Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:9524834-11374987

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700022H16Rik 12 9565236 to 9570585 5349 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H16 gene
Cpgi4404 12 9574353 to 9574899 546 CpG island CpG island 4404
Tssr112771 12 9574437 to 9574448 11 + TSS region transcription start site region 112771
Osr1 12 9574442 to 9581500 7058 + protein coding gene odd-skipped related transcription factor 1
Tssr112772 12 9574456 to 9574476 20 + TSS region transcription start site region 112772
Tssr112773 12 9574478 to 9574497 19 + TSS region transcription start site region 112773
Tssr112774 12 9574511 to 9574527 16 + TSS region transcription start site region 112774
Cpgi4405 12 9579223 to 9579874 651 CpG island CpG island 4405
Cpgi4406 12 9580575 to 9580834 259 CpG island CpG island 4406
Tssr112775 12 9580798 to 9580810 12 + TSS region transcription start site region 112775
Tssr112776 12 9580819 to 9580832 13 + TSS region transcription start site region 112776
Tssr112777 12 9580841 to 9580850 9 + TSS region transcription start site region 112777
Tssr112778 12 9580851 to 9580872 21 + TSS region transcription start site region 112778
Cpgi4407 12 9580985 to 9581428 443 CpG island CpG island 4407
Gm40268 12 9581966 to 9600939 18973 + lncRNA gene predicted gene, 40268
Cpgi4408 12 9584730 to 9585145 415 CpG island CpG island 4408
Tssr112779 12 9585013 to 9585040 27 + TSS region transcription start site region 112779
Gm23979 12 9643690 to 9643817 127 - snoRNA gene predicted gene, 23979
Gm48774 12 9690691 to 9691670 979 + pseudogene predicted gene, 48774
Gm48790 12 9729519 to 9734209 4690 + lincRNA gene predicted gene, 48790
Gm22845 12 9865347 to 9865450 103 - snRNA gene predicted gene, 22845
Gm33734 12 9919594 to 9938813 19219 + lncRNA gene predicted gene, 33734
Cpgi4409 12 9936577 to 9936786 209 CpG island CpG island 4409
Gm46324 12 10077651 to 10082680 5029 + lncRNA gene predicted gene, 46324
Gm5182 12 10152142 to 10158233 6091 + pseudogene predicted gene 5182
Gm48791 12 10177143 to 10224794 47651 + lincRNA gene predicted gene, 48791
Gm48792 12 10219860 to 10222329 2469 - unclassified gene predicted gene, 48792
Gm48793 12 10322866 to 10326643 3777 + pseudogene predicted gene, 48793
Gm48794 12 10368466 to 10368670 204 - pseudogene predicted gene, 48794
Tssr112780 12 10369967 to 10369984 17 + TSS region transcription start site region 112780
Nt5c1b 12 10369973 to 10390175 20202 + protein coding gene 5'-nucleotidase, cytosolic IB
Cpgi4410 12 10374859 to 10375045 186 CpG island CpG island 4410
Cpgi4411 12 10390679 to 10391334 655 CpG island CpG island 4411
Tssr112781 12 10390756 to 10390836 80 + TSS region transcription start site region 112781
Rdh14 12 10390772 to 10395562 4790 + protein coding gene retinol dehydrogenase 14 (all-trans and 9-cis)
Tssr112782 12 10390868 to 10390884 16 + TSS region transcription start site region 112782
Tssr112783 12 10391050 to 10391071 21 + TSS region transcription start site region 112783
Tssr112784 12 10391073 to 10391089 16 + TSS region transcription start site region 112784
Gm38407 12 10446388 to 10531303 84915 + lincRNA gene predicted gene, 38407
Cpgi4412 12 10449338 to 10449558 220 CpG island CpG island 4412
Cpgi4413 12 10449834 to 10449987 153 CpG island CpG island 4413
Gm48886 12 10493500 to 10494199 699 + pseudogene predicted gene, 48886
Gm4928 12 10723794 to 10724587 793 - pseudogene predicted gene 4928
Tssr115726 12 10724094 to 10724119 25 - TSS region transcription start site region 115726
Tglq5 12 10870603 to 10870733 130 QTL triglyceride QTL 5
Femwf9 12 10870603 to 10870733 130 QTL femur work to failure 9
D12Mit182 12 10870603 to 10870733 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 182
Chldq7 12 10870603 to 10870733 130 QTL cholesterol and HDL QTL 7
Pgk1-rs7 12 10898986 to 10900240 1254 - pseudogene phosphoglycerate kinase-1, related sequence-7
Tssr115727 12 10900313 to 10900318 5 - TSS region transcription start site region 115727
Gm48082 12 10990354 to 10994195 3841 + pseudogene predicted gene, 48082
