MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 12:88634806-88954820

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm48664	12	88631356 to 88706819	75463	+	lincRNA gene	predicted gene, 48664
1700040E09Rik	12	88632269 to 88665399	33130	+	lincRNA gene	RIKEN cDNA 1700040E09 gene
Tssr114534	12	88722866 to 88722893	27	+	TSS region	transcription start site region 114534
Nrxn3	12	88722876 to 90334935	1612059	+	protein coding gene	neurexin III
Tssr114535	12	88724934 to 88724962	28	+	TSS region	transcription start site region 114535
Tssr114536	12	88724970 to 88724999	29	+	TSS region	transcription start site region 114536
Tssr114537	12	88725000 to 88725028	28	+	TSS region	transcription start site region 114537
Tssr114538	12	88725595 to 88725607	12	+	TSS region	transcription start site region 114538
Tssr114539	12	88725657 to 88725686	29	+	TSS region	transcription start site region 114539
Tssr114540	12	88794806 to 88794820	14	+	TSS region	transcription start site region 114540
Tssr114541	12	88794995 to 88795007	12	+	TSS region	transcription start site region 114541
Tssr114542	12	88795011 to 88795034	23	+	TSS region	transcription start site region 114542
Cpgi4948	12	88795383 to 88795740	357		CpG island	CpG island 4948
Tssr114543	12	88863046 to 88863054	8	+	TSS region	transcription start site region 114543
Tssr114544	12	88917271 to 88917276	5	+	TSS region	transcription start site region 114544
Gm40537	12	88934674 to 88969655	34981	-	lncRNA gene	predicted gene, 40537
Tssr114545	12	88953416 to 88953434	18	+	TSS region	transcription start site region 114545
Tssr114546	12	88953438 to 88953461	23	+	TSS region	transcription start site region 114546