Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:98441964-99092753

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnk10 12 98429432 to 98578213 148781 - protein coding gene potassium channel, subfamily K, member 10
5330409N07Rik 12 98444817 to 98448334 3517 - unclassified gene RIKEN cDNA 5330409N07 gene
Tssr114646 12 98445526 to 98445530 4 + TSS region transcription start site region 114646
Tssr114647 12 98445978 to 98446004 26 + TSS region transcription start site region 114647
Gm40893 12 98523844 to 98526583 2739 + antisense lncRNA gene predicted gene, 40893
Tssr117257 12 98528701 to 98528708 7 - TSS region transcription start site region 117257
Tssr117258 12 98528752 to 98528764 12 - TSS region transcription start site region 117258
Tssr117259 12 98572366 to 98572370 4 - TSS region transcription start site region 117259
Cpgi4965 12 98573821 to 98575622 1801 CpG island CpG island 4965
Tssr117260 12 98574539 to 98574558 19 - TSS region transcription start site region 117260
Tssr117261 12 98574574 to 98574586 12 - TSS region transcription start site region 117261
Tssr117262 12 98574685 to 98574719 34 - TSS region transcription start site region 117262
Tssr117263 12 98574728 to 98574741 13 - TSS region transcription start site region 117263
Tssr117264 12 98574748 to 98574775 27 - TSS region transcription start site region 117264
Tssr117265 12 98575035 to 98575048 13 - TSS region transcription start site region 117265
Cpgi4966 12 98577976 to 98578200 224 CpG island CpG island 4966
Tssr117266 12 98578036 to 98578046 10 - TSS region transcription start site region 117266
Tssr117267 12 98578106 to 98578121 15 - TSS region transcription start site region 117267
Gm47346 12 98582364 to 98585976 3612 - unclassified gene predicted gene, 47346
Gm25486 12 98599033 to 98599095 62 + snRNA gene predicted gene, 25486
Tssr117268 12 98606813 to 98606818 5 - TSS region transcription start site region 117268
Cpgi4967 12 98627990 to 98628436 446 CpG island CpG island 4967
Tssr114648 12 98628126 to 98628202 76 + TSS region transcription start site region 114648
Spata7 12 98628157 to 98669815 41658 + protein coding gene spermatogenesis associated 7
Tssr114649 12 98628207 to 98628235 28 + TSS region transcription start site region 114649
Gm47370 12 98642225 to 98644053 1828 + unclassified gene predicted gene, 47370
Gm47372 12 98648938 to 98652481 3543 - unclassified gene predicted gene, 47372
Tssr3916 12 98650762 to 98650771 9 + TSS region transcription start site region 3916
Ptpn21 12 98676741 to 98737405 60664 - protein coding gene protein tyrosine phosphatase, non-receptor type 21
Cpgi4968 12 98677484 to 98677660 176 CpG island CpG island 4968
Tssr117269 12 98683684 to 98683693 9 - TSS region transcription start site region 117269
Tssr117270 12 98683697 to 98683706 9 - TSS region transcription start site region 117270
Tssr117271 12 98683726 to 98683746 20 - TSS region transcription start site region 117271
Tssr117272 12 98683766 to 98683783 17 - TSS region transcription start site region 117272
Cpgi4969 12 98689172 to 98689563 391 CpG island CpG island 4969
Tssr117273 12 98733906 to 98733936 30 - TSS region transcription start site region 117273
Cpgi4970 12 98734510 to 98734748 238 CpG island CpG island 4970
Tssr117274 12 98734627 to 98734693 66 - TSS region transcription start site region 117274
Cpgi4971 12 98736964 to 98737922 958 CpG island CpG island 4971
Tssr117275 12 98737501 to 98737515 14 - TSS region transcription start site region 117275
Tssr117276 12 98737527 to 98737539 12 - TSS region transcription start site region 117276
Tssr117277 12 98737548 to 98737567 19 - TSS region transcription start site region 117277
Tssr117278 12 98737593 to 98737616 23 - TSS region transcription start site region 117278
Cpgi4972 12 98746716 to 98747755 1039 CpG island CpG island 4972
Tssr114650 12 98746935 to 98747046 111 + TSS region transcription start site region 114650
Zc3h14 12 98746964 to 98787753 40789 + protein coding gene zinc finger CCCH type containing 14
Tssr114651 12 98747461 to 98747467 6 + TSS region transcription start site region 114651
Tssr114652 12 98755006 to 98755011 5 + TSS region transcription start site region 114652
9430031K09Rik 12 98762048 to 98762972 924 + unclassified gene RIKEN cDNA 9430031K09 gene
D230049E03Rik 12 98766105 to 98770355 4250 + unclassified gene RIKEN cDNA D230049E03 gene
Tssr3917 12 98771003 to 98771010 7 + TSS region transcription start site region 3917
Tssr114653 12 98771018 to 98771041 23 + TSS region transcription start site region 114653
Tssr114654 12 98771050 to 98771064 14 + TSS region transcription start site region 114654
Eml5 12 98786805 to 98901484 114679 - protein coding gene echinoderm microtubule associated protein like 5
Gm48062 12 98794448 to 98797069 2621 + unclassified gene predicted gene, 48062
Gm35463 12 98803824 to 98823679 19855 + lncRNA gene predicted gene, 35463
Gm48063 12 98810683 to 98813199 2516 - unclassified gene predicted gene, 48063
Tssr117279 12 98822235 to 98822238 3 - TSS region transcription start site region 117279
A930040O22Rik 12 98831813 to 98832785 972 + unclassified gene RIKEN cDNA A930040O22 gene
Tssr117280 12 98877757 to 98877761 4 - TSS region transcription start site region 117280
Cpgi4973 12 98900429 to 98901720 1291 CpG island CpG island 4973
Tssr117281 12 98901264 to 98901275 11 - TSS region transcription start site region 117281
Tssr117282 12 98901311 to 98901322 11 - TSS region transcription start site region 117282
Tssr117283 12 98901415 to 98901472 57 - TSS region transcription start site region 117283
Tssr117284 12 98901478 to 98901492 14 - TSS region transcription start site region 117284
Cpgi4974 12 98920408 to 98920719 311 CpG island CpG island 4974
Tssr114655 12 98920531 to 98920553 22 + TSS region transcription start site region 114655
Tssr114656 12 98920567 to 98920619 52 + TSS region transcription start site region 114656
Ttc8 12 98920574 to 98983238 62664 + protein coding gene tetratricopeptide repeat domain 8
Tssr114657 12 98920620 to 98920634 14 + TSS region transcription start site region 114657
Tssr114658 12 98920644 to 98920662 18 + TSS region transcription start site region 114658
Tssr114659 12 98950099 to 98950116 17 + TSS region transcription start site region 114659
Gm47109 12 98991340 to 98993009 1669 - lincRNA gene predicted gene, 47109
Tssr117285 12 99011638 to 99011675 37 - TSS region transcription start site region 117285
Gm40554 12 99024263 to 99073006 48743 + lncRNA gene predicted gene, 40554
Gm47116 12 99033500 to 99063458 29958 - lincRNA gene predicted gene, 47116
Tssr114660 12 99047159 to 99047167 8 + TSS region transcription start site region 114660
Rpl30-ps8 12 99047230 to 99047574 344 + pseudogene ribosomal protein L30, pseudogene 8
D12Mit77 12 99066227 to 99066415 188 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 77
Cpgi4975 12 99084233 to 99084585 352 CpG island CpG island 4975