Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:90930648-100046850

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415 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcq14 12 11610000 to 97210000 85600000 QTL total cholesterol QTL 14
4930544I03Rik 12 90753208 to 90969798 216590 - lincRNA gene RIKEN cDNA 4930544I03 gene
Gm47688 12 90938235 to 90938382 147 - pseudogene predicted gene, 47688
Tssr117194 12 90969781 to 90969790 9 - TSS region transcription start site region 117194
Tssr117195 12 90969798 to 90969811 13 - TSS region transcription start site region 117195
Tssr114583 12 90969894 to 90969904 10 + TSS region transcription start site region 114583
1700105G05Rik 12 90969949 to 90971518 1569 + lincRNA gene RIKEN cDNA 1700105G05 gene
Tssr114584 12 90972845 to 90972855 10 + TSS region transcription start site region 114584
Gm26477 12 90981225 to 90981547 322 + unclassified non-coding RNA gene predicted gene, 26477
Cep128 12 90998492 to 91384409 385917 - protein coding gene centrosomal protein 128
Tssr117196 12 91030070 to 91030103 33 - TSS region transcription start site region 117196
Tssr117197 12 91040583 to 91040614 31 - TSS region transcription start site region 117197
5430427M07Rik 12 91045848 to 91056636 10788 + antisense lncRNA gene RIKEN cDNA 5430427M07 gene
Tssr117198 12 91063375 to 91063389 14 - TSS region transcription start site region 117198
Tssr117199 12 91099710 to 91099715 5 - TSS region transcription start site region 117199
Tssr117200 12 91110252 to 91110255 3 - TSS region transcription start site region 117200
Gm44370 12 91123252 to 91123363 111 + miRNA gene predicted gene, 44370
Gm18968 12 91142787 to 91143648 861 + pseudogene predicted gene, 18968
Gm47742 12 91159861 to 91160273 412 + pseudogene predicted gene, 47742
Tssr117201 12 91215768 to 91215772 4 - TSS region transcription start site region 117201
D12Mit47 12 91217169 to 91217324 155 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 47
Tssr117202 12 91266056 to 91266059 3 - TSS region transcription start site region 117202
D12Mit194 12 91287446 to 91287553 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 194
Gm18388 12 91323706 to 91324225 519 + pseudogene predicted gene, 18388
Tssr117203 12 91330219 to 91330222 3 - TSS region transcription start site region 117203
Tssr3912 12 91357332 to 91357338 6 - TSS region transcription start site region 3912
Cpgi4952 12 91383961 to 91384605 644 CpG island CpG island 4952
Tssr117204 12 91384311 to 91384336 25 - TSS region transcription start site region 117204
Tssr117205 12 91384346 to 91384360 14 - TSS region transcription start site region 117205
Tssr117206 12 91384370 to 91384397 27 - TSS region transcription start site region 117206
Tssr117207 12 91384403 to 91384430 27 - TSS region transcription start site region 117207
Cpgi4953 12 91400383 to 91401218 835 CpG island CpG island 4953
Tssr114585 12 91400438 to 91400452 14 + TSS region transcription start site region 114585
Tssr114586 12 91400466 to 91400477 11 + TSS region transcription start site region 114586
Tssr114587 12 91400990 to 91401022 32 + TSS region transcription start site region 114587
Tshr 12 91400993 to 91540509 139516 + protein coding gene thyroid stimulating hormone receptor
Tssr114588 12 91401024 to 91401038 14 + TSS region transcription start site region 114588
Tssr114589 12 91404022 to 91404053 31 + TSS region transcription start site region 114589
Gm18827 12 91482053 to 91482839 786 + pseudogene predicted gene, 18827
D12Mit119 12 91509807 to 91509956 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 119
D12Mit118 12 91512194 to 91512321 127 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 118
Gm40541 12 91534090 to 91537158 3068 - lncRNA gene predicted gene, 40541
Cpgi4954 12 91537713 to 91538033 320 CpG island CpG island 4954
Gtf2a1 12 91555262 to 91590487 35225 - protein coding gene general transcription factor II A, 1
Tssr117208 12 91556727 to 91556736 9 - TSS region transcription start site region 117208
Tssr117209 12 91557006 to 91557027 21 - TSS region transcription start site region 117209
Tssr117210 12 91558018 to 91558039 21 - TSS region transcription start site region 117210
