Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:86961992-87782315

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cipc 12 86947043 to 86965362 18319 + protein coding gene CLOCK interacting protein, circadian
Cpgi4931 12 86974484 to 86974941 457 CpG island CpG island 4931
Cpgi4932 12 86977766 to 86977962 196 CpG island CpG island 4932
Zdhhc22 12 86980763 to 86990430 9667 - protein coding gene zinc finger, DHHC-type containing 22
Tssr117147 12 86983088 to 86983108 20 - TSS region transcription start site region 117147
Cpgi4933 12 86983385 to 86983837 452 CpG island CpG island 4933
Cpgi4934 12 86989675 to 86990801 1126 CpG island CpG island 4934
Tssr117148 12 86990451 to 86990467 16 - TSS region transcription start site region 117148
Tssr117149 12 86990468 to 86990483 15 - TSS region transcription start site region 117149
Tssr117150 12 86990484 to 86990494 10 - TSS region transcription start site region 117150
Tssr117151 12 86990503 to 86990521 18 - TSS region transcription start site region 117151
Tssr117152 12 86990522 to 86990533 11 - TSS region transcription start site region 117152
Tssr117153 12 86990569 to 86990588 19 - TSS region transcription start site region 117153
Tssr117154 12 86990603 to 86990612 9 - TSS region transcription start site region 117154
Tssr3904 12 86990659 to 86990662 3 - TSS region transcription start site region 3904
Tssr114499 12 87021321 to 87021333 12 + TSS region transcription start site region 114499
Tmem63c 12 87021340 to 87090043 68703 + protein coding gene transmembrane protein 63c
Tssr114500 12 87021366 to 87021372 6 + TSS region transcription start site region 114500
Tssr114501 12 87021375 to 87021382 7 + TSS region transcription start site region 114501
Tssr114502 12 87026286 to 87026297 11 + TSS region transcription start site region 114502
Cpgi4935 12 87026301 to 87026937 636 CpG island CpG island 4935
Tssr114503 12 87026318 to 87026337 19 + TSS region transcription start site region 114503
Tssr114504 12 87026458 to 87026522 64 + TSS region transcription start site region 114504
Tssr114505 12 87026570 to 87026583 13 + TSS region transcription start site region 114505
Gm25847 12 87034766 to 87034861 95 + miRNA gene predicted gene, 25847
Tssr117155 12 87048744 to 87048746 2 - TSS region transcription start site region 117155
Gm15745 12 87067477 to 87067591 114 + pseudogene predicted gene 15745
Gm18499 12 87080656 to 87081676 1020 - pseudogene predicted gene, 18499
Ngb 12 87097531 to 87102539 5008 - protein coding gene neuroglobin
Cpgi4936 12 87101954 to 87102602 648 CpG island CpG island 4936
Pomt2 12 87106861 to 87147968 41107 - protein coding gene protein-O-mannosyltransferase 2
Tssr3905 12 87109325 to 87109330 5 + TSS region transcription start site region 3905
Cpgi4937 12 87146967 to 87148392 1425 CpG island CpG island 4937
Tssr114506 12 87147149 to 87147201 52 + TSS region transcription start site region 114506
Gstz1 12 87147165 to 87164723 17558 + protein coding gene glutathione transferase zeta 1 (maleylacetoacetate isomerase)
Tssr117156 12 87147418 to 87147476 58 - TSS region transcription start site region 117156
Tssr117157 12 87147484 to 87147495 11 - TSS region transcription start site region 117157
Tssr114507 12 87147703 to 87147783 80 + TSS region transcription start site region 114507
Tssr114508 12 87147785 to 87147792 7 + TSS region transcription start site region 114508
Tssr117158 12 87147883 to 87147908 25 - TSS region transcription start site region 117158
Tssr114509 12 87147970 to 87147997 27 + TSS region transcription start site region 114509
Gm6566 12 87149475 to 87155485 6010 - antisense lncRNA gene predicted gene 6566
Tssr114510 12 87157580 to 87157599 19 + TSS region transcription start site region 114510
Tssr114511 12 87157600 to 87157641 41 + TSS region transcription start site region 114511
Tssr114512 12 87157876 to 87157890 14 + TSS region transcription start site region 114512
Tssr117159 12 87159947 to 87159948 1 - TSS region transcription start site region 117159
Tssr114513 12 87163703 to 87163729 26 + TSS region transcription start site region 114513
Tssr114514 12 87163771 to 87163797 26 + TSS region transcription start site region 114514
Tssr114515 12 87163817 to 87163831 14 + TSS region transcription start site region 114515
Tssr114516 12 87163857 to 87163869 12 + TSS region transcription start site region 114516
Tmed8 12 87166237 to 87200229 33992 - protein coding gene transmembrane p24 trafficking protein 8
Gm40496 12 87168628 to 87184502 15874 + lncRNA gene predicted gene, 40496
Cpgi4938 12 87199538 to 87200543 1005 CpG island CpG island 4938
Tssr117160 12 87200200 to 87200284 84 - TSS region transcription start site region 117160
Tssr117161 12 87200306 to 87200344 38 - TSS region transcription start site region 117161
Tssr114517 12 87200336 to 87200345 9 + TSS region transcription start site region 114517
Samd15 12 87200458 to 87213538 13080 + protein coding gene sterile alpha motif domain containing 15
Tssr114518 12 87200502 to 87200522 20 + TSS region transcription start site region 114518
Tssr114519 12 87200524 to 87200544 20 + TSS region transcription start site region 114519
