Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:98650078-100103582

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata7 12 98628157 to 98669815 41658 + protein coding gene spermatogenesis associated 7
Gm47372 12 98648938 to 98652481 3543 - unclassified gene predicted gene, 47372
Tssr3916 12 98650762 to 98650771 9 + TSS region transcription start site region 3916
Ptpn21 12 98676741 to 98737405 60664 - protein coding gene protein tyrosine phosphatase, non-receptor type 21
Cpgi4968 12 98677484 to 98677660 176 CpG island CpG island 4968
Tssr117269 12 98683684 to 98683693 9 - TSS region transcription start site region 117269
Tssr117270 12 98683697 to 98683706 9 - TSS region transcription start site region 117270
Tssr117271 12 98683726 to 98683746 20 - TSS region transcription start site region 117271
Tssr117272 12 98683766 to 98683783 17 - TSS region transcription start site region 117272
Cpgi4969 12 98689172 to 98689563 391 CpG island CpG island 4969
Tssr117273 12 98733906 to 98733936 30 - TSS region transcription start site region 117273
Cpgi4970 12 98734510 to 98734748 238 CpG island CpG island 4970
Tssr117274 12 98734627 to 98734693 66 - TSS region transcription start site region 117274
Cpgi4971 12 98736964 to 98737922 958 CpG island CpG island 4971
Tssr117275 12 98737501 to 98737515 14 - TSS region transcription start site region 117275
Tssr117276 12 98737527 to 98737539 12 - TSS region transcription start site region 117276
Tssr117277 12 98737548 to 98737567 19 - TSS region transcription start site region 117277
Tssr117278 12 98737593 to 98737616 23 - TSS region transcription start site region 117278
Cpgi4972 12 98746716 to 98747755 1039 CpG island CpG island 4972
Tssr114650 12 98746935 to 98747046 111 + TSS region transcription start site region 114650
Zc3h14 12 98746964 to 98787753 40789 + protein coding gene zinc finger CCCH type containing 14
Tssr114651 12 98747461 to 98747467 6 + TSS region transcription start site region 114651
Tssr114652 12 98755006 to 98755011 5 + TSS region transcription start site region 114652
9430031K09Rik 12 98762048 to 98762972 924 + unclassified gene RIKEN cDNA 9430031K09 gene
D230049E03Rik 12 98766105 to 98770355 4250 + unclassified gene RIKEN cDNA D230049E03 gene
Tssr3917 12 98771003 to 98771010 7 + TSS region transcription start site region 3917
Tssr114653 12 98771018 to 98771041 23 + TSS region transcription start site region 114653
Tssr114654 12 98771050 to 98771064 14 + TSS region transcription start site region 114654
Eml5 12 98786805 to 98901484 114679 - protein coding gene echinoderm microtubule associated protein like 5
Gm48062 12 98794448 to 98797069 2621 + unclassified gene predicted gene, 48062
Gm35463 12 98803824 to 98823679 19855 + lncRNA gene predicted gene, 35463
Gm48063 12 98810683 to 98813199 2516 - unclassified gene predicted gene, 48063
Tssr117279 12 98822235 to 98822238 3 - TSS region transcription start site region 117279
A930040O22Rik 12 98831813 to 98832785 972 + unclassified gene RIKEN cDNA A930040O22 gene
Tssr117280 12 98877757 to 98877761 4 - TSS region transcription start site region 117280
Cpgi4973 12 98900429 to 98901720 1291 CpG island CpG island 4973
Tssr117281 12 98901264 to 98901275 11 - TSS region transcription start site region 117281
Tssr117282 12 98901311 to 98901322 11 - TSS region transcription start site region 117282
Tssr117283 12 98901415 to 98901472 57 - TSS region transcription start site region 117283
Tssr117284 12 98901478 to 98901492 14 - TSS region transcription start site region 117284
Cpgi4974 12 98920408 to 98920719 311 CpG island CpG island 4974
Tssr114655 12 98920531 to 98920553 22 + TSS region transcription start site region 114655
Tssr114656 12 98920567 to 98920619 52 + TSS region transcription start site region 114656
Ttc8 12 98920574 to 98983238 62664 + protein coding gene tetratricopeptide repeat domain 8
Tssr114657 12 98920620 to 98920634 14 + TSS region transcription start site region 114657
Tssr114658 12 98920644 to 98920662 18 + TSS region transcription start site region 114658
Tssr114659 12 98950099 to 98950116 17 + TSS region transcription start site region 114659
Gm47109 12 98991340 to 98993009 1669 - lincRNA gene predicted gene, 47109
Tssr117285 12 99011638 to 99011675 37 - TSS region transcription start site region 117285
