Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:90643375-91483389

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Splwt1 12 41646392 to 90920752 49274360 QTL spleen weight 1
Dio2 12 90724552 to 90738438 13886 - protein coding gene deiodinase, iodothyronine, type II
Tssr117187 12 90726909 to 90726915 6 - TSS region transcription start site region 117187
Tssr117188 12 90728111 to 90728133 22 - TSS region transcription start site region 117188
Tssr117189 12 90728198 to 90728223 25 - TSS region transcription start site region 117189
Tssr114579 12 90738092 to 90738096 4 + TSS region transcription start site region 114579
Cpgi4951 12 90738095 to 90738285 190 CpG island CpG island 4951
Tssr117190 12 90738095 to 90738157 62 - TSS region transcription start site region 117190
Gm26512 12 90738212 to 90812245 74033 + bidirectional promoter lncRNA gene predicted gene, 26512
Tssr114580 12 90738215 to 90738226 11 + TSS region transcription start site region 114580
Tssr117191 12 90738562 to 90738568 6 - TSS region transcription start site region 117191
Tssr114581 12 90738732 to 90738777 45 + TSS region transcription start site region 114581
Tssr114582 12 90738847 to 90738870 23 + TSS region transcription start site region 114582
Tssr117192 12 90738955 to 90738975 20 - TSS region transcription start site region 117192
Tssr117193 12 90739028 to 90739045 17 - TSS region transcription start site region 117193
4930544I03Rik 12 90753208 to 90969798 216590 - lincRNA gene RIKEN cDNA 4930544I03 gene
n-R5s65 12 90801619 to 90801735 116 + rRNA gene nuclear encoded rRNA 5S 65
Gm23195 12 90815197 to 90815325 128 + snoRNA gene predicted gene, 23195
Adip6 12 90920648 to 90920752 104 QTL adiposity 6
D12Mit6 12 90920648 to 90920752 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 6
Skull18 12 90920648 to 90920752 104 QTL skull morphology 18
Gm47688 12 90938235 to 90938382 147 - pseudogene predicted gene, 47688
Tssr117194 12 90969781 to 90969790 9 - TSS region transcription start site region 117194
Tssr117195 12 90969798 to 90969811 13 - TSS region transcription start site region 117195
Tssr114583 12 90969894 to 90969904 10 + TSS region transcription start site region 114583
1700105G05Rik 12 90969949 to 90971518 1569 + lincRNA gene RIKEN cDNA 1700105G05 gene
Tssr114584 12 90972845 to 90972855 10 + TSS region transcription start site region 114584
Gm26477 12 90981225 to 90981547 322 + unclassified non-coding RNA gene predicted gene, 26477
Cep128 12 90998492 to 91384409 385917 - protein coding gene centrosomal protein 128
Tssr117196 12 91030070 to 91030103 33 - TSS region transcription start site region 117196
Tssr117197 12 91040583 to 91040614 31 - TSS region transcription start site region 117197
5430427M07Rik 12 91045848 to 91056636 10788 + antisense lncRNA gene RIKEN cDNA 5430427M07 gene
Tssr117198 12 91063375 to 91063389 14 - TSS region transcription start site region 117198
Tssr117199 12 91099710 to 91099715 5 - TSS region transcription start site region 117199
Tssr117200 12 91110252 to 91110255 3 - TSS region transcription start site region 117200
Gm44370 12 91123252 to 91123363 111 + miRNA gene predicted gene, 44370
Gm18968 12 91142787 to 91143648 861 + pseudogene predicted gene, 18968
Gm47742 12 91159861 to 91160273 412 + pseudogene predicted gene, 47742
Tssr117201 12 91215768 to 91215772 4 - TSS region transcription start site region 117201
D12Mit47 12 91217169 to 91217324 155 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 47
Tssr117202 12 91266056 to 91266059 3 - TSS region transcription start site region 117202
D12Mit194 12 91287446 to 91287553 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 194
Gm18388 12 91323706 to 91324225 519 + pseudogene predicted gene, 18388
Tssr117203 12 91330219 to 91330222 3 - TSS region transcription start site region 117203
Tssr3912 12 91357332 to 91357338 6 - TSS region transcription start site region 3912
Cpgi4952 12 91383961 to 91384605 644 CpG island CpG island 4952
Tssr117204 12 91384311 to 91384336 25 - TSS region transcription start site region 117204
Tssr117205 12 91384346 to 91384360 14 - TSS region transcription start site region 117205
Tssr117206 12 91384370 to 91384397 27 - TSS region transcription start site region 117206
Tssr117207 12 91384403 to 91384430 27 - TSS region transcription start site region 117207
Cpgi4953 12 91400383 to 91401218 835 CpG island CpG island 4953
Tssr114585 12 91400438 to 91400452 14 + TSS region transcription start site region 114585
Tssr114586 12 91400466 to 91400477 11 + TSS region transcription start site region 114586
Tssr114587 12 91400990 to 91401022 32 + TSS region transcription start site region 114587
Tshr 12 91400993 to 91540509 139516 + protein coding gene thyroid stimulating hormone receptor
Tssr114588 12 91401024 to 91401038 14 + TSS region transcription start site region 114588
Tssr114589 12 91404022 to 91404053 31 + TSS region transcription start site region 114589
Gm18827 12 91482053 to 91482839 786 + pseudogene predicted gene, 18827
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Bbaa27 12 107342134 to 91287446 -16054688 QTL B.burgdorferi-associated arthritis 27
Pwgrq7 12 108679049 to 90970593 -17708456 QTL pre-weaning growth rate QTL 7