7420701I03Rik 12 11047813 to 11078741 30928 + lincRNA gene RIKEN cDNA 7420701I03 gene
Kcns3 12 11090202 to 11151056 60854 - protein coding gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
Gm48088 12 11099596 to 11100077 481 + pseudogene predicted gene, 48088
Tssr112785 12 11139498 to 11139499 1 + TSS region transcription start site region 112785
Cpgi4414 12 11149216 to 11150980 1764 CpG island CpG island 4414
Tssr115728 12 11150305 to 11150348 43 - TSS region transcription start site region 115728
9530020I12Rik 12 11185993 to 11204502 18509 - lincRNA gene RIKEN cDNA 9530020I12 gene
Cpgi4415 12 11196188 to 11196490 302 CpG island CpG island 4415
Tssr115729 12 11204286 to 11204303 17 - TSS region transcription start site region 115729
Tssr115730 12 11204305 to 11204325 20 - TSS region transcription start site region 115730
Tssr115731 12 11204375 to 11204387 12 - TSS region transcription start site region 115731
D12Mit240 12 11207819 to 11207931 112 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 240
Msgn1 12 11208382 to 11208948 566 - protein coding gene mesogenin 1
Cpgi4416 12 11208445 to 11208786 341 CpG island CpG island 4416
1700034J04Rik 12 11221461 to 11222210 749 - unclassified gene RIKEN cDNA 1700034J04 gene
Gen1 12 11239718 to 11266029 26311 - protein coding gene GEN1, Holliday junction 5' flap endonuclease
Cpgi4417 12 11265401 to 11266864 1463 CpG island CpG island 4417
Tssr115732 12 11265768 to 11265816 48 - TSS region transcription start site region 115732
Tssr112786 12 11265867 to 11265883 16 + TSS region transcription start site region 112786
Smc6 12 11265886 to 11319785 53899 + protein coding gene structural maintenance of chromosomes 6
Tssr112787 12 11266101 to 11266178 77 + TSS region transcription start site region 112787
Tssr112788 12 11266179 to 11266188 9 + TSS region transcription start site region 112788
Tssr112789 12 11266484 to 11266523 39 + TSS region transcription start site region 112789
Tssr112790 12 11266565 to 11266572 7 + TSS region transcription start site region 112790
Tssr112791 12 11276299 to 11276317 18 + TSS region transcription start site region 112791
Tssr112792 12 11279634 to 11279648 14 + TSS region transcription start site region 112792
Tssr112793 12 11279651 to 11279664 13 + TSS region transcription start site region 112793
Tssr112794 12 11279701 to 11279715 14 + TSS region transcription start site region 112794
Tssr112795 12 11280332 to 11280377 45 + TSS region transcription start site region 112795
Tssr112796 12 11282356 to 11282376 20 + TSS region transcription start site region 112796
Tssr112797 12 11289609 to 11289646 37 + TSS region transcription start site region 112797
Tssr112798 12 11295010 to 11295031 21 + TSS region transcription start site region 112798
Tssr112799 12 11297176 to 11297191 15 + TSS region transcription start site region 112799
Mir7675 12 11299887 to 11299944 57 + miRNA gene microRNA 7675
Tssr112800 12 11311567 to 11311571 4 + TSS region transcription start site region 112800
Vsnl1 12 11325242 to 11436613 111371 - protein coding gene visinin-like 1
Tssr115733 12 11325906 to 11325919 13 - TSS region transcription start site region 115733
Tssr112801 12 11326145 to 11326179 34 + TSS region transcription start site region 112801
Tssr115734 12 11326191 to 11326215 24 - TSS region transcription start site region 115734
Tssr115735 12 11326261 to 11326314 53 - TSS region transcription start site region 115735
Tssr115736 12 11326315 to 11326351 36 - TSS region transcription start site region 115736
Tssr115737 12 11326352 to 11326363 11 - TSS region transcription start site region 115737
Tssr115738 12 11326422 to 11326436 14 - TSS region transcription start site region 115738
Tssr115739 12 11326442 to 11326461 19 - TSS region transcription start site region 115739
Tssr115740 12 11326474 to 11326490 16 - TSS region transcription start site region 115740
Tssr115741 12 11326497 to 11326509 12 - TSS region transcription start site region 115741
Tssr115742 12 11332032 to 11332055 23 - TSS region transcription start site region 115742
Tssr115743 12 11332057 to 11332071 14 - TSS region transcription start site region 115743