13 100552666 to 100552677 11 - TSS region transcription start site region 123796
Tssr123797 13 100552704 to 100552721 17 - TSS region transcription start site region 123797
Tssr123798 13 100553167 to 100553210 43 - TSS region transcription start site region 123798
D13Die43 13 100555212 to 100555499 287 DNA segment DNA segment, Chr 13, Dietrich 43
Gm48596 13 100557426 to 100560639 3213 + lincRNA gene predicted gene, 48596
Gm8847 13 100559402 to 100560032 630 - pseudogene predicted gene 8847
D13Die44 13 100567745 to 100568022 277 DNA segment DNA segment, Chr 13, Dietrich 44