Tssr117211 12 91571839 to 91571842 3 - TSS region transcription start site region 117211
Gm25776 12 91573430 to 91573572 142 - snoRNA gene predicted gene, 25776
Tssr117212 12 91573569 to 91573572 3 - TSS region transcription start site region 117212
Cpgi4955 12 91588222 to 91590635 2413 CpG island CpG island 4955
Tssr117213 12 91588348 to 91588374 26 - TSS region transcription start site region 117213
Tssr114590 12 91588478 to 91588493 15 + TSS region transcription start site region 114590
Tssr114591 12 91588501 to 91588519 18 + TSS region transcription start site region 114591
Tssr114592 12 91588550 to 91588563 13 + TSS region transcription start site region 114592
Tssr117214 12 91589597 to 91589620 23 - TSS region transcription start site region 117214
Tssr117215 12 91589699 to 91589702 3 - TSS region transcription start site region 117215
Tssr117216 12 91589953 to 91589968 15 - TSS region transcription start site region 117216
Tssr117217 12 91589981 to 91589992 11 - TSS region transcription start site region 117217
Tssr117218 12 91590032 to 91590056 24 - TSS region transcription start site region 117218
Tssr114593 12 91590240 to 91590252 12 + TSS region transcription start site region 114593
Gm47804 12 91615896 to 91617677 1781 - lincRNA gene predicted gene, 47804
Ston2 12 91633009 to 91786436 153427 - protein coding gene stonin 2
Tssr117219 12 91635913 to 91635917 4 - TSS region transcription start site region 117219
Cpgi4956 12 91647402 to 91648522 1120 CpG island CpG island 4956
Tssr114594 12 91667002 to 91667017 15 + TSS region transcription start site region 114594
Tssr114595 12 91668784 to 91668794 10 + TSS region transcription start site region 114595
Gm8378 12 91674812 to 91686113 11301 - sense intronic lncRNA gene predicted gene 8378
D12Mit179 12 91675705 to 91675853 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 179
Gm16876 12 91681754 to 91687960 6206 + antisense lncRNA gene predicted gene, 16876
Tssr117220 12 91686089 to 91686104 15 - TSS region transcription start site region 117220
Tssr117221 12 91686105 to 91686149 44 - TSS region transcription start site region 117221
Tssr114596 12 91695022 to 91695042 20 + TSS region transcription start site region 114596
Tssr117222 12 91696380 to 91696384 4 - TSS region transcription start site region 117222
Tssr117223 12 91745954 to 91745977 23 - TSS region transcription start site region 117223
Tssr117224 12 91746020 to 91746089 69 - TSS region transcription start site region 117224
Gm34718 12 91756833 to 91757686 853 + lncRNA gene predicted gene, 34718
Tssr114597 12 91757023 to 91757036 13 + TSS region transcription start site region 114597
Tssr114598 12 91757268 to 91757274 6 + TSS region transcription start site region 114598
Gm2347 12 91757271 to 91758651 1380 protein coding gene predicted gene 2347
Cpgi4957 12 91778483 to 91779448 965 CpG island CpG island 4957
Tssr117225 12 91779129 to 91779144 15 - TSS region transcription start site region 117225
Tssr117226 12 91788333 to 91788343 10 - TSS region transcription start site region 117226
Tssr117227 12 91788366 to 91788376 10 - TSS region transcription start site region 117227
Gm22015 12 91791610 to 91791674 64 - miRNA gene predicted gene, 22015
Tssr117228 12 91804371 to 91804376 5 - TSS region transcription start site region 117228
Sel1l 12 91806043 to 91849157 43114 - protein coding gene sel-1 suppressor of lin-12-like (C. elegans)
D12Mit259 12 91846584 to 91846708 124 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 259
Cpgi4958 12 91848551 to 91849477 926 CpG island CpG island 4958
Tssr117229 12 91849081 to 91849154 73 - TSS region transcription start site region 117229
Gm21051 12 91870143 to 91871830 1687 - pseudogene predicted gene, 21051
Gm18621 12 91872965 to 91873643 678 - pseudogene predicted gene, 18621
Rpl31-ps1 12 91890896 to 91891273 377 - pseudogene ribosomal protein L31, pseudogene 1
Gm21614 12 91968399 to 91969577 1178 - pseudogene predicted gene, 21614
D12Jpk1 12 92001088 to 92001225 137 DNA segment DNA segment, Chr 12, Japan, Kominami 1
Tssr114599 12 92005561 to 92005565 4 + TSS region transcription start site region 114599
Gm47984 12 92008604 to 92009175 571 - pseudogene predicted gene, 47984
Gm40548 12 92010419 to 92012411 1992 + lincRNA gene predicted gene, 40548
