Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:89683222-93495635

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Splwt1 12 41646392 to 90920752 49274360 QTL spleen weight 1
Nrxn3 12 88722876 to 90334935 1612059 + protein coding gene neurexin III
Tssr114563 12 89765386 to 89765390 4 + TSS region transcription start site region 114563
Tssr114564 12 89772052 to 89772059 7 + TSS region transcription start site region 114564
Cpgi4950 12 89811875 to 89812713 838 CpG island CpG island 4950
Tssr114565 12 89812348 to 89812351 3 + TSS region transcription start site region 114565
Tssr114566 12 89812441 to 89812465 24 + TSS region transcription start site region 114566
Tssr114567 12 89812467 to 89812488 21 + TSS region transcription start site region 114567
Tssr114568 12 89812622 to 89812633 11 + TSS region transcription start site region 114568
Tssr114569 12 89812809 to 89812818 9 + TSS region transcription start site region 114569
Tssr114570 12 89812925 to 89812930 5 + TSS region transcription start site region 114570
Tssr114571 12 89813231 to 89813244 13 + TSS region transcription start site region 114571
Tssr114572 12 89813301 to 89813304 3 + TSS region transcription start site region 114572
Tssr114573 12 89813576 to 89813617 41 + TSS region transcription start site region 114573
Tssr114574 12 89834835 to 89834836 1 + TSS region transcription start site region 114574
Tssr3911 12 89852341 to 89852343 2 + TSS region transcription start site region 3911
Tssr114575 12 89870711 to 89870720 9 + TSS region transcription start site region 114575
D12Mit230 12 89994296 to 89994411 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 230
Gm48700 12 90068099 to 90072373 4274 + unclassified gene predicted gene, 48700
Tssr117186 12 90071028 to 90071029 1 - TSS region transcription start site region 117186
Tssr114576 12 90169035 to 90169040 5 + TSS region transcription start site region 114576
Tssr114577 12 90239263 to 90239267 4 + TSS region transcription start site region 114577
Gm2270 12 90364252 to 90367678 3426 + lincRNA gene predicted gene 2270
Gm47684 12 90393903 to 90398662 4759 - lincRNA gene predicted gene, 47684
Gm40538 12 90399667 to 90408824 9157 - lincRNA gene predicted gene, 40538
Tssr114578 12 90430462 to 90430472 10 + TSS region transcription start site region 114578
Gm47686 12 90491625 to 90492109 484 + pseudogene predicted gene, 47686
Gm2139 12 90587571 to 90588645 1074 - pseudogene predicted gene 2139
D12Mit275 12 90607794 to 90607913 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 275
Dio2 12 90724552 to 90738438 13886 - protein coding gene deiodinase, iodothyronine, type II
Tssr117187 12 90726909 to 90726915 6 - TSS region transcription start site region 117187
Tssr117188 12 90728111 to 90728133 22 - TSS region transcription start site region 117188
Tssr117189 12 90728198 to 90728223 25 - TSS region transcription start site region 117189
Tssr114579 12 90738092 to 90738096 4 + TSS region transcription start site region 114579
Cpgi4951 12 90738095 to 90738285 190 CpG island CpG island 4951
Tssr117190 12 90738095 to 90738157 62 - TSS region transcription start site region 117190
Gm26512 12 90738212 to 90812245 74033 + bidirectional promoter lncRNA gene predicted gene, 26512
Tssr114580 12 90738215 to 90738226 11 + TSS region transcription start site region 114580
Tssr117191 12 90738562 to 90738568 6 - TSS region transcription start site region 117191
Tssr114581 12 90738732 to 90738777 45 + TSS region transcription start site region 114581
Tssr114582 12 90738847 to 90738870 23 + TSS region transcription start site region 114582
Tssr117192 12 90738955 to 90738975 20 - TSS region transcription start site region 117192
Tssr117193 12 90739028 to 90739045 17 - TSS region transcription start site region 117193
4930544I03Rik 12 90753208 to 90969798 216590 - lincRNA gene RIKEN cDNA 4930544I03 gene
n-R5s65 12 90801619 to 90801735 116 + rRNA gene nuclear encoded rRNA 5S 65
Gm23195 12 90815197 to 90815325 128 + snoRNA gene predicted gene, 23195
Adip6 12 90920648 to 90920752 104 QTL adiposity 6
D12Mit6 12 90920648 to 90920752 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 6
Skull18 12 90920648 to 90920752 104 QTL skull morphology 18
Gm47688 12 90938235 to 90938382 147 - pseudogene predicted gene, 47688
Tssr117194 12 90969781 to 90969790 9 - TSS region transcription start site region 117194
Tssr117195 12 90969798 to 90969811 13 - TSS region transcription start site region 117195
Tssr114583 12 90969894 to 90969904 10 + TSS region transcription start site region 114583
1700105G05Rik 12 90969949 to 90971518 1569 + lincRNA gene RIKEN cDNA 1700105G05 gene
