Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:9401706-14322710

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285 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46323 12 9371426 to 9415113 43687 + lincRNA gene predicted gene, 46323
Gm7099 12 9429547 to 9430100 553 + pseudogene predicted gene 7099
Gm36096 12 9454781 to 9456338 1557 + pseudogene predicted gene, 36096
Gm18696 12 9473101 to 9473374 273 - pseudogene predicted gene, 18696
Tssr112770 12 9485403 to 9485407 4 + TSS region transcription start site region 112770
Gm48762 12 9494005 to 9496908 2903 - lincRNA gene predicted gene, 48762
Gm48764 12 9503584 to 9509637 6053 - lincRNA gene predicted gene, 48764
1700022H16Rik 12 9565236 to 9570585 5349 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H16 gene
Cpgi4404 12 9574353 to 9574899 546 CpG island CpG island 4404
Tssr112771 12 9574437 to 9574448 11 + TSS region transcription start site region 112771
Osr1 12 9574442 to 9581500 7058 + protein coding gene odd-skipped related transcription factor 1
Tssr112772 12 9574456 to 9574476 20 + TSS region transcription start site region 112772
Tssr112773 12 9574478 to 9574497 19 + TSS region transcription start site region 112773
Tssr112774 12 9574511 to 9574527 16 + TSS region transcription start site region 112774
Cpgi4405 12 9579223 to 9579874 651 CpG island CpG island 4405
Cpgi4406 12 9580575 to 9580834 259 CpG island CpG island 4406
Tssr112775 12 9580798 to 9580810 12 + TSS region transcription start site region 112775
Tssr112776 12 9580819 to 9580832 13 + TSS region transcription start site region 112776
Tssr112777 12 9580841 to 9580850 9 + TSS region transcription start site region 112777
Tssr112778 12 9580851 to 9580872 21 + TSS region transcription start site region 112778
Cpgi4407 12 9580985 to 9581428 443 CpG island CpG island 4407
Gm40268 12 9581966 to 9600939 18973 + lncRNA gene predicted gene, 40268
Cpgi4408 12 9584730 to 9585145 415 CpG island CpG island 4408
Tssr112779 12 9585013 to 9585040 27 + TSS region transcription start site region 112779
Gm23979 12 9643690 to 9643817 127 - snoRNA gene predicted gene, 23979
Gm48774 12 9690691 to 9691670 979 + pseudogene predicted gene, 48774
Gm48790 12 9729519 to 9734209 4690 + lincRNA gene predicted gene, 48790
Gm22845 12 9865347 to 9865450 103 - snRNA gene predicted gene, 22845
Gm33734 12 9919594 to 9938813 19219 + lncRNA gene predicted gene, 33734
Cpgi4409 12 9936577 to 9936786 209 CpG island CpG island 4409
Gm46324 12 10077651 to 10082680 5029 + lncRNA gene predicted gene, 46324
Gm5182 12 10152142 to 10158233 6091 + pseudogene predicted gene 5182
Gm48791 12 10177143 to 10224794 47651 + lincRNA gene predicted gene, 48791
Gm48792 12 10219860 to 10222329 2469 - unclassified gene predicted gene, 48792
Gm48793 12 10322866 to 10326643 3777 + pseudogene predicted gene, 48793
Gm48794 12 10368466 to 10368670 204 - pseudogene predicted gene, 48794
Tssr112780 12 10369967 to 10369984 17 + TSS region transcription start site region 112780
Nt5c1b 12 10369973 to 10390175 20202 + protein coding gene 5'-nucleotidase, cytosolic IB
Cpgi4410 12 10374859 to 10375045 186 CpG island CpG island 4410
Cpgi4411 12 10390679 to 10391334 655 CpG island CpG island 4411
Tssr112781 12 10390756 to 10390836 80 + TSS region transcription start site region 112781
Rdh14 12 10390772 to 10395562 4790 + protein coding gene retinol dehydrogenase 14 (all-trans and 9-cis)
Tssr112782 12 10390868 to 10390884 16 + TSS region transcription start site region 112782
Tssr112783 12 10391050 to 10391071 21 + TSS region transcription start site region 112783
Tssr112784 12 10391073 to 10391089 16 + TSS region transcription start site region 112784
Gm38407 12 10446388 to 10531303 84915 + lincRNA gene predicted gene, 38407
Cpgi4412 12 10449338 to 10449558 220 CpG island CpG island 4412
Cpgi4413 12 10449834 to 10449987 153 CpG island CpG island 4413
Gm48886 12 10493500 to 10494199 699 + pseudogene predicted gene, 48886
Gm4928 12 10723794 to 10724587 793 - pseudogene predicted gene 4928
Tssr115726 12 10724094 to 10724119 25 - TSS region transcription start site region 115726
