Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:87261883-88332144

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764
Tssr117172 12 87354145 to 87354151 6 - TSS region transcription start site region 117172
Tssr117173 12 87369017 to 87369034 17 - TSS region transcription start site region 117173
Gm48806 12 87371992 to 87372315 323 + pseudogene predicted gene, 48806
Tssr3906 12 87373904 to 87373905 1 + TSS region transcription start site region 3906
D12Mit178 12 87376578 to 87376727 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 178
Gm33444 12 87383582 to 87410739 27157 + lncRNA gene predicted gene, 33444
Cpgi4941 12 87387418 to 87388625 1207 CpG island CpG island 4941
Tssr114522 12 87387500 to 87387503 3 + TSS region transcription start site region 114522
Tssr117174 12 87388189 to 87388247 58 - TSS region transcription start site region 117174
Tssr117175 12 87388248 to 87388289 41 - TSS region transcription start site region 117175
Tssr117176 12 87388317 to 87388336 19 - TSS region transcription start site region 117176
Tssr114523 12 87388632 to 87388676 44 + TSS region transcription start site region 114523
Gm48873 12 87394444 to 87395548 1104 + pseudogene predicted gene, 48873
Cpgi4942 12 87408149 to 87408310 161 CpG island CpG island 4942
Tssr114524 12 87420464 to 87420468 4 + TSS region transcription start site region 114524
Gm8557 12 87420511 to 87420985 474 + pseudogene predicted gene 8557
Tssr117177 12 87421014 to 87421016 2 - TSS region transcription start site region 117177
Alkbh1 12 87428077 to 87443839 15762 - protein coding gene alkB homolog 1, histone H2A dioxygenase
Mir3068 12 87437679 to 87437757 78 - miRNA gene microRNA 3068
Gm29362 12 87437684 to 87437816 132 - lincRNA gene predicted gene 29362
2700073G19Rik 12 87442848 to 87444017 1169 - protein coding gene RIKEN cDNA 2700073G19 gene
Cpgi4943 12 87443320 to 87444036 716 CpG island CpG island 4943
Tssr117178 12 87443800 to 87443850 50 - TSS region transcription start site region 117178
Slirp 12 87443896 to 87449924 6028 + protein coding gene SRA stem-loop interacting RNA binding protein
Tssr114525 12 87443904 to 87443934 30 + TSS region transcription start site region 114525
Snw1 12 87449910 to 87472299 22389 - protein coding gene SNW domain containing 1
Tssr117179 12 87459448 to 87459486 38 - TSS region transcription start site region 117179
Cpgi4944 12 87471811 to 87472453 642 CpG island CpG island 4944
Tssr117180 12 87472267 to 87472332 65 - TSS region transcription start site region 117180
Tssr117181 12 87477197 to 87477210 13 - TSS region transcription start site region 117181
Tssr164705 12 87478143 to 87478150 7 + TSS region transcription start site region 164705
Cpgi4945 12 87479990 to 87480276 286 CpG island CpG island 4945
Gm18983 12 87480108 to 87482836 2728 + pseudogene predicted gene, 18983
Gm18624 12 87485143 to 87485800 657 + pseudogene predicted gene, 18624
Gm5788 12 87494721 to 87495155 434 + pseudogene predicted pseudogene 5788
Gm18625 12 87496093 to 87496363 270 + pseudogene predicted gene, 18625
Gm49362 12 87507772 to 87508264 492 + pseudogene predicted gene, 49362
Tssr114526 12 87514315 to 87514319 4 + TSS region transcription start site region 114526
Gm8300 12 87514316 to 87518265 3949 + protein coding gene predicted gene 8300
Gm18626 12 87519727 to 87520870 1143 + pseudogene predicted gene, 18626
Gm48110 12 87537905 to 87538304 399 + pseudogene predicted gene, 48110
Gm18615 12 87541197 to 87543228 2031 - pseudogene predicted gene, 18615
Oog1 12 87602688 to 87608850 6162 + protein coding gene oogenesin 1
Gm4027 12 87618869 to 87622955 4086 + protein coding gene predicted gene 4027
Gm48153 12 87629993 to 87630401 408 + pseudogene predicted gene, 48153
Gm3742 12 87633281 to 87643442 10161 - pseudogene predicted gene 3742
Gm16381 12 87644118 to 87644620 502 - protein coding gene predicted gene 16381
Gm21937 12 87759158 to 87759375 217 + pseudogene predicted gene, 21937
Gm48150 12 87763959 to 87764316 357 - pseudogene predicted gene, 48150
Gm21559 12 87765449 to 87766303 854 - pseudogene predicted gene, 21559
Gm21569 12 87767647 to 87769460 1813 - pseudogene predicted gene, 21569
Gm21319 12 87772425 to 87775755 3330 - protein coding gene predicted gene, 21319
Gm21939 12 87781143 to 87783915 2772 + pseudogene predicted gene, 21939
Gm48152 12 87786283 to 87786943 660 + pseudogene predicted gene, 48152
Gm21936 12 87795512 to 87795946 434 + protein coding gene predicted gene, 21936
Gm48149 12 87796883 to 87797144 261 + pseudogene predicted gene, 48149
Gm48154 12 87808537 to 87809024 487 + pseudogene predicted gene, 48154
BB287469 12 87816577 to 87820676 4099 + protein coding gene expressed sequence BB287469
