Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:91587888-93997890

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2a1 12 91555262 to 91590487 35225 - protein coding gene general transcription factor II A, 1
Cpgi4955 12 91588222 to 91590635 2413 CpG island CpG island 4955
Tssr117213 12 91588348 to 91588374 26 - TSS region transcription start site region 117213
Tssr114590 12 91588478 to 91588493 15 + TSS region transcription start site region 114590
Tssr114591 12 91588501 to 91588519 18 + TSS region transcription start site region 114591
Tssr114592 12 91588550 to 91588563 13 + TSS region transcription start site region 114592
Tssr117214 12 91589597 to 91589620 23 - TSS region transcription start site region 117214
Tssr117215 12 91589699 to 91589702 3 - TSS region transcription start site region 117215
Tssr117216 12 91589953 to 91589968 15 - TSS region transcription start site region 117216
Tssr117217 12 91589981 to 91589992 11 - TSS region transcription start site region 117217
Tssr117218 12 91590032 to 91590056 24 - TSS region transcription start site region 117218
Tssr114593 12 91590240 to 91590252 12 + TSS region transcription start site region 114593
Gm47804 12 91615896 to 91617677 1781 - lincRNA gene predicted gene, 47804
Ston2 12 91633009 to 91786436 153427 - protein coding gene stonin 2
Tssr117219 12 91635913 to 91635917 4 - TSS region transcription start site region 117219
Cpgi4956 12 91647402 to 91648522 1120 CpG island CpG island 4956
Tssr114594 12 91667002 to 91667017 15 + TSS region transcription start site region 114594
Tssr114595 12 91668784 to 91668794 10 + TSS region transcription start site region 114595
Gm8378 12 91674812 to 91686113 11301 - sense intronic lncRNA gene predicted gene 8378
D12Mit179 12 91675705 to 91675853 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 179
Gm16876 12 91681754 to 91687960 6206 + antisense lncRNA gene predicted gene, 16876
Tssr117220 12 91686089 to 91686104 15 - TSS region transcription start site region 117220
Tssr117221 12 91686105 to 91686149 44 - TSS region transcription start site region 117221
Tssr114596 12 91695022 to 91695042 20 + TSS region transcription start site region 114596
Tssr117222 12 91696380 to 91696384 4 - TSS region transcription start site region 117222
Tssr117223 12 91745954 to 91745977 23 - TSS region transcription start site region 117223
Tssr117224 12 91746020 to 91746089 69 - TSS region transcription start site region 117224
Gm34718 12 91756833 to 91757686 853 + lncRNA gene predicted gene, 34718
Tssr114597 12 91757023 to 91757036 13 + TSS region transcription start site region 114597
Tssr114598 12 91757268 to 91757274 6 + TSS region transcription start site region 114598
Gm2347 12 91757271 to 91758651 1380 protein coding gene predicted gene 2347
Cpgi4957 12 91778483 to 91779448 965 CpG island CpG island 4957
Tssr117225 12 91779129 to 91779144 15 - TSS region transcription start site region 117225
Tssr117226 12 91788333 to 91788343 10 - TSS region transcription start site region 117226
Tssr117227 12 91788366 to 91788376 10 - TSS region transcription start site region 117227
Gm22015 12 91791610 to 91791674 64 - miRNA gene predicted gene, 22015
Tssr117228 12 91804371 to 91804376 5 - TSS region transcription start site region 117228
Sel1l 12 91806043 to 91849157 43114 - protein coding gene sel-1 suppressor of lin-12-like (C. elegans)
D12Mit259 12 91846584 to 91846708 124 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 259
Cpgi4958 12 91848551 to 91849477 926 CpG island CpG island 4958
Tssr117229 12 91849081 to 91849154 73 - TSS region transcription start site region 117229
Gm21051 12 91870143 to 91871830 1687 - pseudogene predicted gene, 21051
Gm18621 12 91872965 to 91873643 678 - pseudogene predicted gene, 18621
Rpl31-ps1 12 91890896 to 91891273 377 - pseudogene ribosomal protein L31, pseudogene 1
Gm21614 12 91968399 to 91969577 1178 - pseudogene predicted gene, 21614
D12Jpk1 12 92001088 to 92001225 137 DNA segment DNA segment, Chr 12, Japan, Kominami 1
Tssr114599 12 92005561 to 92005565 4 + TSS region transcription start site region 114599
Gm47984 12 92008604 to 92009175 571 - pseudogene predicted gene, 47984
Gm40548 12 92010419 to 92012411 1992 + lincRNA gene predicted gene, 40548
Gm40598 12 92160893 to 92161439 546 - pseudogene predicted gene, 40598
Gm6841 12 92219377 to 92219974 597 + pseudogene predicted gene 6841
Gm18500 12 92473142 to 92473961 819 - pseudogene predicted gene, 18500
D12Mit163 12 92584543 to 92584689 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 163
D12Mit15 12 92678550 to 92678771 221 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 15
Tssr114600 12 92782526 to 92782530 4 + TSS region transcription start site region 114600
Tssr117230 12 92792888 to 92792890 2 - TSS region transcription start site region 117230
Tssr114601 12 92809558 to 92809607 49 + TSS region transcription start site region 114601
Tssr114602 12 92809670 to 92809681 11 + TSS region transcription start site region 114602
Gm40902 12 92876966 to 92885166 8200 - protein coding gene predicted gene, 40902
Gm40892 12 92885583 to 92894950 9367 - protein coding gene predicted gene, 40892
Gm47998 12 92997765 to 92998151 386 - pseudogene predicted gene, 47998
Gm34869 12 93210460 to 93283662 73202 + lncRNA gene predicted gene, 34869
Tssr117231 12 93273736 to 93273746 10 - TSS region transcription start site region 117231
4930559C10Rik 12 93416458 to 93444823 28365 - lincRNA gene RIKEN cDNA 4930559C10 gene
Tssr117232 12 93444857 to 93444862 5 - TSS region transcription start site region 117232
Gm21007 12 93716420 to 93716745 325 + pseudogene predicted gene, 21007
Gm23249 12 93746502 to 93746662 160 + snRNA gene predicted gene, 23249
Mir8099-2 12 93927338 to 93927464 126 + miRNA gene microRNA 8099-2
Gm9726 12 93927993 to 93928670 677 - pseudogene predicted gene 9726