Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:99844001-100556096

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efcab11 12 99693045 to 99884439 191394 - protein coding gene EF-hand calcium binding domain 11
Gm47207 12 99821678 to 99850951 29273 + antisense lncRNA gene predicted gene, 47207
Tssr3918 12 99874744 to 99874749 5 - TSS region transcription start site region 3918
Cpgi4981 12 99883117 to 99883637 520 CpG island CpG island 4981
Tssr117311 12 99883401 to 99883428 27 - TSS region transcription start site region 117311
Tssr117312 12 99883429 to 99883460 31 - TSS region transcription start site region 117312
Cpgi4982 12 99884197 to 99885099 902 CpG island CpG island 4982
Tssr114672 12 99884498 to 99884531 33 + TSS region transcription start site region 114672
Tdp1 12 99884517 to 99955219 70702 + protein coding gene tyrosyl-DNA phosphodiesterase 1
Gm40556 12 99884560 to 99886471 1911 + protein coding gene predicted gene, 40556
Gm48147 12 99904928 to 99905278 350 + pseudogene predicted gene, 48147
Cpgi4983 12 99964440 to 99966392 1952 CpG island CpG island 4983
Tssr114673 12 99964513 to 99964524 11 + TSS region transcription start site region 114673
Tssr114674 12 99964526 to 99964539 13 + TSS region transcription start site region 114674
Tssr114675 12 99964670 to 99964697 27 + TSS region transcription start site region 114675
Tssr114676 12 99965179 to 99965280 101 + TSS region transcription start site region 114676
Tssr117313 12 99965649 to 99965675 26 - TSS region transcription start site region 117313
Tssr114677 12 99965753 to 99965788 35 + TSS region transcription start site region 114677
Tssr114678 12 99965792 to 99965817 25 + TSS region transcription start site region 114678
Tssr114679 12 99965927 to 99965946 19 + TSS region transcription start site region 114679
Tssr114680 12 99971665 to 99971686 21 + TSS region transcription start site region 114680
Tssr114681 12 99979915 to 99979927 12 + TSS region transcription start site region 114681
Gm23291 12 99982775 to 99982852 77 - miRNA gene predicted gene, 23291
Tssr114682 12 99999155 to 99999161 6 + TSS region transcription start site region 114682
Tssr114683 12 100003686 to 100003703 17 + TSS region transcription start site region 114683
Tssr114684 12 100007072 to 100007099 27 + TSS region transcription start site region 114684
Tssr114685 12 100010755 to 100010769 14 + TSS region transcription start site region 114685
Tssr114686 12 100044608 to 100044615 7 + TSS region transcription start site region 114686
D12Mit30 12 100056744 to 100056850 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 30
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Kcnk13 12 100062682 to 99964499 -98183 + protein coding gene potassium channel, subfamily K, member 13
Tssr114687 12 100072436 to 100072443 7 + TSS region transcription start site region 114687
4930477G07Rik 12 100076908 to 100097218 20310 - lincRNA gene RIKEN cDNA 4930477G07 gene
9530050K03Rik 12 100079490 to 100080395 905 - pseudogene RIKEN cDNA 9530050K03 gene
Cpgi4984 12 100110020 to 100110915 895 CpG island CpG island 4984
Tssr114688 12 100110148 to 100110193 45 + TSS region transcription start site region 114688
Psmc1 12 100110202 to 100123364 13162 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 1
Nrde2 12 100125452 to 100159653 34201 - protein coding gene nrde-2 necessary for RNA interference, domain containing
Tssr3919 12 100134457 to 100134470 13 - TSS region transcription start site region 3919
Tssr114689 12 100156520 to 100156537 17 + TSS region transcription start site region 114689
Cpgi4985 12 100159299 to 100159763 464 CpG island CpG island 4985
Tssr117314 12 100159601 to 100159672 71 - TSS region transcription start site region 117314
D12Mit97 12 100174644 to 100174823 179 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 97
Gm36263 12 100174851 to 100181263 6412 - lncRNA gene predicted gene, 36263
Tssr117315 12 100179010 to 100179011 1 - TSS region transcription start site region 117315
Tssr117316 12 100180953 to 100180976 23 - TSS region transcription start site region 117316
