Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:88050595-89400607

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46994 12 88058081 to 88058299 218 + pseudogene predicted gene 46994
Gm46995 12 88059093 to 88061479 2386 + pseudogene predicted gene 46995
Gm46996 12 88064368 to 88064775 407 - pseudogene predicted gene 46996
Gm5789 12 88066543 to 88067407 864 + pseudogene predicted gene 5789
Gm18617 12 88072937 to 88073195 258 - pseudogene predicted gene, 18617
Gm16368 12 88083697 to 88084131 434 + pseudogene predicted pseudogene 16368
Gm5442 12 88085311 to 88087404 2093 + pseudogene predicted gene 5442
Gm8587 12 88089134 to 88089976 842 + pseudogene predicted pseudogene 8587
Gm48459 12 88108000 to 88108356 356 + pseudogene predicted gene, 48459
Gm48487 12 88110840 to 88111161 321 - pseudogene predicted gene, 48487
Gm33654 12 88112927 to 88113141 214 - pseudogene predicted gene, 33654
Gm5955 12 88124666 to 88124884 218 + protein coding gene predicted gene 5955
Gm8605 12 88125689 to 88128067 2378 + pseudogene predicted gene 8605
Gm48513 12 88130947 to 88131351 404 - pseudogene predicted gene, 48513
Gm8607 12 88139363 to 88139793 430 - pseudogene predicted gene 8607
Gm18630 12 88153674 to 88156251 2577 + pseudogene predicted gene, 18630
Gm10436 12 88175589 to 88181894 6305 - protein coding gene predicted gene 10436
Gm18631 12 88220556 to 88222617 2061 + pseudogene predicted gene, 18631
Gm48553 12 88225537 to 88225944 407 - pseudogene predicted gene, 48553
Gm48560 12 88248544 to 88248705 161 - pseudogene predicted gene, 48560
Gm8332 12 88249666 to 88250100 434 - pseudogene predicted pseudogene 8332
Tssr117184 12 88252865 to 88252872 7 - TSS region transcription start site region 117184
Gm18618 12 88258913 to 88259385 472 - pseudogene predicted gene, 18618
Gm48561 12 88270365 to 88270614 249 - pseudogene predicted gene, 48561
Gm5662 12 88270640 to 88274500 3860 - protein coding gene predicted gene 5662
Gm21039 12 88280358 to 88282770 2412 - pseudogene predicted gene, 21039
Gm7104 12 88284538 to 88287069 2531 - pseudogene predicted gene 7104
Gm8634 12 88302813 to 88305189 2376 + pseudogene predicted gene 8634
Gm48564 12 88308040 to 88308447 407 - pseudogene predicted gene, 48564
Gm18619 12 88317528 to 88318674 1146 - pseudogene predicted gene, 18619
Gm5039 12 88320122 to 88321762 1640 - pseudogene predicted gene 5039
Gm10264 12 88329254 to 88329682 428 + protein coding gene predicted gene 10264
Gm18632 12 88331039 to 88333125 2086 + pseudogene predicted gene, 18632
Gm8655 12 88334624 to 88335475 851 + pseudogene predicted gene 8655
Gm48572 12 88338439 to 88338820 381 + pseudogene predicted gene, 48572
Gm18620 12 88339911 to 88340774 863 - pseudogene predicted gene, 18620
Gm48577 12 88342539 to 88342689 150 - pseudogene predicted gene, 48577
Gm6190 12 88353313 to 88354686 1373 - pseudogene predicted gene 6190
Cpgi4946 12 88354195 to 88354695 500 CpG island CpG island 4946
Gm5655 12 88359357 to 88360257 900 - pseudogene predicted gene 5655
Cpgi4947 12 88360428 to 88361179 751 CpG island CpG island 4947
Tssr114529 12 88360535 to 88360603 68 + TSS region transcription start site region 114529
Adck1 12 88360554 to 88461724 101170 + protein coding gene aarF domain containing kinase 1
Tssr114530 12 88360631 to 88360657 26 + TSS region transcription start site region 114530
Tssr114531 12 88360803 to 88360826 23 + TSS region transcription start site region 114531
Tssr114532 12 88360840 to 88360850 10 + TSS region transcription start site region 114532
