Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:87437688-87773850

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alkbh1 12 87428077 to 87443839 15762 - protein coding gene alkB homolog 1, histone H2A dioxygenase
Mir3068 12 87437679 to 87437757 78 - miRNA gene microRNA 3068
Gm29362 12 87437684 to 87437816 132 - lincRNA gene predicted gene 29362
2700073G19Rik 12 87442848 to 87444017 1169 - protein coding gene RIKEN cDNA 2700073G19 gene
Cpgi4943 12 87443320 to 87444036 716 CpG island CpG island 4943
Tssr117178 12 87443800 to 87443850 50 - TSS region transcription start site region 117178
Slirp 12 87443896 to 87449924 6028 + protein coding gene SRA stem-loop interacting RNA binding protein
Tssr114525 12 87443904 to 87443934 30 + TSS region transcription start site region 114525
Snw1 12 87449910 to 87472299 22389 - protein coding gene SNW domain containing 1
Tssr117179 12 87459448 to 87459486 38 - TSS region transcription start site region 117179
Cpgi4944 12 87471811 to 87472453 642 CpG island CpG island 4944
Tssr117180 12 87472267 to 87472332 65 - TSS region transcription start site region 117180
Tssr117181 12 87477197 to 87477210 13 - TSS region transcription start site region 117181
Tssr164705 12 87478143 to 87478150 7 + TSS region transcription start site region 164705
Cpgi4945 12 87479990 to 87480276 286 CpG island CpG island 4945
Gm18983 12 87480108 to 87482836 2728 + pseudogene predicted gene, 18983
Gm18624 12 87485143 to 87485800 657 + pseudogene predicted gene, 18624
Gm5788 12 87494721 to 87495155 434 + pseudogene predicted pseudogene 5788
Gm18625 12 87496093 to 87496363 270 + pseudogene predicted gene, 18625
Gm49362 12 87507772 to 87508264 492 + pseudogene predicted gene, 49362
Tssr114526 12 87514315 to 87514319 4 + TSS region transcription start site region 114526
Gm8300 12 87514316 to 87518265 3949 + protein coding gene predicted gene 8300
Gm18626 12 87519727 to 87520870 1143 + pseudogene predicted gene, 18626
Gm48110 12 87537905 to 87538304 399 + pseudogene predicted gene, 48110
Gm18615 12 87541197 to 87543228 2031 - pseudogene predicted gene, 18615
Oog1 12 87602688 to 87608850 6162 + protein coding gene oogenesin 1
Gm4027 12 87618869 to 87622955 4086 + protein coding gene predicted gene 4027
Gm48153 12 87629993 to 87630401 408 + pseudogene predicted gene, 48153
Gm3742 12 87633281 to 87643442 10161 - pseudogene predicted gene 3742
Gm16381 12 87644118 to 87644620 502 - protein coding gene predicted gene 16381
Gm21937 12 87759158 to 87759375 217 + pseudogene predicted gene, 21937
Gm48150 12 87763959 to 87764316 357 - pseudogene predicted gene, 48150
Gm21559 12 87765449 to 87766303 854 - pseudogene predicted gene, 21559
Gm21569 12 87767647 to 87769460 1813 - pseudogene predicted gene, 21569
Gm21319 12 87772425 to 87775755 3330 - protein coding gene predicted gene, 21319