Tssr114584 12 90972845 to 90972855 10 + TSS region transcription start site region 114584
Gm26477 12 90981225 to 90981547 322 + unclassified non-coding RNA gene predicted gene, 26477
Cep128 12 90998492 to 91384409 385917 - protein coding gene centrosomal protein 128
Tssr117196 12 91030070 to 91030103 33 - TSS region transcription start site region 117196
Tssr117197 12 91040583 to 91040614 31 - TSS region transcription start site region 117197
5430427M07Rik 12 91045848 to 91056636 10788 + antisense lncRNA gene RIKEN cDNA 5430427M07 gene
Tssr117198 12 91063375 to 91063389 14 - TSS region transcription start site region 117198
Tssr117199 12 91099710 to 91099715 5 - TSS region transcription start site region 117199
Tssr117200 12 91110252 to 91110255 3 - TSS region transcription start site region 117200
Gm44370 12 91123252 to 91123363 111 + miRNA gene predicted gene, 44370
Gm18968 12 91142787 to 91143648 861 + pseudogene predicted gene, 18968
Gm47742 12 91159861 to 91160273 412 + pseudogene predicted gene, 47742
Tssr117201 12 91215768 to 91215772 4 - TSS region transcription start site region 117201
D12Mit47 12 91217169 to 91217324 155 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 47
Tssr117202 12 91266056 to 91266059 3 - TSS region transcription start site region 117202
D12Mit194 12 91287446 to 91287553 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 194
Gm18388 12 91323706 to 91324225 519 + pseudogene predicted gene, 18388
Tssr117203 12 91330219 to 91330222 3 - TSS region transcription start site region 117203
Tssr3912 12 91357332 to 91357338 6 - TSS region transcription start site region 3912
Cpgi4952 12 91383961 to 91384605 644 CpG island CpG island 4952
Tssr117204 12 91384311 to 91384336 25 - TSS region transcription start site region 117204
Tssr117205 12 91384346 to 91384360 14 - TSS region transcription start site region 117205
Tssr117206 12 91384370 to 91384397 27 - TSS region transcription start site region 117206
Tssr117207 12 91384403 to 91384430 27 - TSS region transcription start site region 117207
Cpgi4953 12 91400383 to 91401218 835 CpG island CpG island 4953
Tssr114585 12 91400438 to 91400452 14 + TSS region transcription start site region 114585
Tssr114586 12 91400466 to 91400477 11 + TSS region transcription start site region 114586
Tssr114587 12 91400990 to 91401022 32 + TSS region transcription start site region 114587
Tshr 12 91400993 to 91540509 139516 + protein coding gene thyroid stimulating hormone receptor
Tssr114588 12 91401024 to 91401038 14 + TSS region transcription start site region 114588
Tssr114589 12 91404022 to 91404053 31 + TSS region transcription start site region 114589
Gm18827 12 91482053 to 91482839 786 + pseudogene predicted gene, 18827
D12Mit119 12 91509807 to 91509956 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 119
D12Mit118 12 91512194 to 91512321 127 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 118
Gm40541 12 91534090 to 91537158 3068 - lncRNA gene predicted gene, 40541
Cpgi4954 12 91537713 to 91538033 320 CpG island CpG island 4954
Gtf2a1 12 91555262 to 91590487 35225 - protein coding gene general transcription factor II A, 1
Tssr117208 12 91556727 to 91556736 9 - TSS region transcription start site region 117208
Tssr117209 12 91557006 to 91557027 21 - TSS region transcription start site region 117209
Tssr117210 12 91558018 to 91558039 21 - TSS region transcription start site region 117210
Tssr117211 12 91571839 to 91571842 3 - TSS region transcription start site region 117211
Gm25776 12 91573430 to 91573572 142 - snoRNA gene predicted gene, 25776
Tssr117212 12 91573569 to 91573572 3 - TSS region transcription start site region 117212
Cpgi4955 12 91588222 to 91590635 2413 CpG island CpG island 4955
Tssr117213 12 91588348 to 91588374 26 - TSS region transcription start site region 117213
Tssr114590 12 91588478 to 91588493 15 + TSS region transcription start site region 114590
Tssr114591 12 91588501 to 91588519 18 + TSS region transcription start site region 114591
Tssr114592 12 91588550 to 91588563 13 + TSS region transcription start site region 114592
Tssr117214 12 91589597 to 91589620 23 - TSS region transcription start site region 117214
Tssr117215 12 91589699 to 91589702 3 - TSS region transcription start site region 117215
Tssr117216 12 91589953 to 91589968 15 - TSS region transcription start site region 117216
Tssr117217 12 91589981 to 91589992 11 - TSS region transcription start site region 117217
Tssr117218 12 91590032 to 91590056 24 - TSS region transcription start site region 117218
Tssr114593 12 91590240 to 91590252 12 + TSS region transcription start site region 114593