Gm40598 12 92160893 to 92161439 546 - pseudogene predicted gene, 40598
Gm6841 12 92219377 to 92219974 597 + pseudogene predicted gene 6841
Gm18500 12 92473142 to 92473961 819 - pseudogene predicted gene, 18500
D12Mit163 12 92584543 to 92584689 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 163
D12Mit15 12 92678550 to 92678771 221 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 15
Tssr114600 12 92782526 to 92782530 4 + TSS region transcription start site region 114600
Tssr117230 12 92792888 to 92792890 2 - TSS region transcription start site region 117230
Tssr114601 12 92809558 to 92809607 49 + TSS region transcription start site region 114601
Tssr114602 12 92809670 to 92809681 11 + TSS region transcription start site region 114602
Gm40902 12 92876966 to 92885166 8200 - protein coding gene predicted gene, 40902
Gm40892 12 92885583 to 92894950 9367 - protein coding gene predicted gene, 40892
Gm47998 12 92997765 to 92998151 386 - pseudogene predicted gene, 47998
Gm34869 12 93210460 to 93283662 73202 + lncRNA gene predicted gene, 34869
Tssr117231 12 93273736 to 93273746 10 - TSS region transcription start site region 117231
4930559C10Rik 12 93416458 to 93444823 28365 - lincRNA gene RIKEN cDNA 4930559C10 gene
Tssr117232 12 93444857 to 93444862 5 - TSS region transcription start site region 117232
Gm21007 12 93716420 to 93716745 325 + pseudogene predicted gene, 21007
Gm23249 12 93746502 to 93746662 160 + snRNA gene predicted gene, 23249
Mir8099-2 12 93927338 to 93927464 126 + miRNA gene microRNA 8099-2
Gm9726 12 93927993 to 93928670 677 - pseudogene predicted gene 9726
Gm7119 12 94001287 to 94001981 694 - pseudogene predicted gene 7119
Tssr114603 12 94055311 to 94055316 5 + TSS region transcription start site region 114603
Gm18749 12 94059010 to 94059686 676 - pseudogene predicted gene, 18749
D12Dcr10 12 94321928 to 94322023 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 10
Ppiq10a 12 94545446 to 94545446 0 QTL prepulse inhibition QTL 10a
Tssr117233 12 94652176 to 94652180 4 - TSS region transcription start site region 117233
Gm18504 12 94757575 to 94758503 928 + pseudogene predicted gene, 18504
Gm48011 12 94814075 to 94814481 406 - pseudogene predicted gene, 48011
Gm4808 12 94914480 to 94915682 1202 - pseudogene predicted gene 4808
D12Mit165.3 12 95041611 to 95041745 134 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 165.3
D12Mit165 12 95041756 to 95041905 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 165
Tssr114604 12 95162838 to 95162839 1 + TSS region transcription start site region 114604
D12Ertd247e 12 95236592 to 95236814 222 DNA segment DNA segment, Chr 12, ERATO Doi 247, expressed
Tssr117234 12 95292718 to 95292725 7 - TSS region transcription start site region 117234
Gm48013 12 95324907 to 95325319 412 + pseudogene predicted gene, 48013
Gm26055 12 95378845 to 95378951 106 - snRNA gene predicted gene, 26055
Gm40551 12 95530025 to 95558892 28867 - lncRNA gene predicted gene, 40551
Gm22246 12 95619818 to 95619924 106 + snRNA gene predicted gene, 22246
Rpl17-ps2 12 95684196 to 95684727 531 + pseudogene ribosomal protein L17, pseudogene 2
Cpgi4959 12 95691949 to 95692604 655 CpG island CpG island 4959
Tssr114605 12 95692195 to 95692207 12 + TSS region transcription start site region 114605
Tssr114606 12 95692212 to 95692246 34 + TSS region transcription start site region 114606
Flrt2 12 95692226 to 95785215 92989 + protein coding gene fibronectin leucine rich transmembrane protein 2
Tssr114607 12 95692248 to 95692258 10 + TSS region transcription start site region 114607
Tssr114608 12 95692313 to 95692324 11 + TSS region transcription start site region 114608
Tssr114609 12 95692329 to 95692344 15 + TSS region transcription start site region 114609
Cpgi4960 12 95694032 to 95694321 289 CpG island CpG island 4960
Cpgi4961 12 95694937 to 95696109 1172 CpG island CpG island 4961
Tssr114610 12 95695190 to 95695195 5 + TSS region transcription start site region 114610
Tssr114611 12 95695350 to 95695365 15 + TSS region transcription start site region 114611
Tssr114612 12 95695392 to 95695397 5 + TSS region transcription start site region 114612
Tssr114613 12 95695426 to 95695446 20 + TSS region transcription start site region 114613
