Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:98710567-99130619

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn21 12 98676741 to 98737405 60664 - protein coding gene protein tyrosine phosphatase, non-receptor type 21
Tssr117273 12 98733906 to 98733936 30 - TSS region transcription start site region 117273
Cpgi4970 12 98734510 to 98734748 238 CpG island CpG island 4970
Tssr117274 12 98734627 to 98734693 66 - TSS region transcription start site region 117274
Cpgi4971 12 98736964 to 98737922 958 CpG island CpG island 4971
Tssr117275 12 98737501 to 98737515 14 - TSS region transcription start site region 117275
Tssr117276 12 98737527 to 98737539 12 - TSS region transcription start site region 117276
Tssr117277 12 98737548 to 98737567 19 - TSS region transcription start site region 117277
Tssr117278 12 98737593 to 98737616 23 - TSS region transcription start site region 117278
Cpgi4972 12 98746716 to 98747755 1039 CpG island CpG island 4972
Tssr114650 12 98746935 to 98747046 111 + TSS region transcription start site region 114650
Zc3h14 12 98746964 to 98787753 40789 + protein coding gene zinc finger CCCH type containing 14
Tssr114651 12 98747461 to 98747467 6 + TSS region transcription start site region 114651
Tssr114652 12 98755006 to 98755011 5 + TSS region transcription start site region 114652
9430031K09Rik 12 98762048 to 98762972 924 + unclassified gene RIKEN cDNA 9430031K09 gene
D230049E03Rik 12 98766105 to 98770355 4250 + unclassified gene RIKEN cDNA D230049E03 gene
Tssr3917 12 98771003 to 98771010 7 + TSS region transcription start site region 3917
Tssr114653 12 98771018 to 98771041 23 + TSS region transcription start site region 114653
Tssr114654 12 98771050 to 98771064 14 + TSS region transcription start site region 114654
Eml5 12 98786805 to 98901484 114679 - protein coding gene echinoderm microtubule associated protein like 5
Gm48062 12 98794448 to 98797069 2621 + unclassified gene predicted gene, 48062
Gm35463 12 98803824 to 98823679 19855 + lncRNA gene predicted gene, 35463
Gm48063 12 98810683 to 98813199 2516 - unclassified gene predicted gene, 48063
Tssr117279 12 98822235 to 98822238 3 - TSS region transcription start site region 117279
A930040O22Rik 12 98831813 to 98832785 972 + unclassified gene RIKEN cDNA A930040O22 gene
Tssr117280 12 98877757 to 98877761 4 - TSS region transcription start site region 117280
Cpgi4973 12 98900429 to 98901720 1291 CpG island CpG island 4973
Tssr117281 12 98901264 to 98901275 11 - TSS region transcription start site region 117281
Tssr117282 12 98901311 to 98901322 11 - TSS region transcription start site region 117282
Tssr117283 12 98901415 to 98901472 57 - TSS region transcription start site region 117283
Tssr117284 12 98901478 to 98901492 14 - TSS region transcription start site region 117284
Cpgi4974 12 98920408 to 98920719 311 CpG island CpG island 4974
Tssr114655 12 98920531 to 98920553 22 + TSS region transcription start site region 114655
Tssr114656 12 98920567 to 98920619 52 + TSS region transcription start site region 114656
Ttc8 12 98920574 to 98983238 62664 + protein coding gene tetratricopeptide repeat domain 8
Tssr114657 12 98920620 to 98920634 14 + TSS region transcription start site region 114657
Tssr114658 12 98920644 to 98920662 18 + TSS region transcription start site region 114658
Tssr114659 12 98950099 to 98950116 17 + TSS region transcription start site region 114659
Gm47109 12 98991340 to 98993009 1669 - lincRNA gene predicted gene, 47109
Tssr117285 12 99011638 to 99011675 37 - TSS region transcription start site region 117285
Gm40554 12 99024263 to 99073006 48743 + lncRNA gene predicted gene, 40554
Gm47116 12 99033500 to 99063458 29958 - lincRNA gene predicted gene, 47116
Tssr114660 12 99047159 to 99047167 8 + TSS region transcription start site region 114660
Rpl30-ps8 12 99047230 to 99047574 344 + pseudogene ribosomal protein L30, pseudogene 8
D12Mit77 12 99066227 to 99066415 188 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 77
Cpgi4975 12 99084233 to 99084585 352 CpG island CpG island 4975