D12Mit76 12 87215652 to 87215908 256 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 76
Noxred1 12 87221123 to 87238601 17478 - protein coding gene NADP+ dependent oxidoreductase domain containing 1
Tssr117162 12 87225089 to 87225128 39 - TSS region transcription start site region 117162
Tssr117163 12 87236994 to 87237004 10 - TSS region transcription start site region 117163
Tssr117164 12 87237005 to 87237019 14 - TSS region transcription start site region 117164
Tssr117165 12 87238703 to 87238752 49 - TSS region transcription start site region 117165
Tssr117166 12 87238756 to 87238771 15 - TSS region transcription start site region 117166
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117167 12 87254964 to 87254982 18 - TSS region transcription start site region 117167
Tssr117168 12 87260694 to 87260708 14 - TSS region transcription start site region 117168
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764
Tssr117172 12 87354145 to 87354151 6 - TSS region transcription start site region 117172
Tssr117173 12 87369017 to 87369034 17 - TSS region transcription start site region 117173
Gm48806 12 87371992 to 87372315 323 + pseudogene predicted gene, 48806
Tssr3906 12 87373904 to 87373905 1 + TSS region transcription start site region 3906
D12Mit178 12 87376578 to 87376727 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 178
Gm33444 12 87383582 to 87410739 27157 + lncRNA gene predicted gene, 33444
Cpgi4941 12 87387418 to 87388625 1207 CpG island CpG island 4941
Tssr114522 12 87387500 to 87387503 3 + TSS region transcription start site region 114522
Tssr117174 12 87388189 to 87388247 58 - TSS region transcription start site region 117174
Tssr117175 12 87388248 to 87388289 41 - TSS region transcription start site region 117175
Tssr117176 12 87388317 to 87388336 19 - TSS region transcription start site region 117176
Tssr114523 12 87388632 to 87388676 44 + TSS region transcription start site region 114523
Gm48873 12 87394444 to 87395548 1104 + pseudogene predicted gene, 48873
Cpgi4942 12 87408149 to 87408310 161 CpG island CpG island 4942
Tssr114524 12 87420464 to 87420468 4 + TSS region transcription start site region 114524
Gm8557 12 87420511 to 87420985 474 + pseudogene predicted gene 8557
Tssr117177 12 87421014 to 87421016 2 - TSS region transcription start site region 117177
Alkbh1 12 87428077 to 87443839 15762 - protein coding gene alkB homolog 1, histone H2A dioxygenase
Mir3068 12 87437679 to 87437757 78 - miRNA gene microRNA 3068
Gm29362 12 87437684 to 87437816 132 - lincRNA gene predicted gene 29362
2700073G19Rik 12 87442848 to 87444017 1169 - protein coding gene RIKEN cDNA 2700073G19 gene
Cpgi4943 12 87443320 to 87444036 716 CpG island CpG island 4943
Tssr117178 12 87443800 to 87443850 50 - TSS region transcription start site region 117178
Slirp 12 87443896 to 87449924 6028 + protein coding gene SRA stem-loop interacting RNA binding protein
Tssr114525 12 87443904 to 87443934 30 + TSS region transcription start site region 114525
Snw1 12 87449910 to 87472299 22389 - protein coding gene SNW domain containing 1
Tssr117179 12 87459448 to 87459486 38 - TSS region transcription start site region 117179
Cpgi4944 12 87471811 to 87472453 642 CpG island CpG island 4944
Tssr117180 12 87472267 to 87472332 65 - TSS region transcription start site region 117180
Tssr117181 12 87477197 to 87477210 13 - TSS region transcription start site region 117181
Tssr164705 12 87478143 to 87478150 7 + TSS region transcription start site region 164705
Cpgi4945 12 87479990 to 87480276 286 CpG island CpG island 4945
Gm18983 12 87480108 to 87482836 2728 + pseudogene predicted gene, 18983
Gm18624 12 87485143 to 87485800 657 + pseudogene predicted gene, 18624
Gm5788 12 87494721 to 87495155 434 + pseudogene predicted pseudogene 5788
Gm18625 12 87496093 to 87496363 270 + pseudogene predicted gene, 18625
Gm49362 12 87507772 to 87508264 492 + pseudogene predicted gene, 49362
Tssr114526 12 87514315 to 87514319 4 + TSS region transcription start site region 114526
Gm8300 12 87514316 to 87518265 3949 + protein coding gene predicted gene 8300
Gm18626 12 87519727 to 87520870 1143 + pseudogene predicted gene, 18626
Gm48110 12 87537905 to 87538304 399 + pseudogene predicted gene, 48110
Gm18615 12 87541197 to 87543228 2031 - pseudogene predicted gene, 18615
Oog1 12 87602688 to 87608850 6162 + protein coding gene oogenesin 1
Gm4027 12 87618869 to 87622955 4086 + protein coding gene predicted gene 4027
Gm48153 12 87629993 to 87630401 408 + pseudogene predicted gene, 48153
Gm3742 12 87633281 to 87643442 10161 - pseudogene predicted gene 3742
Gm16381 12 87644118 to 87644620 502 - protein coding gene predicted gene 16381
Gm21937 12 87759158 to 87759375 217 + pseudogene predicted gene, 21937
Gm48150 12 87763959 to 87764316 357 - pseudogene predicted gene, 48150
Gm21559 12 87765449 to 87766303 854 - pseudogene predicted gene, 21559
Gm21569 12 87767647 to 87769460 1813 - pseudogene predicted gene, 21569
Gm21319 12 87772425 to 87775755 3330 - protein coding gene predicted gene, 21319
Gm21939 12 87781143 to 87783915 2772 + pseudogene predicted gene, 21939