Tssr114614 12 95695456 to 95695508 52 + TSS region transcription start site region 114614
Tssr114615 12 95695513 to 95695526 13 + TSS region transcription start site region 114615
Tssr114616 12 95701112 to 95701119 7 + TSS region transcription start site region 114616
Tssr114617 12 95703030 to 95703058 28 + TSS region transcription start site region 114617
Tssr114618 12 95709702 to 95709706 4 + TSS region transcription start site region 114618
Gm48014 12 95724956 to 95726255 1299 + unclassified gene predicted gene, 48014
Tssr114619 12 95728330 to 95728342 12 + TSS region transcription start site region 114619
Gm48015 12 95734110 to 95735409 1299 + unclassified gene predicted gene, 48015
Tssr114620 12 95740194 to 95740198 4 + TSS region transcription start site region 114620
Tssr114621 12 95747124 to 95747128 4 + TSS region transcription start site region 114621
Tssr114622 12 95748052 to 95748066 14 + TSS region transcription start site region 114622
Tssr114623 12 95750243 to 95750257 14 + TSS region transcription start site region 114623
Tssr114624 12 95750325 to 95750336 11 + TSS region transcription start site region 114624
Tssr114625 12 95750419 to 95750432 13 + TSS region transcription start site region 114625
D12Mit164 12 95755689 to 95755828 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 164
Tssr114626 12 95760411 to 95760417 6 + TSS region transcription start site region 114626
Tssr114627 12 95779079 to 95779084 5 + TSS region transcription start site region 114627
Tssr114628 12 95780593 to 95780607 14 + TSS region transcription start site region 114628
Tssr114629 12 95780780 to 95780794 14 + TSS region transcription start site region 114629
Tssr114630 12 95782607 to 95782610 3 + TSS region transcription start site region 114630
1700019M22Rik 12 96046767 to 96047120 353 - pseudogene RIKEN cDNA 1700019M22 gene
Tssr117235 12 96047144 to 96047161 17 - TSS region transcription start site region 117235
Tssr3913 12 96047178 to 96047183 5 - TSS region transcription start site region 3913
Tssr3914 12 96047196 to 96047199 3 - TSS region transcription start site region 3914
Gm47394 12 96229152 to 96229363 211 - pseudogene predicted gene, 47394
Gm26480 12 96255941 to 96256237 296 - unclassified non-coding RNA gene predicted gene, 26480
Gm47395 12 96292422 to 96293214 792 + pseudogene predicted gene, 47395
Tssr114631 12 96662310 to 96662317 7 + TSS region transcription start site region 114631
Gm47396 12 96662314 to 96663247 933 + lincRNA gene predicted gene, 47396
Tssr117236 12 96736551 to 96736557 6 - TSS region transcription start site region 117236
D12Mit293 12 96746512 to 96746651 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
D12Mit121 12 96775850 to 96775983 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 121
Gm6863 12 96922423 to 96923058 635 - pseudogene predicted gene 6863
Tssr114632 12 96923046 to 96923062 16 + TSS region transcription start site region 114632
Cpgi4962 12 97061487 to 97061793 306 CpG island CpG island 4962
Gm47397 12 97098706 to 97102464 3758 - lincRNA gene predicted gene, 47397
Tssr114633 12 97124308 to 97124341 33 + TSS region transcription start site region 114633
Tssr114634 12 97124504 to 97124527 23 + TSS region transcription start site region 114634
D12Mit96 12 97159841 to 97159952 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 96
Tssr114635 12 97171034 to 97171043 9 + TSS region transcription start site region 114635
Gm40552 12 97312849 to 97315853 3004 + lincRNA gene predicted gene, 40552
Tssr114636 12 97354549 to 97354550 1 + TSS region transcription start site region 114636
Gm23558 12 97371034 to 97371113 79 - rRNA gene predicted gene, 23558
Gm5186 12 97564149 to 97565068 919 - pseudogene predicted gene 5186
Gm2398 12 97663447 to 97664329 882 + pseudogene predicted gene 2398
Gm8785 12 97677055 to 97677541 486 - pseudogene predicted gene 8785
Gm35274 12 97735450 to 97740235 4785 - lincRNA gene predicted gene, 35274
Gm6869 12 97844442 to 97845119 677 + pseudogene predicted gene 6869
Gm35326 12 97869779 to 97872520 2741 - lincRNA gene predicted gene, 35326
D12Mit120 12 97949752 to 97949863 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 120