Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:98827419-99517421

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eml5 12 98786805 to 98901484 114679 - protein coding gene echinoderm microtubule associated protein like 5
A930040O22Rik 12 98831813 to 98832785 972 + unclassified gene RIKEN cDNA A930040O22 gene
Tssr117280 12 98877757 to 98877761 4 - TSS region transcription start site region 117280
Cpgi4973 12 98900429 to 98901720 1291 CpG island CpG island 4973
Tssr117281 12 98901264 to 98901275 11 - TSS region transcription start site region 117281
Tssr117282 12 98901311 to 98901322 11 - TSS region transcription start site region 117282
Tssr117283 12 98901415 to 98901472 57 - TSS region transcription start site region 117283
Tssr117284 12 98901478 to 98901492 14 - TSS region transcription start site region 117284
Cpgi4974 12 98920408 to 98920719 311 CpG island CpG island 4974
Tssr114655 12 98920531 to 98920553 22 + TSS region transcription start site region 114655
Tssr114656 12 98920567 to 98920619 52 + TSS region transcription start site region 114656
Ttc8 12 98920574 to 98983238 62664 + protein coding gene tetratricopeptide repeat domain 8
Tssr114657 12 98920620 to 98920634 14 + TSS region transcription start site region 114657
Tssr114658 12 98920644 to 98920662 18 + TSS region transcription start site region 114658
Tssr114659 12 98950099 to 98950116 17 + TSS region transcription start site region 114659
Gm47109 12 98991340 to 98993009 1669 - lincRNA gene predicted gene, 47109
Tssr117285 12 99011638 to 99011675 37 - TSS region transcription start site region 117285
Gm40554 12 99024263 to 99073006 48743 + lncRNA gene predicted gene, 40554
Gm47116 12 99033500 to 99063458 29958 - lincRNA gene predicted gene, 47116
Tssr114660 12 99047159 to 99047167 8 + TSS region transcription start site region 114660
Rpl30-ps8 12 99047230 to 99047574 344 + pseudogene ribosomal protein L30, pseudogene 8
D12Mit77 12 99066227 to 99066415 188 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 77
Cpgi4975 12 99084233 to 99084585 352 CpG island CpG island 4975
4930474N09Rik 12 99161277 to 99162808 1531 - lincRNA gene RIKEN cDNA 4930474N09 gene
Tssr117286 12 99162644 to 99162658 14 - TSS region transcription start site region 117286
Tssr117287 12 99162661 to 99162669 8 - TSS region transcription start site region 117287
Tssr117288 12 99172419 to 99172421 2 - TSS region transcription start site region 117288
Foxn3 12 99190078 to 99563582 373504 - protein coding gene forkhead box N3
Tssr117289 12 99194716 to 99194720 4 - TSS region transcription start site region 117289
D12Mit78 12 99202733 to 99202936 203 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 78
Gm19898 12 99245671 to 99245921 250 + pseudogene predicted gene, 19898
Gm19920 12 99286053 to 99288579 2526 unclassified gene predicted gene, 19920
Gm20682 12 99292608 to 99296620 4012 - sense intronic lncRNA gene predicted gene 20682
Gm46371 12 99309092 to 99323331 14239 - lncRNA gene predicted gene, 46371
Tssr114661 12 99341015 to 99341056 41 + TSS region transcription start site region 114661
3300002A11Rik 12 99341154 to 99361827 20673 + antisense lncRNA gene RIKEN cDNA 3300002A11 gene
Gm47139 12 99359871 to 99362028 2157 - unclassified gene predicted gene, 47139
Gm47138 12 99366544 to 99369913 3369 - unclassified gene predicted gene, 47138
Tssr117290 12 99376127 to 99376132 5 - TSS region transcription start site region 117290
Gm47132 12 99376596 to 99377248 652 - unclassified gene predicted gene, 47132
Tssr117291 12 99376947 to 99376954 7 - TSS region transcription start site region 117291
Tssr117292 12 99376978 to 99376985 7 - TSS region transcription start site region 117292
Cpgi4976 12 99391912 to 99393808 1896 CpG island CpG island 4976
Tssr117293 12 99392913 to 99392996 83 - TSS region transcription start site region 117293
Tssr117294 12 99393010 to 99393090 80 - TSS region transcription start site region 117294
Tssr117295 12 99412596 to 99412611 15 - TSS region transcription start site region 117295
Tssr117296 12 99420508 to 99420512 4 - TSS region transcription start site region 117296
Tssr117297 12 99434414 to 99434420 6 - TSS region transcription start site region 117297
Tssr117298 12 99445554 to 99445558 4 - TSS region transcription start site region 117298
Tssr117299 12 99457895 to 99457918 23 - TSS region transcription start site region 117299
Tssr114662 12 99514773 to 99514774 1 + TSS region transcription start site region 114662