Femwf9 12 10870603 to 10870733 130 QTL femur work to failure 9
Chldq7 12 10870603 to 10870733 130 QTL cholesterol and HDL QTL 7
D12Mit182 12 10870603 to 10870733 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 182
Tglq5 12 10870603 to 10870733 130 QTL triglyceride QTL 5
Pgk1-rs7 12 10898986 to 10900240 1254 - pseudogene phosphoglycerate kinase-1, related sequence-7
Tssr115727 12 10900313 to 10900318 5 - TSS region transcription start site region 115727
Gm48082 12 10990354 to 10994195 3841 + pseudogene predicted gene, 48082
7420701I03Rik 12 11047813 to 11078741 30928 + lincRNA gene RIKEN cDNA 7420701I03 gene
Kcns3 12 11090202 to 11151056 60854 - protein coding gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
Gm48088 12 11099596 to 11100077 481 + pseudogene predicted gene, 48088
Tssr112785 12 11139498 to 11139499 1 + TSS region transcription start site region 112785
Cpgi4414 12 11149216 to 11150980 1764 CpG island CpG island 4414
Tssr115728 12 11150305 to 11150348 43 - TSS region transcription start site region 115728
9530020I12Rik 12 11185993 to 11204502 18509 - lincRNA gene RIKEN cDNA 9530020I12 gene
Cpgi4415 12 11196188 to 11196490 302 CpG island CpG island 4415
Tssr115729 12 11204286 to 11204303 17 - TSS region transcription start site region 115729
Tssr115730 12 11204305 to 11204325 20 - TSS region transcription start site region 115730
Tssr115731 12 11204375 to 11204387 12 - TSS region transcription start site region 115731
D12Mit240 12 11207819 to 11207931 112 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 240
Msgn1 12 11208382 to 11208948 566 - protein coding gene mesogenin 1
Cpgi4416 12 11208445 to 11208786 341 CpG island CpG island 4416
1700034J04Rik 12 11221461 to 11222210 749 - unclassified gene RIKEN cDNA 1700034J04 gene
Gen1 12 11239718 to 11266029 26311 - protein coding gene GEN1, Holliday junction 5' flap endonuclease
Cpgi4417 12 11265401 to 11266864 1463 CpG island CpG island 4417
Tssr115732 12 11265768 to 11265816 48 - TSS region transcription start site region 115732
Tssr112786 12 11265867 to 11265883 16 + TSS region transcription start site region 112786
Smc6 12 11265886 to 11319785 53899 + protein coding gene structural maintenance of chromosomes 6
Tssr112787 12 11266101 to 11266178 77 + TSS region transcription start site region 112787
Tssr112788 12 11266179 to 11266188 9 + TSS region transcription start site region 112788
Tssr112789 12 11266484 to 11266523 39 + TSS region transcription start site region 112789
Tssr112790 12 11266565 to 11266572 7 + TSS region transcription start site region 112790
Tssr112791 12 11276299 to 11276317 18 + TSS region transcription start site region 112791
Tssr112792 12 11279634 to 11279648 14 + TSS region transcription start site region 112792
Tssr112793 12 11279651 to 11279664 13 + TSS region transcription start site region 112793
Tssr112794 12 11279701 to 11279715 14 + TSS region transcription start site region 112794
Tssr112795 12 11280332 to 11280377 45 + TSS region transcription start site region 112795
Tssr112796 12 11282356 to 11282376 20 + TSS region transcription start site region 112796
Tssr112797 12 11289609 to 11289646 37 + TSS region transcription start site region 112797
Tssr112798 12 11295010 to 11295031 21 + TSS region transcription start site region 112798
Tssr112799 12 11297176 to 11297191 15 + TSS region transcription start site region 112799
Mir7675 12 11299887 to 11299944 57 + miRNA gene microRNA 7675
Tssr112800 12 11311567 to 11311571 4 + TSS region transcription start site region 112800
Vsnl1 12 11325242 to 11436613 111371 - protein coding gene visinin-like 1
Tssr115733 12 11325906 to 11325919 13 - TSS region transcription start site region 115733
Tssr112801 12 11326145 to 11326179 34 + TSS region transcription start site region 112801
Tssr115734 12 11326191 to 11326215 24 - TSS region transcription start site region 115734
Tssr115735 12 11326261 to 11326314 53 - TSS region transcription start site region 115735
Tssr115736 12 11326315 to 11326351 36 - TSS region transcription start site region 115736
Tssr115737 12 11326352 to 11326363 11 - TSS region transcription start site region 115737
