Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:99474389-100135648

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxn3 12 99190078 to 99563582 373504 - protein coding gene forkhead box N3
Tssr114662 12 99514773 to 99514774 1 + TSS region transcription start site region 114662
Tssr114663 12 99562815 to 99562819 4 + TSS region transcription start site region 114663
Cpgi4977 12 99563237 to 99563987 750 CpG island CpG island 4977
Tssr117300 12 99563562 to 99563651 89 - TSS region transcription start site region 117300
Tssr117301 12 99563718 to 99563729 11 - TSS region transcription start site region 117301
Gm26839 12 99563841 to 99620038 56197 + bidirectional promoter lncRNA gene predicted gene, 26839
Tssr117302 12 99563903 to 99563917 14 - TSS region transcription start site region 117302
Tssr117303 12 99563919 to 99563935 16 - TSS region transcription start site region 117303
Tssr117304 12 99563956 to 99563959 3 - TSS region transcription start site region 117304
Gm47177 12 99567882 to 99569668 1786 - lincRNA gene predicted gene, 47177
4930556H04Rik 12 99569740 to 99571414 1674 + unclassified gene RIKEN cDNA 4930556H04 gene
Cpgi4978 12 99570171 to 99570386 215 CpG island CpG island 4978
Tssr114664 12 99609200 to 99609210 10 + TSS region transcription start site region 114664
Gm35644 12 99610096 to 99619659 9563 - lncRNA gene predicted gene, 35644
Tssr117305 12 99610278 to 99610303 25 - TSS region transcription start site region 117305
1700064M15Rik 12 99626053 to 99627974 1921 - lincRNA gene RIKEN cDNA 1700064M15 gene
Cpgi4979 12 99627568 to 99628307 739 CpG island CpG island 4979
Tssr117306 12 99627927 to 99627936 9 - TSS region transcription start site region 117306
Tssr117307 12 99627945 to 99627961 16 - TSS region transcription start site region 117307
Tssr117308 12 99627964 to 99627985 21 - TSS region transcription start site region 117308
Gm47196 12 99639716 to 99641924 2208 - unclassified gene predicted gene, 47196
Tssr117309 12 99642682 to 99642692 10 - TSS region transcription start site region 117309
Tssr117310 12 99642714 to 99642723 9 - TSS region transcription start site region 117310
Gm19951 12 99643093 to 99647221 4128 + lincRNA gene predicted gene, 19951
Tssr114665 12 99643094 to 99643097 3 + TSS region transcription start site region 114665
Cpgi4980 12 99644914 to 99645444 530 CpG island CpG island 4980
Tssr114666 12 99645057 to 99645063 6 + TSS region transcription start site region 114666
Tssr114667 12 99645224 to 99645255 31 + TSS region transcription start site region 114667
Tssr114668 12 99645459 to 99645497 38 + TSS region transcription start site region 114668
Tssr114669 12 99645548 to 99645564 16 + TSS region transcription start site region 114669
Tssr114670 12 99647206 to 99647208 2 + TSS region transcription start site region 114670
Tssr114671 12 99687166 to 99687168 2 + TSS region transcription start site region 114671
Efcab11 12 99693045 to 99884439 191394 - protein coding gene EF-hand calcium binding domain 11
Ppiq11 12 99700137 to 99700137 0 QTL prepulse inhibition QTL 11
Gm47208 12 99761351 to 99762254 903 - unclassified gene predicted gene, 47208
Gm19238 12 99804389 to 99805648 1259 - pseudogene predicted gene, 19238
Gm47207 12 99821678 to 99850951 29273 + antisense lncRNA gene predicted gene, 47207
Gm47206 12 99829953 to 99832219 2266 - unclassified gene predicted gene, 47206
Tssr3918 12 99874744 to 99874749 5 - TSS region transcription start site region 3918
Cpgi4981 12 99883117 to 99883637 520 CpG island CpG island 4981
Tssr117311 12 99883401 to 99883428 27 - TSS region transcription start site region 117311
Tssr117312 12 99883429 to 99883460 31 - TSS region transcription start site region 117312
Cpgi4982 12 99884197 to 99885099 902 CpG island CpG island 4982
Tssr114672 12 99884498 to 99884531 33 + TSS region transcription start site region 114672
Tdp1 12 99884517 to 99955219 70702 + protein coding gene tyrosyl-DNA phosphodiesterase 1
Gm40556 12 99884560 to 99886471 1911 + protein coding gene predicted gene, 40556
Gm48147 12 99904928 to 99905278 350 + pseudogene predicted gene, 48147
Cpgi4983 12 99964440 to 99966392 1952 CpG island CpG island 4983
Tssr114673 12 99964513 to 99964524 11 + TSS region transcription start site region 114673
Tssr114674 12 99964526 to 99964539 13 + TSS region transcription start site region 114674
Tssr114675 12 99964670 to 99964697 27 + TSS region transcription start site region 114675
Tssr114676 12 99965179 to 99965280 101 + TSS region transcription start site region 114676
Tssr117313 12 99965649 to 99965675 26 - TSS region transcription start site region 117313
Tssr114677 12 99965753 to 99965788 35 + TSS region transcription start site region 114677
Tssr114678 12 99965792 to 99965817 25 + TSS region transcription start site region 114678
Tssr114679 12 99965927 to 99965946 19 + TSS region transcription start site region 114679
Tssr114680 12 99971665 to 99971686 21 + TSS region transcription start site region 114680
Tssr114681 12 99979915 to 99979927 12 + TSS region transcription start site region 114681
Gm23291 12 99982775 to 99982852 77 - miRNA gene predicted gene, 23291
Tssr114682 12 99999155 to 99999161 6 + TSS region transcription start site region 114682
Tssr114683 12 100003686 to 100003703 17 + TSS region transcription start site region 114683
Tssr114684 12 100007072 to 100007099 27 + TSS region transcription start site region 114684
Tssr114685 12 100010755 to 100010769 14 + TSS region transcription start site region 114685
Tssr114686 12 100044608 to 100044615 7 + TSS region transcription start site region 114686
D12Mit30 12 100056744 to 100056850 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 30
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Kcnk13 12 100062682 to 99964499 -98183 + protein coding gene potassium channel, subfamily K, member 13
Tssr114687 12 100072436 to 100072443 7 + TSS region transcription start site region 114687
4930477G07Rik 12 100076908 to 100097218 20310 - lincRNA gene RIKEN cDNA 4930477G07 gene
9530050K03Rik 12 100079490 to 100080395 905 - pseudogene RIKEN cDNA 9530050K03 gene
Cpgi4984 12 100110020 to 100110915 895 CpG island CpG island 4984
Tssr114688 12 100110148 to 100110193 45 + TSS region transcription start site region 114688
Psmc1 12 100110202 to 100123364 13162 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 1
Nrde2 12 100125452 to 100159653 34201 - protein coding gene nrde-2 necessary for RNA interference, domain containing
Tssr3919 12 100134457 to 100134470 13 - TSS region transcription start site region 3919