Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:99413117-100353637

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxn3 12 99190078 to 99563582 373504 - protein coding gene forkhead box N3
Tssr117296 12 99420508 to 99420512 4 - TSS region transcription start site region 117296
Tssr117297 12 99434414 to 99434420 6 - TSS region transcription start site region 117297
Tssr117298 12 99445554 to 99445558 4 - TSS region transcription start site region 117298
Tssr117299 12 99457895 to 99457918 23 - TSS region transcription start site region 117299
Tssr114662 12 99514773 to 99514774 1 + TSS region transcription start site region 114662
Tssr114663 12 99562815 to 99562819 4 + TSS region transcription start site region 114663
Cpgi4977 12 99563237 to 99563987 750 CpG island CpG island 4977
Tssr117300 12 99563562 to 99563651 89 - TSS region transcription start site region 117300
Tssr117301 12 99563718 to 99563729 11 - TSS region transcription start site region 117301
Gm26839 12 99563841 to 99620038 56197 + bidirectional promoter lncRNA gene predicted gene, 26839
Tssr117302 12 99563903 to 99563917 14 - TSS region transcription start site region 117302
Tssr117303 12 99563919 to 99563935 16 - TSS region transcription start site region 117303
Tssr117304 12 99563956 to 99563959 3 - TSS region transcription start site region 117304
Gm47177 12 99567882 to 99569668 1786 - lincRNA gene predicted gene, 47177
4930556H04Rik 12 99569740 to 99571414 1674 + unclassified gene RIKEN cDNA 4930556H04 gene
Cpgi4978 12 99570171 to 99570386 215 CpG island CpG island 4978
Tssr114664 12 99609200 to 99609210 10 + TSS region transcription start site region 114664
Gm35644 12 99610096 to 99619659 9563 - lncRNA gene predicted gene, 35644
Tssr117305 12 99610278 to 99610303 25 - TSS region transcription start site region 117305
1700064M15Rik 12 99626053 to 99627974 1921 - lincRNA gene RIKEN cDNA 1700064M15 gene
Cpgi4979 12 99627568 to 99628307 739 CpG island CpG island 4979
Tssr117306 12 99627927 to 99627936 9 - TSS region transcription start site region 117306
Tssr117307 12 99627945 to 99627961 16 - TSS region transcription start site region 117307
Tssr117308 12 99627964 to 99627985 21 - TSS region transcription start site region 117308
Gm47196 12 99639716 to 99641924 2208 - unclassified gene predicted gene, 47196
Tssr117309 12 99642682 to 99642692 10 - TSS region transcription start site region 117309
Tssr117310 12 99642714 to 99642723 9 - TSS region transcription start site region 117310
Gm19951 12 99643093 to 99647221 4128 + lincRNA gene predicted gene, 19951
Tssr114665 12 99643094 to 99643097 3 + TSS region transcription start site region 114665
Cpgi4980 12 99644914 to 99645444 530 CpG island CpG island 4980
Tssr114666 12 99645057 to 99645063 6 + TSS region transcription start site region 114666
Tssr114667 12 99645224 to 99645255 31 + TSS region transcription start site region 114667
Tssr114668 12 99645459 to 99645497 38 + TSS region transcription start site region 114668
Tssr114669 12 99645548 to 99645564 16 + TSS region transcription start site region 114669
Tssr114670 12 99647206 to 99647208 2 + TSS region transcription start site region 114670
Tssr114671 12 99687166 to 99687168 2 + TSS region transcription start site region 114671
Efcab11 12 99693045 to 99884439 191394 - protein coding gene EF-hand calcium binding domain 11
Ppiq11 12 99700137 to 99700137 0 QTL prepulse inhibition QTL 11
Gm47208 12 99761351 to 99762254 903 - unclassified gene predicted gene, 47208
Gm19238 12 99804389 to 99805648 1259 - pseudogene predicted gene, 19238
Gm47207 12 99821678 to 99850951 29273 + antisense lncRNA gene predicted gene, 47207
Gm47206 12 99829953 to 99832219 2266 - unclassified gene predicted gene, 47206
Tssr3918 12 99874744 to 99874749 5 - TSS region transcription start site region 3918
Cpgi4981 12 99883117 to 99883637 520 CpG island CpG island 4981
Tssr117311 12 99883401 to 99883428 27 - TSS region transcription start site region 117311
Tssr117312 12 99883429 to 99883460 31 - TSS region transcription start site region 117312
Cpgi4982 12 99884197 to 99885099 902 CpG island CpG island 4982
Tssr114672 12 99884498 to 99884531 33 + TSS region transcription start site region 114672
Tdp1 12 99884517 to 99955219 70702 + protein coding gene tyrosyl-DNA phosphodiesterase 1
Gm40556 12 99884560 to 99886471 1911 + protein coding gene predicted gene, 40556
Gm48147 12 99904928 to 99905278 350 + pseudogene predicted gene, 48147
Cpgi4983 12 99964440 to 99966392 1952 CpG island CpG island 4983
Tssr114673 12 99964513 to 99964524 11 + TSS region transcription start site region 114673
Tssr114674 12 99964526 to 99964539 13 + TSS region transcription start site region 114674
Tssr114675 12 99964670 to 99964697 27 + TSS region transcription start site region 114675
Tssr114676 12 99965179 to 99965280 101 + TSS region transcription start site region 114676
Tssr117313 12 99965649 to 99965675 26 - TSS region transcription start site region 117313
Tssr114677 12 99965753 to 99965788 35 + TSS region transcription start site region 114677
Tssr114678 12 99965792 to 99965817 25 + TSS region transcription start site region 114678
Tssr114679 12 99965927 to 99965946 19 + TSS region transcription start site region 114679
Tssr114680 12 99971665 to 99971686 21 + TSS region transcription start site region 114680