Tssr115738 12 11326422 to 11326436 14 - TSS region transcription start site region 115738
Tssr115739 12 11326442 to 11326461 19 - TSS region transcription start site region 115739
Tssr115740 12 11326474 to 11326490 16 - TSS region transcription start site region 115740
Tssr115741 12 11326497 to 11326509 12 - TSS region transcription start site region 115741
Tssr115742 12 11332032 to 11332055 23 - TSS region transcription start site region 115742
Tssr115743 12 11332057 to 11332071 14 - TSS region transcription start site region 115743
Tssr115744 12 11386872 to 11386888 16 - TSS region transcription start site region 115744
Tssr115745 12 11435638 to 11435653 15 - TSS region transcription start site region 115745
Tssr3791 12 11436475 to 11436487 12 - TSS region transcription start site region 3791
Cpgi4418 12 11436489 to 11436772 283 CpG island CpG island 4418
Tssr115746 12 11436498 to 11436509 11 - TSS region transcription start site region 115746
Tssr3792 12 11436518 to 11436540 22 - TSS region transcription start site region 3792
Tssr115747 12 11436550 to 11436603 53 - TSS region transcription start site region 115747
Tssr115748 12 11436607 to 11436618 11 - TSS region transcription start site region 115748
Tssr3793 12 11436711 to 11436720 9 - TSS region transcription start site region 3793
Cpgi4419 12 11438020 to 11438277 257 CpG island CpG island 4419
Tssr112802 12 11438191 to 11438238 47 + TSS region transcription start site region 112802
4930511A02Rik 12 11438233 to 11444812 6579 + lincRNA gene RIKEN cDNA 4930511A02 gene
Cpgi4420 12 11455744 to 11456419 675 CpG island CpG island 4420
Tssr112803 12 11456052 to 11456058 6 + TSS region transcription start site region 112803
Rad51ap2 12 11456079 to 11462928 6849 + protein coding gene RAD51 associated protein 2
D12Mit168 12 11465395 to 11465581 186 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 168
Gm47807 12 11499295 to 11499892 597 + pseudogene predicted gene, 47807
Gm47808 12 11507226 to 11512390 5164 - unclassified non-coding RNA gene predicted gene, 47808
Tcq14 12 11610000 to 97210000 85600000 QTL total cholesterol QTL 14
Gm4803 12 11665771 to 11667049 1278 - pseudogene predicted gene 4803
Gm23781 12 11688697 to 11689004 307 - unclassified non-coding RNA gene predicted gene, 23781
Gm47821 12 11698868 to 11700546 1678 - unclassified gene predicted gene, 47821
Gm47822 12 11701306 to 11701678 372 - unclassified gene predicted gene, 47822
Gm6867 12 11760447 to 11760871 424 - pseudogene predicted gene 6867
Gm47833 12 11781535 to 11792951 11416 + lincRNA gene predicted gene, 47833
Tssr112804 12 11802132 to 11802133 1 + TSS region transcription start site region 112804
Gm34237 12 11826706 to 11897710 71004 + lincRNA gene predicted gene, 34237
Cpgi4421 12 11881518 to 11881823 305 CpG island CpG island 4421
Tubb2a-ps2 12 11882196 to 11882899 703 - pseudogene tubulin, beta 2a, pseudogene 2
Tssr115749 12 11882392 to 11882417 25 - TSS region transcription start site region 115749
Tssr112805 12 11882466 to 11882487 21 + TSS region transcription start site region 112805
Gm25610 12 12013623 to 12013751 128 + snoRNA gene predicted gene, 25610
Tssr112806 12 12022997 to 12023001 4 + TSS region transcription start site region 112806
Gm4294 12 12023045 to 12023658 613 + pseudogene predicted gene 4294
Gm46334 12 12031934 to 12039401 7467 + lncRNA gene predicted gene, 46334
Gm18240 12 12097732 to 12123271 25539 - pseudogene predicted gene, 18240
Gm26171 12 12106737 to 12106867 130 + rRNA gene predicted gene, 26171
Gm34348 12 12145208 to 12147695 2487 - lncRNA gene predicted gene, 34348
Tssr3794 12 12170538 to 12170540 2 - TSS region transcription start site region 3794
Tssr115750 12 12177311 to 12177331 20 - TSS region transcription start site region 115750
Gm40838 12 12237189 to 12254299 17110 + lncRNA gene predicted gene, 40838
Cpgi4422 12 12261806 to 12262771 965 CpG island CpG island 4422
Fam49a 12 12262133 to 12376363 114230 + protein coding gene family with sequence similarity 49, member A
Tssr112807 12 12262139 to 12262157 18 + TSS region transcription start site region 112807
Tssr112808 12 12262164 to 12262191 27 + TSS region transcription start site region 112808