3200001D21Rik 12 88365314 to 88377323 12009 - antisense lncRNA gene RIKEN cDNA 3200001D21 gene
Tssr3908 12 88381723 to 88381728 5 + TSS region transcription start site region 3908
4930473H19Rik 12 88434113 to 88442254 8141 - antisense lncRNA gene RIKEN cDNA 4930473H19 gene
Tssr117185 12 88442220 to 88442257 37 - TSS region transcription start site region 117185
Gm48642 12 88503768 to 88504209 441 + pseudogene predicted gene, 48642
D12Mit239 12 88568935 to 88569024 89 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 239
Gm19540 12 88588616 to 88590437 1821 - pseudogene predicted gene, 19540
Gm48665 12 88629764 to 88631878 2114 - lincRNA gene predicted gene, 48665
Gm48664 12 88631356 to 88706819 75463 + lincRNA gene predicted gene, 48664
Tssr114533 12 88632267 to 88632280 13 + TSS region transcription start site region 114533
1700040E09Rik 12 88632269 to 88665399 33130 + lincRNA gene RIKEN cDNA 1700040E09 gene
Tssr114534 12 88722866 to 88722893 27 + TSS region transcription start site region 114534
Nrxn3 12 88722876 to 90334935 1612059 + protein coding gene neurexin III
Tssr114535 12 88724934 to 88724962 28 + TSS region transcription start site region 114535
Tssr114536 12 88724970 to 88724999 29 + TSS region transcription start site region 114536
Tssr114537 12 88725000 to 88725028 28 + TSS region transcription start site region 114537
Tssr114538 12 88725595 to 88725607 12 + TSS region transcription start site region 114538
Tssr114539 12 88725657 to 88725686 29 + TSS region transcription start site region 114539
Tssr114540 12 88794806 to 88794820 14 + TSS region transcription start site region 114540
Tssr114541 12 88794995 to 88795007 12 + TSS region transcription start site region 114541
Tssr114542 12 88795011 to 88795034 23 + TSS region transcription start site region 114542
Cpgi4948 12 88795383 to 88795740 357 CpG island CpG island 4948
Tssr114543 12 88863046 to 88863054 8 + TSS region transcription start site region 114543
Tssr114544 12 88917271 to 88917276 5 + TSS region transcription start site region 114544
Gm40537 12 88934674 to 88969655 34981 - lncRNA gene predicted gene, 40537
Tssr114545 12 88953416 to 88953434 18 + TSS region transcription start site region 114545
Tssr114546 12 88953438 to 88953461 23 + TSS region transcription start site region 114546
Tssr114547 12 88957421 to 88957430 9 + TSS region transcription start site region 114547
Tssr114548 12 88990149 to 88990152 3 + TSS region transcription start site region 114548
Tssr114549 12 89013155 to 89013168 13 + TSS region transcription start site region 114549
Tssr114550 12 89013248 to 89013295 47 + TSS region transcription start site region 114550
D12Mit117 12 89019781 to 89019907 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 117
Tssr114551 12 89045920 to 89045925 5 + TSS region transcription start site region 114551
Tssr114552 12 89063916 to 89063958 42 + TSS region transcription start site region 114552
Tssr114553 12 89081380 to 89081383 3 + TSS region transcription start site region 114553
Tssr114554 12 89089454 to 89089456 2 + TSS region transcription start site region 114554
Tgq23 12 89146107 to 89146107 0 QTL triglyceride QTL 23
Gm37980 12 89253452 to 89255361 1909 - unclassified gene predicted gene, 37980
Cpgi4949 12 89260117 to 89260611 494 CpG island CpG island 4949
Tssr114555 12 89290591 to 89290592 1 + TSS region transcription start site region 114555
Gm27313 12 89298442 to 89298583 141 - miRNA gene predicted gene, 27313
Tssr3909 12 89397992 to 89397996 4 + TSS region transcription start site region 3909