Gm48151 12 87827710 to 87828118 408 + pseudogene predicted gene, 48151
Gm21038 12 87831002 to 87841162 10160 - pseudogene predicted gene, 21038
Gm2001 12 87841965 to 87842186 221 - protein coding gene predicted gene 2001
Gm1995 12 87861366 to 87863967 2601 + pseudogene predicted gene 1995
Gm18627 12 87865785 to 87868203 2418 + pseudogene predicted gene, 18627
Tssr114527 12 87874070 to 87874075 5 + TSS region transcription start site region 114527
Gm2016 12 87874072 to 87877859 3787 + protein coding gene predicted gene 2016
Gm49363 12 87889167 to 87889640 473 + pseudogene predicted gene, 49363
Tssr3907 12 87892802 to 87892806 4 + TSS region transcription start site region 3907
Gm2022 12 87895370 to 87895804 434 + protein coding gene predicted pseudogene 2022
Gm18616 12 87910965 to 87913545 2580 - pseudogene predicted gene, 18616
Gm2035 12 87919423 to 87919857 434 - pseudogene predicted pseudogene 2035
Tssr117182 12 87922439 to 87922445 6 - TSS region transcription start site region 117182
Gm18628 12 87927534 to 87928008 474 + pseudogene predicted gene, 18628
Gm2042 12 87954480 to 87960682 6202 + protein coding gene predicted gene 2042
Gm2046 12 87970828 to 87980231 9403 + protein coding gene predicted gene 2046
Gm48389 12 87973529 to 87973757 228 + pseudogene predicted gene, 48389
Gm48388 12 87980012 to 87980224 212 + pseudogene predicted gene, 48388
Tssr114528 12 87985392 to 87985396 4 + TSS region transcription start site region 114528
Gm2099 12 87985619 to 87988959 3340 + pseudogene predicted gene 2099
Gm46992 12 87991489 to 87994707 3218 - pseudogene predicted gene 46992
Gm2075 12 88011848 to 88012282 434 + pseudogene predicted gene 2075
Gm6803 12 88018337 to 88018771 434 - protein coding gene predicted gene 6803
Tssr117183 12 88021272 to 88021281 9 - TSS region transcription start site region 117183
Gm2056 12 88027004 to 88027438 434 + pseudogene predicted gene 2056
Gm18629 12 88028811 to 88029757 946 + pseudogene predicted gene, 18629
Gm46993 12 88036540 to 88036798 258 - pseudogene predicted gene 46993
Gm18247 12 88040682 to 88041949 1267 + pseudogene predicted gene, 18247
Gm46998 12 88044383 to 88044712 329 - pseudogene predicted gene 46998
Gm46997 12 88046286 to 88046502 216 - pseudogene predicted gene 46997
Gm46994 12 88058081 to 88058299 218 + pseudogene predicted gene 46994
Gm46995 12 88059093 to 88061479 2386 + pseudogene predicted gene 46995
Gm46996 12 88064368 to 88064775 407 - pseudogene predicted gene 46996
Gm5789 12 88066543 to 88067407 864 + pseudogene predicted gene 5789
Gm18617 12 88072937 to 88073195 258 - pseudogene predicted gene, 18617
Gm16368 12 88083697 to 88084131 434 + pseudogene predicted pseudogene 16368
Gm5442 12 88085311 to 88087404 2093 + pseudogene predicted gene 5442
Gm8587 12 88089134 to 88089976 842 + pseudogene predicted pseudogene 8587
Gm48459 12 88108000 to 88108356 356 + pseudogene predicted gene, 48459
Gm48487 12 88110840 to 88111161 321 - pseudogene predicted gene, 48487
Gm33654 12 88112927 to 88113141 214 - pseudogene predicted gene, 33654
Gm5955 12 88124666 to 88124884 218 + protein coding gene predicted gene 5955
Gm8605 12 88125689 to 88128067 2378 + pseudogene predicted gene 8605
Gm48513 12 88130947 to 88131351 404 - pseudogene predicted gene, 48513
Gm8607 12 88139363 to 88139793 430 - pseudogene predicted gene 8607
Gm18630 12 88153674 to 88156251 2577 + pseudogene predicted gene, 18630
Gm10436 12 88175589 to 88181894 6305 - protein coding gene predicted gene 10436
Gm18631 12 88220556 to 88222617 2061 + pseudogene predicted gene, 18631
Gm48553 12 88225537 to 88225944 407 - pseudogene predicted gene, 48553
Gm48560 12 88248544 to 88248705 161 - pseudogene predicted gene, 48560
Gm8332 12 88249666 to 88250100 434 - pseudogene predicted pseudogene 8332
Tssr117184 12 88252865 to 88252872 7 - TSS region transcription start site region 117184
Gm18618 12 88258913 to 88259385 472 - pseudogene predicted gene, 18618
Gm48561 12 88270365 to 88270614 249 - pseudogene predicted gene, 48561
Gm5662 12 88270640 to 88274500 3860 - protein coding gene predicted gene 5662
Gm21039 12 88280358 to 88282770 2412 - pseudogene predicted gene, 21039
Gm7104 12 88284538 to 88287069 2531 - pseudogene predicted gene 7104
Gm8634 12 88302813 to 88305189 2376 + pseudogene predicted gene 8634
Gm48564 12 88308040 to 88308447 407 - pseudogene predicted gene, 48564
Gm18619 12 88317528 to 88318674 1146 - pseudogene predicted gene, 18619
Gm5039 12 88320122 to 88321762 1640 - pseudogene predicted gene 5039
Gm10264 12 88329254 to 88329682 428 + protein coding gene predicted gene 10264
Gm18632 12 88331039 to 88333125 2086 + pseudogene predicted gene, 18632