Gm34407 12 12284555 to 12289464 4909 - lncRNA gene predicted gene, 34407
9530022J15Rik 12 12293444 to 12294051 607 unclassified gene RIKEN cDNA 9530022J15 gene
D12Mit56 12 12302608 to 12302754 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 56
Cpgi4423 12 12324380 to 12324714 334 CpG island CpG island 4423
Tssr112809 12 12342174 to 12342178 4 + TSS region transcription start site region 112809
Tssr112810 12 12345312 to 12345320 8 + TSS region transcription start site region 112810
4921511I17Rik 12 12351522 to 12392475 40953 - antisense lncRNA gene RIKEN cDNA 4921511I17 gene
Cpgi4424 12 12420933 to 12421312 379 CpG island CpG island 4424
Gm34489 12 12421041 to 12524489 103448 + lncRNA gene predicted gene, 34489
Tssr115751 12 12491873 to 12491878 5 - TSS region transcription start site region 115751
Tssr115752 12 12492013 to 12492022 9 - TSS region transcription start site region 115752
Tssr115753 12 12492253 to 12492260 7 - TSS region transcription start site region 115753
Tssr115754 12 12492762 to 12492772 10 - TSS region transcription start site region 115754
Tssr115755 12 12492843 to 12492881 38 - TSS region transcription start site region 115755
Tssr115756 12 12492906 to 12492913 7 - TSS region transcription start site region 115756
Tssr115757 12 12493102 to 12493117 15 - TSS region transcription start site region 115757
Tssr115758 12 12493119 to 12493128 9 - TSS region transcription start site region 115758
Tssr115759 12 12546624 to 12546635 11 - TSS region transcription start site region 115759
Tssr112811 12 12547912 to 12547944 32 + TSS region transcription start site region 112811
Tssr112812 12 12580917 to 12580951 34 + TSS region transcription start site region 112812
Gm34637 12 12667732 to 12669917 2185 - lncRNA gene predicted gene, 34637
Gm27952 12 12682514 to 12682618 104 - rRNA gene predicted gene, 27952
Gm34696 12 12688361 to 12704861 16500 - lncRNA gene predicted gene, 34696
Gm25538 12 12700039 to 12700145 106 + snRNA gene predicted gene, 25538
Gm40269 12 12708261 to 12711956 3695 - lncRNA gene predicted gene, 40269
Gm40270 12 12722319 to 12725258 2939 - lncRNA gene predicted gene, 40270
3732407C23Rik 12 12722861 to 12726400 3539 + unclassified gene RIKEN cDNA 3732407C23 gene
D12Ertd208e 12 12735085 to 12735328 243 DNA segment DNA segment, Chr 12, ERATO Doi 208, expressed
Gm35104 12 12765994 to 12774296 8302 + lncRNA gene predicted gene, 35104
Tssr112813 12 12766009 to 12766020 11 + TSS region transcription start site region 112813
Tssr112814 12 12766028 to 12766031 3 + TSS region transcription start site region 112814
Tssr112815 12 12784669 to 12784680 11 + TSS region transcription start site region 112815
Platr19 12 12787985 to 12794285 6300 + lincRNA gene pluripotency associated transcript 19
Tssr115760 12 12788667 to 12788681 14 - TSS region transcription start site region 115760
Tssr115761 12 12788694 to 12788704 10 - TSS region transcription start site region 115761
Gm35155 12 12810723 to 12829248 18525 + lncRNA gene predicted gene, 35155
Tssr112816 12 12828035 to 12828069 34 + TSS region transcription start site region 112816
Tssr115762 12 12850714 to 12850723 9 - TSS region transcription start site region 115762
Gm48187 12 12865570 to 12874689 9119 + lincRNA gene predicted gene, 48187
4930519A11Rik 12 12902720 to 12907378 4658 + lincRNA gene RIKEN cDNA 4930519A11 gene
Cpgi4425 12 12904491 to 12905032 541 CpG island CpG island 4425
Tssr112817 12 12909397 to 12909409 12 + TSS region transcription start site region 112817
Tssr112818 12 12909412 to 12909431 19 + TSS region transcription start site region 112818
Gm40271 12 12909428 to 12913029 3601 + lincRNA gene predicted gene, 40271
Rpl36-ps3 12 12912022 to 12912336 314 + pseudogene ribosomal protein L36, pseudogene 3
Mycn 12 12936093 to 12941836 5743 - protein coding gene v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
Tssr115763 12 12936944 to 12936948 4 - TSS region transcription start site region 115763
Cpgi4426 12 12937030 to 12937650 620 CpG island CpG island 4426
Tssr115764 12 12937270 to 12937281 11 - TSS region transcription start site region 115764