Gm40554 12 99024263 to 99073006 48743 + lncRNA gene predicted gene, 40554
Gm47116 12 99033500 to 99063458 29958 - lincRNA gene predicted gene, 47116
Tssr114660 12 99047159 to 99047167 8 + TSS region transcription start site region 114660
Rpl30-ps8 12 99047230 to 99047574 344 + pseudogene ribosomal protein L30, pseudogene 8
D12Mit77 12 99066227 to 99066415 188 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 77
Cpgi4975 12 99084233 to 99084585 352 CpG island CpG island 4975
4930474N09Rik 12 99161277 to 99162808 1531 - lincRNA gene RIKEN cDNA 4930474N09 gene
Tssr117286 12 99162644 to 99162658 14 - TSS region transcription start site region 117286
Tssr117287 12 99162661 to 99162669 8 - TSS region transcription start site region 117287
Tssr117288 12 99172419 to 99172421 2 - TSS region transcription start site region 117288
Foxn3 12 99190078 to 99563582 373504 - protein coding gene forkhead box N3
Tssr117289 12 99194716 to 99194720 4 - TSS region transcription start site region 117289
D12Mit78 12 99202733 to 99202936 203 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 78
Gm19898 12 99245671 to 99245921 250 + pseudogene predicted gene, 19898
Gm19920 12 99286053 to 99288579 2526 unclassified gene predicted gene, 19920
Gm20682 12 99292608 to 99296620 4012 - sense intronic lncRNA gene predicted gene 20682
Gm46371 12 99309092 to 99323331 14239 - lncRNA gene predicted gene, 46371
Tssr114661 12 99341015 to 99341056 41 + TSS region transcription start site region 114661
3300002A11Rik 12 99341154 to 99361827 20673 + antisense lncRNA gene RIKEN cDNA 3300002A11 gene
Gm47139 12 99359871 to 99362028 2157 - unclassified gene predicted gene, 47139
Gm47138 12 99366544 to 99369913 3369 - unclassified gene predicted gene, 47138
Tssr117290 12 99376127 to 99376132 5 - TSS region transcription start site region 117290
Gm47132 12 99376596 to 99377248 652 - unclassified gene predicted gene, 47132
Tssr117291 12 99376947 to 99376954 7 - TSS region transcription start site region 117291
Tssr117292 12 99376978 to 99376985 7 - TSS region transcription start site region 117292
Cpgi4976 12 99391912 to 99393808 1896 CpG island CpG island 4976
Tssr117293 12 99392913 to 99392996 83 - TSS region transcription start site region 117293
Tssr117294 12 99393010 to 99393090 80 - TSS region transcription start site region 117294
Tssr117295 12 99412596 to 99412611 15 - TSS region transcription start site region 117295
Tssr117296 12 99420508 to 99420512 4 - TSS region transcription start site region 117296
Tssr117297 12 99434414 to 99434420 6 - TSS region transcription start site region 117297
Tssr117298 12 99445554 to 99445558 4 - TSS region transcription start site region 117298
Tssr117299 12 99457895 to 99457918 23 - TSS region transcription start site region 117299
Tssr114662 12 99514773 to 99514774 1 + TSS region transcription start site region 114662
Tssr114663 12 99562815 to 99562819 4 + TSS region transcription start site region 114663
Cpgi4977 12 99563237 to 99563987 750 CpG island CpG island 4977
Tssr117300 12 99563562 to 99563651 89 - TSS region transcription start site region 117300
Tssr117301 12 99563718 to 99563729 11 - TSS region transcription start site region 117301
Gm26839 12 99563841 to 99620038 56197 + bidirectional promoter lncRNA gene predicted gene, 26839
Tssr117302 12 99563903 to 99563917 14 - TSS region transcription start site region 117302
Tssr117303 12 99563919 to 99563935 16 - TSS region transcription start site region 117303
Tssr117304 12 99563956 to 99563959 3 - TSS region transcription start site region 117304
Gm47177 12 99567882 to 99569668 1786 - lincRNA gene predicted gene, 47177
4930556H04Rik 12 99569740 to 99571414 1674 + unclassified gene RIKEN cDNA 4930556H04 gene
Cpgi4978 12 99570171 to 99570386 215 CpG island CpG island 4978
Tssr114664 12 99609200 to 99609210 10 + TSS region transcription start site region 114664
Gm35644 12 99610096 to 99619659 9563 - lncRNA gene predicted gene, 35644
Tssr117305 12 99610278 to 99610303 25 - TSS region transcription start site region 117305
1700064M15Rik 12 99626053 to 99627974 1921 - lincRNA gene RIKEN cDNA 1700064M15 gene
Cpgi4979 12 99627568 to 99628307 739 CpG island CpG island 4979
Tssr117306 12 99627927 to 99627936 9 - TSS region transcription start site region 117306
Tssr117307 12 99627945 to 99627961 16 - TSS region transcription start site region 117307