Tssr114681 12 99979915 to 99979927 12 + TSS region transcription start site region 114681
Gm23291 12 99982775 to 99982852 77 - miRNA gene predicted gene, 23291
Tssr114682 12 99999155 to 99999161 6 + TSS region transcription start site region 114682
Tssr114683 12 100003686 to 100003703 17 + TSS region transcription start site region 114683
Tssr114684 12 100007072 to 100007099 27 + TSS region transcription start site region 114684
Tssr114685 12 100010755 to 100010769 14 + TSS region transcription start site region 114685
Tssr114686 12 100044608 to 100044615 7 + TSS region transcription start site region 114686
D12Mit30 12 100056744 to 100056850 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 30
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Kcnk13 12 100062682 to 99964499 -98183 + protein coding gene potassium channel, subfamily K, member 13
Tssr114687 12 100072436 to 100072443 7 + TSS region transcription start site region 114687
4930477G07Rik 12 100076908 to 100097218 20310 - lincRNA gene RIKEN cDNA 4930477G07 gene
9530050K03Rik 12 100079490 to 100080395 905 - pseudogene RIKEN cDNA 9530050K03 gene
Cpgi4984 12 100110020 to 100110915 895 CpG island CpG island 4984
Tssr114688 12 100110148 to 100110193 45 + TSS region transcription start site region 114688
Psmc1 12 100110202 to 100123364 13162 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 1
Nrde2 12 100125452 to 100159653 34201 - protein coding gene nrde-2 necessary for RNA interference, domain containing
Tssr3919 12 100134457 to 100134470 13 - TSS region transcription start site region 3919
Tssr114689 12 100156520 to 100156537 17 + TSS region transcription start site region 114689
Cpgi4985 12 100159299 to 100159763 464 CpG island CpG island 4985
Tssr117314 12 100159601 to 100159672 71 - TSS region transcription start site region 117314
D12Mit97 12 100174644 to 100174823 179 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 97
Gm36263 12 100174851 to 100181263 6412 - lncRNA gene predicted gene, 36263
Tssr117315 12 100179010 to 100179011 1 - TSS region transcription start site region 117315
Tssr117316 12 100180953 to 100180976 23 - TSS region transcription start site region 117316
Tssr114690 12 100184226 to 100184250 24 + TSS region transcription start site region 114690
Gm48296 12 100187011 to 100187705 694 + unclassified gene predicted gene, 48296
Cpgi4986 12 100187040 to 100188008 968 CpG island CpG island 4986
Tssr114691 12 100187105 to 100187123 18 + TSS region transcription start site region 114691
Tssr117317 12 100187436 to 100187448 12 - TSS region transcription start site region 117317
Tssr114692 12 100187676 to 100187718 42 + TSS region transcription start site region 114692
Gm10433 12 100187968 to 100193538 5570 + lncRNA gene predicted gene 10433
Cpgi4987 12 100199001 to 100201096 2095 CpG island CpG island 4987
Calm1 12 100199435 to 100209814 10379 + protein coding gene calmodulin 1
Tssr114693 12 100199509 to 100199514 5 + TSS region transcription start site region 114693
Tssr114694 12 100199519 to 100199538 19 + TSS region transcription start site region 114694
Tssr114695 12 100199547 to 100199552 5 + TSS region transcription start site region 114695
Tssr114696 12 100199561 to 100199578 17 + TSS region transcription start site region 114696
Tssr114697 12 100199594 to 100199598 4 + TSS region transcription start site region 114697
Tssr114698 12 100203608 to 100203622 14 + TSS region transcription start site region 114698
Tssr114699 12 100203633 to 100203673 40 + TSS region transcription start site region 114699
Tssr117318 12 100203693 to 100203724 31 - TSS region transcription start site region 117318
Tssr114700 12 100205608 to 100205661 53 + TSS region transcription start site region 114700
Tssr117319 12 100205661 to 100205701 40 - TSS region transcription start site region 117319
Tssr114701 12 100206092 to 100206109 17 + TSS region transcription start site region 114701
Tssr114702 12 100206114 to 100206139 25 + TSS region transcription start site region 114702
Tssr114703 12 100206148 to 100206165 17 + TSS region transcription start site region 114703
Tssr117320 12 100206157 to 100206231 74 - TSS region transcription start site region 117320
Tssr114704 12 100206425 to 100206459 34 + TSS region transcription start site region 114704
Tssr117321 12 100206486 to 100206501 15 - TSS region transcription start site region 117321
Tssr114705 12 100206539 to 100206578 39 + TSS region transcription start site region 114705
Tssr114706 12 100206601 to 100206636 35 + TSS region transcription start site region 114706
Tssr114707 12 100206711 to 100206766 55 + TSS region transcription start site region 114707
Tssr114708 12 100207372 to 100207388 16 + TSS region transcription start site region 114708
Tssr114709 12 100207569 to 100207586 17 + TSS region transcription start site region 114709
Tssr114710 12 100208224 to 100208239 15 + TSS region transcription start site region 114710
Gm26723 12 100208988 to 100209814 826 - lincRNA gene predicted gene, 26723
Gm40557 12 100238009 to 100242260 4251 - lincRNA gene predicted gene, 40557
Tssr117322 12 100239527 to 100239564 37 - TSS region transcription start site region 117322
Gm10432 12 100276609 to 100300908 24299 + lncRNA gene predicted gene 10432
Ttc7b 12 100300770 to 100520822 220052 - protein coding gene tetratricopeptide repeat domain 7B