Gm47804 12 91615896 to 91617677 1781 - lincRNA gene predicted gene, 47804
Ston2 12 91633009 to 91786436 153427 - protein coding gene stonin 2
Tssr117219 12 91635913 to 91635917 4 - TSS region transcription start site region 117219
Cpgi4956 12 91647402 to 91648522 1120 CpG island CpG island 4956
Tssr114594 12 91667002 to 91667017 15 + TSS region transcription start site region 114594
Tssr114595 12 91668784 to 91668794 10 + TSS region transcription start site region 114595
Gm8378 12 91674812 to 91686113 11301 - sense intronic lncRNA gene predicted gene 8378
D12Mit179 12 91675705 to 91675853 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 179
Gm16876 12 91681754 to 91687960 6206 + antisense lncRNA gene predicted gene, 16876
Tssr117220 12 91686089 to 91686104 15 - TSS region transcription start site region 117220
Tssr117221 12 91686105 to 91686149 44 - TSS region transcription start site region 117221
Tssr114596 12 91695022 to 91695042 20 + TSS region transcription start site region 114596
Tssr117222 12 91696380 to 91696384 4 - TSS region transcription start site region 117222
Tssr117223 12 91745954 to 91745977 23 - TSS region transcription start site region 117223
Tssr117224 12 91746020 to 91746089 69 - TSS region transcription start site region 117224
Gm34718 12 91756833 to 91757686 853 + lncRNA gene predicted gene, 34718
Tssr114597 12 91757023 to 91757036 13 + TSS region transcription start site region 114597
Tssr114598 12 91757268 to 91757274 6 + TSS region transcription start site region 114598
Gm2347 12 91757271 to 91758651 1380 protein coding gene predicted gene 2347
Cpgi4957 12 91778483 to 91779448 965 CpG island CpG island 4957
Tssr117225 12 91779129 to 91779144 15 - TSS region transcription start site region 117225
Tssr117226 12 91788333 to 91788343 10 - TSS region transcription start site region 117226
Tssr117227 12 91788366 to 91788376 10 - TSS region transcription start site region 117227
Gm22015 12 91791610 to 91791674 64 - miRNA gene predicted gene, 22015
Tssr117228 12 91804371 to 91804376 5 - TSS region transcription start site region 117228
Sel1l 12 91806043 to 91849157 43114 - protein coding gene sel-1 suppressor of lin-12-like (C. elegans)
D12Mit259 12 91846584 to 91846708 124 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 259
Cpgi4958 12 91848551 to 91849477 926 CpG island CpG island 4958
Tssr117229 12 91849081 to 91849154 73 - TSS region transcription start site region 117229
Gm21051 12 91870143 to 91871830 1687 - pseudogene predicted gene, 21051
Gm18621 12 91872965 to 91873643 678 - pseudogene predicted gene, 18621
Rpl31-ps1 12 91890896 to 91891273 377 - pseudogene ribosomal protein L31, pseudogene 1
Gm21614 12 91968399 to 91969577 1178 - pseudogene predicted gene, 21614
D12Jpk1 12 92001088 to 92001225 137 DNA segment DNA segment, Chr 12, Japan, Kominami 1
Tssr114599 12 92005561 to 92005565 4 + TSS region transcription start site region 114599
Gm47984 12 92008604 to 92009175 571 - pseudogene predicted gene, 47984
Gm40548 12 92010419 to 92012411 1992 + lincRNA gene predicted gene, 40548
Gm40598 12 92160893 to 92161439 546 - pseudogene predicted gene, 40598
Gm6841 12 92219377 to 92219974 597 + pseudogene predicted gene 6841
Gm18500 12 92473142 to 92473961 819 - pseudogene predicted gene, 18500
D12Mit163 12 92584543 to 92584689 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 163
D12Mit15 12 92678550 to 92678771 221 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 15
Tssr114600 12 92782526 to 92782530 4 + TSS region transcription start site region 114600
Tssr117230 12 92792888 to 92792890 2 - TSS region transcription start site region 117230
Tssr114601 12 92809558 to 92809607 49 + TSS region transcription start site region 114601
Tssr114602 12 92809670 to 92809681 11 + TSS region transcription start site region 114602
Gm40902 12 92876966 to 92885166 8200 - protein coding gene predicted gene, 40902
Gm40892 12 92885583 to 92894950 9367 - protein coding gene predicted gene, 40892
Gm47998 12 92997765 to 92998151 386 - pseudogene predicted gene, 47998
Gm34869 12 93210460 to 93283662 73202 + lncRNA gene predicted gene, 34869
Tssr117231 12 93273736 to 93273746 10 - TSS region transcription start site region 117231
4930559C10Rik 12 93416458 to 93444823 28365 - lincRNA gene RIKEN cDNA 4930559C10 gene
Tssr117232 12 93444857 to 93444862 5 - TSS region transcription start site region 117232
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Bbaa27 12 107342134 to 91287446 -16054688 QTL B.burgdorferi-associated arthritis 27
Pwgrq7 12 108679049 to 90970593 -17708456 QTL pre-weaning growth rate QTL 7