Tssr114690 12 100184226 to 100184250 24 + TSS region transcription start site region 114690
Gm48296 12 100187011 to 100187705 694 + unclassified gene predicted gene, 48296
Cpgi4986 12 100187040 to 100188008 968 CpG island CpG island 4986
Tssr114691 12 100187105 to 100187123 18 + TSS region transcription start site region 114691
Tssr117317 12 100187436 to 100187448 12 - TSS region transcription start site region 117317
Tssr114692 12 100187676 to 100187718 42 + TSS region transcription start site region 114692
Gm10433 12 100187968 to 100193538 5570 + lncRNA gene predicted gene 10433
Cpgi4987 12 100199001 to 100201096 2095 CpG island CpG island 4987
Calm1 12 100199435 to 100209814 10379 + protein coding gene calmodulin 1
Tssr114693 12 100199509 to 100199514 5 + TSS region transcription start site region 114693
Tssr114694 12 100199519 to 100199538 19 + TSS region transcription start site region 114694
Tssr114695 12 100199547 to 100199552 5 + TSS region transcription start site region 114695
Tssr114696 12 100199561 to 100199578 17 + TSS region transcription start site region 114696
Tssr114697 12 100199594 to 100199598 4 + TSS region transcription start site region 114697
Tssr114698 12 100203608 to 100203622 14 + TSS region transcription start site region 114698
Tssr114699 12 100203633 to 100203673 40 + TSS region transcription start site region 114699
Tssr117318 12 100203693 to 100203724 31 - TSS region transcription start site region 117318
Tssr114700 12 100205608 to 100205661 53 + TSS region transcription start site region 114700
Tssr117319 12 100205661 to 100205701 40 - TSS region transcription start site region 117319
Tssr114701 12 100206092 to 100206109 17 + TSS region transcription start site region 114701
Tssr114702 12 100206114 to 100206139 25 + TSS region transcription start site region 114702
Tssr114703 12 100206148 to 100206165 17 + TSS region transcription start site region 114703
Tssr117320 12 100206157 to 100206231 74 - TSS region transcription start site region 117320
Tssr114704 12 100206425 to 100206459 34 + TSS region transcription start site region 114704
Tssr117321 12 100206486 to 100206501 15 - TSS region transcription start site region 117321
Tssr114705 12 100206539 to 100206578 39 + TSS region transcription start site region 114705
Tssr114706 12 100206601 to 100206636 35 + TSS region transcription start site region 114706
Tssr114707 12 100206711 to 100206766 55 + TSS region transcription start site region 114707
Tssr114708 12 100207372 to 100207388 16 + TSS region transcription start site region 114708
Tssr114709 12 100207569 to 100207586 17 + TSS region transcription start site region 114709
Tssr114710 12 100208224 to 100208239 15 + TSS region transcription start site region 114710
Gm26723 12 100208988 to 100209814 826 - lincRNA gene predicted gene, 26723
Gm40557 12 100238009 to 100242260 4251 - lincRNA gene predicted gene, 40557
Tssr117322 12 100239527 to 100239564 37 - TSS region transcription start site region 117322
Gm10432 12 100276609 to 100300908 24299 + lncRNA gene predicted gene 10432
Ttc7b 12 100300770 to 100520822 220052 - protein coding gene tetratricopeptide repeat domain 7B
Gm48382 12 100366078 to 100369752 3674 - unclassified gene predicted gene, 48382
Gm48381 12 100440697 to 100444660 3963 - unclassified gene predicted gene, 48381
Tssr117323 12 100447290 to 100447291 1 - TSS region transcription start site region 117323
Gm48383 12 100465039 to 100488390 23351 + antisense lncRNA gene predicted gene, 48383
Gm36375 12 100487660 to 100493910 6250 - protein coding gene predicted gene, 36375
Cpgi4988 12 100499547 to 100499763 216 CpG island CpG island 4988
D12Mit98 12 100500769 to 100500902 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 98
Cpgi4989 12 100519902 to 100521353 1451 CpG island CpG island 4989
Tssr117324 12 100520778 to 100520853 75 - TSS region transcription start site region 117324
Rps6ka5 12 100549778 to 100725395 175617 - protein coding gene ribosomal protein S6 kinase, polypeptide 5