Tssr117308 12 99627964 to 99627985 21 - TSS region transcription start site region 117308
Gm47196 12 99639716 to 99641924 2208 - unclassified gene predicted gene, 47196
Tssr117309 12 99642682 to 99642692 10 - TSS region transcription start site region 117309
Tssr117310 12 99642714 to 99642723 9 - TSS region transcription start site region 117310
Gm19951 12 99643093 to 99647221 4128 + lincRNA gene predicted gene, 19951
Tssr114665 12 99643094 to 99643097 3 + TSS region transcription start site region 114665
Cpgi4980 12 99644914 to 99645444 530 CpG island CpG island 4980
Tssr114666 12 99645057 to 99645063 6 + TSS region transcription start site region 114666
Tssr114667 12 99645224 to 99645255 31 + TSS region transcription start site region 114667
Tssr114668 12 99645459 to 99645497 38 + TSS region transcription start site region 114668
Tssr114669 12 99645548 to 99645564 16 + TSS region transcription start site region 114669
Tssr114670 12 99647206 to 99647208 2 + TSS region transcription start site region 114670
Tssr114671 12 99687166 to 99687168 2 + TSS region transcription start site region 114671
Efcab11 12 99693045 to 99884439 191394 - protein coding gene EF-hand calcium binding domain 11
Ppiq11 12 99700137 to 99700137 0 QTL prepulse inhibition QTL 11
Gm47208 12 99761351 to 99762254 903 - unclassified gene predicted gene, 47208
Gm19238 12 99804389 to 99805648 1259 - pseudogene predicted gene, 19238
Gm47207 12 99821678 to 99850951 29273 + antisense lncRNA gene predicted gene, 47207
Gm47206 12 99829953 to 99832219 2266 - unclassified gene predicted gene, 47206
Tssr3918 12 99874744 to 99874749 5 - TSS region transcription start site region 3918
Cpgi4981 12 99883117 to 99883637 520 CpG island CpG island 4981
Tssr117311 12 99883401 to 99883428 27 - TSS region transcription start site region 117311
Tssr117312 12 99883429 to 99883460 31 - TSS region transcription start site region 117312
Cpgi4982 12 99884197 to 99885099 902 CpG island CpG island 4982
Tssr114672 12 99884498 to 99884531 33 + TSS region transcription start site region 114672
Tdp1 12 99884517 to 99955219 70702 + protein coding gene tyrosyl-DNA phosphodiesterase 1
Gm40556 12 99884560 to 99886471 1911 + protein coding gene predicted gene, 40556
Gm48147 12 99904928 to 99905278 350 + pseudogene predicted gene, 48147
Cpgi4983 12 99964440 to 99966392 1952 CpG island CpG island 4983
Tssr114673 12 99964513 to 99964524 11 + TSS region transcription start site region 114673
Tssr114674 12 99964526 to 99964539 13 + TSS region transcription start site region 114674
Tssr114675 12 99964670 to 99964697 27 + TSS region transcription start site region 114675
Tssr114676 12 99965179 to 99965280 101 + TSS region transcription start site region 114676
Tssr117313 12 99965649 to 99965675 26 - TSS region transcription start site region 117313
Tssr114677 12 99965753 to 99965788 35 + TSS region transcription start site region 114677
Tssr114678 12 99965792 to 99965817 25 + TSS region transcription start site region 114678
Tssr114679 12 99965927 to 99965946 19 + TSS region transcription start site region 114679
Tssr114680 12 99971665 to 99971686 21 + TSS region transcription start site region 114680
Tssr114681 12 99979915 to 99979927 12 + TSS region transcription start site region 114681
Gm23291 12 99982775 to 99982852 77 - miRNA gene predicted gene, 23291
Tssr114682 12 99999155 to 99999161 6 + TSS region transcription start site region 114682
Tssr114683 12 100003686 to 100003703 17 + TSS region transcription start site region 114683
Tssr114684 12 100007072 to 100007099 27 + TSS region transcription start site region 114684
Tssr114685 12 100010755 to 100010769 14 + TSS region transcription start site region 114685
Tssr114686 12 100044608 to 100044615 7 + TSS region transcription start site region 114686
D12Mit30 12 100056744 to 100056850 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 30
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Kcnk13 12 100062682 to 99964499 -98183 + protein coding gene potassium channel, subfamily K, member 13
Tssr114687 12 100072436 to 100072443 7 + TSS region transcription start site region 114687
4930477G07Rik 12 100076908 to 100097218 20310 - lincRNA gene RIKEN cDNA 4930477G07 gene
9530050K03Rik 12 100079490 to 100080395 905 - pseudogene RIKEN cDNA 9530050K03 gene